Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 LINC02199-203ENST00000510229 496 ntTSL 3 BASIC23.73■■□□□ 1.39
SHANK3Q9BYB0 RNA5SP415-201ENST00000517246 115 ntBASIC23.73■■□□□ 1.39
SHANK3Q9BYB0 RPS29-206ENST00000557111 488 ntTSL 2 BASIC23.73■■□□□ 1.39
SHANK3Q9BYB0 IER2-202ENST00000587885 1291 ntAPPRIS P1 TSL 3 BASIC23.73■■□□□ 1.39
SHANK3Q9BYB0 AL356488.2-201ENST00000602755 427 ntBASIC23.73■■□□□ 1.39
SHANK3Q9BYB0 GLYCTK-202ENST00000436784 1982 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
SHANK3Q9BYB0 PDZD3-203ENST00000525131 1882 ntTSL 2 BASIC23.72■■□□□ 1.39
SHANK3Q9BYB0 AL606970.3-201ENST00000446811 2246 ntTSL 2 BASIC23.72■■□□□ 1.39
SHANK3Q9BYB0 LINC01123-202ENST00000419296 2436 ntTSL 2 BASIC23.72■■□□□ 1.39
SHANK3Q9BYB0 JDP2-201ENST00000267569 1700 ntTSL 1 (best) BASIC23.72■■□□□ 1.39
SHANK3Q9BYB0 FNDC8-201ENST00000158009 1388 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
SHANK3Q9BYB0 ARHGAP22-204ENST00000417247 2340 ntTSL 2 BASIC23.72■■□□□ 1.39
SHANK3Q9BYB0 STMN3-201ENST00000370053 2255 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
SHANK3Q9BYB0 NECTIN1-202ENST00000340882 1059 ntTSL 1 (best) BASIC23.72■■□□□ 1.39
SHANK3Q9BYB0 MCF2L-AS1-201ENST00000446789 712 ntTSL 3 BASIC23.72■■□□□ 1.39
SHANK3Q9BYB0 SMIM29-206ENST00000476320 1297 ntAPPRIS P1 TSL 2 BASIC23.72■■□□□ 1.39
SHANK3Q9BYB0 NUBP2-214ENST00000568706 913 ntTSL 2 BASIC23.72■■□□□ 1.39
SHANK3Q9BYB0 CCZ1-207ENST00000628813 2218 ntTSL 2 BASIC23.72■■□□□ 1.39
SHANK3Q9BYB0 AC126755.2-202ENST00000427999 1547 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
SHANK3Q9BYB0 CCNA1-202ENST00000440264 1758 ntAPPRIS P1 TSL 2 BASIC23.72■■□□□ 1.39
SHANK3Q9BYB0 GPN3-202ENST00000537466 1491 ntTSL 1 (best) BASIC23.72■■□□□ 1.39
SHANK3Q9BYB0 AMDHD1-201ENST00000266736 2260 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
SHANK3Q9BYB0 ZNF259P1-201ENST00000407656 1365 ntBASIC23.71■■□□□ 1.39
SHANK3Q9BYB0 SEC61A2-201ENST00000298428 1893 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
SHANK3Q9BYB0 CAMK1D-201ENST00000378845 1578 ntAPPRIS ALT2 TSL 1 (best) BASIC23.71■■□□□ 1.39
SHANK3Q9BYB0 SIGIRR-202ENST00000397632 1598 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
SHANK3Q9BYB0 EFS-203ENST00000429593 2610 ntTSL 2 BASIC23.71■■□□□ 1.39
SHANK3Q9BYB0 CST3-201ENST00000376925 873 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
SHANK3Q9BYB0 TMEM128-202ENST00000382753 1221 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
SHANK3Q9BYB0 AC131097.3-201ENST00000413820 1228 ntTSL 1 (best) BASIC23.71■■□□□ 1.39
SHANK3Q9BYB0 AC005104.2-201ENST00000427818 678 ntBASIC23.71■■□□□ 1.39
SHANK3Q9BYB0 AC007967.2-201ENST00000432613 625 ntBASIC23.71■■□□□ 1.39
SHANK3Q9BYB0 MEAF6-205ENST00000448519 666 ntAPPRIS ALT1 TSL 1 (best) BASIC23.71■■□□□ 1.39
SHANK3Q9BYB0 SPCS2-207ENST00000530257 612 ntTSL 3 BASIC23.71■■□□□ 1.39
SHANK3Q9BYB0 HAUS8-202ENST00000448593 1545 ntAPPRIS ALT2 TSL 5 BASIC23.71■■□□□ 1.39
SHANK3Q9BYB0 MMP28-204ENST00000615136 2033 ntAPPRIS ALT2 TSL 1 (best) BASIC23.71■■□□□ 1.39
SHANK3Q9BYB0 ILDR1-203ENST00000393631 1456 ntTSL 1 (best) BASIC23.71■■□□□ 1.39
SHANK3Q9BYB0 OSM-201ENST00000215781 1854 ntAPPRIS P3 TSL 1 (best) BASIC23.71■■□□□ 1.39
SHANK3Q9BYB0 CRYL1-202ENST00000382812 1581 ntTSL 1 (best) BASIC23.71■■□□□ 1.39
SHANK3Q9BYB0 P2RX5-203ENST00000547178 1998 ntAPPRIS ALT2 TSL 1 (best) BASIC23.71■■□□□ 1.39
SHANK3Q9BYB0 AGTRAP-205ENST00000400895 786 ntTSL 2 BASIC23.7■■□□□ 1.39
SHANK3Q9BYB0 GPX1P2-201ENST00000429271 606 ntBASIC23.7■■□□□ 1.39
SHANK3Q9BYB0 MOBP-208ENST00000441980 830 ntAPPRIS P4 TSL 4 BASIC23.7■■□□□ 1.39
SHANK3Q9BYB0 SMIM27-204ENST00000453396 1003 ntAPPRIS ALT2 TSL 3 BASIC23.7■■□□□ 1.39
SHANK3Q9BYB0 AP000344.1-201ENST00000454268 641 ntTSL 5 BASIC23.7■■□□□ 1.39
SHANK3Q9BYB0 AP000344.1-202ENST00000457193 586 ntTSL 4 BASIC23.7■■□□□ 1.39
SHANK3Q9BYB0 AL110118.2-203ENST00000557574 554 ntAPPRIS P1 TSL 4 BASIC23.7■■□□□ 1.39
SHANK3Q9BYB0 SELENOM-210ENST00000611680 689 ntAPPRIS ALT2 TSL 5 BASIC23.7■■□□□ 1.39
SHANK3Q9BYB0 IFNL4-204ENST00000634967 1493 ntAPPRIS ALT2 TSL 1 (best) BASIC23.7■■□□□ 1.39
SHANK3Q9BYB0 MON1A-202ENST00000417270 2527 ntAPPRIS ALT2 TSL 5 BASIC23.7■■□□□ 1.39
SHANK3Q9BYB0 AOC1-202ENST00000416793 2453 ntTSL 1 (best) BASIC23.7■■□□□ 1.38
SHANK3Q9BYB0 AC093484.2-201ENST00000580996 2166 ntBASIC23.7■■□□□ 1.38
SHANK3Q9BYB0 GPANK1-201ENST00000375893 1598 ntAPPRIS P1 TSL 5 BASIC23.7■■□□□ 1.38
SHANK3Q9BYB0 HSP90B1-210ENST00000614327 1338 ntTSL 1 (best) BASIC23.7■■□□□ 1.38
SHANK3Q9BYB0 ANTXR1-203ENST00000409829 2221 ntTSL 1 (best) BASIC23.7■■□□□ 1.38
SHANK3Q9BYB0 AP002414.3-201ENST00000589352 1468 ntBASIC23.7■■□□□ 1.38
SHANK3Q9BYB0 NUDT6-201ENST00000304430 1169 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
SHANK3Q9BYB0 MRPS16-201ENST00000372940 866 ntTSL 2 BASIC23.7■■□□□ 1.38
SHANK3Q9BYB0 SPDYC-201ENST00000377185 991 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
SHANK3Q9BYB0 UPF3AP3-201ENST00000420996 769 ntBASIC23.7■■□□□ 1.38
SHANK3Q9BYB0 LINC01705-201ENST00000438158 562 ntTSL 2 BASIC23.7■■□□□ 1.38
SHANK3Q9BYB0 FAM71E1-202ENST00000595790 1225 ntAPPRIS P3 TSL 1 (best) BASIC23.7■■□□□ 1.38
SHANK3Q9BYB0 NXNL2-205ENST00000618633 739 ntTSL 5 BASIC23.7■■□□□ 1.38
SHANK3Q9BYB0 HMGN3-203ENST00000620514 1010 ntTSL 3 BASIC23.7■■□□□ 1.38
SHANK3Q9BYB0 ISCA1-203ENST00000375991 1958 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
SHANK3Q9BYB0 MATN4-202ENST00000360607 2127 ntTSL 1 (best) BASIC23.7■■□□□ 1.38
SHANK3Q9BYB0 CHMP6-201ENST00000325167 1664 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
SHANK3Q9BYB0 FAM3A-201ENST00000322269 1815 ntTSL 5 BASIC23.69■■□□□ 1.38
SHANK3Q9BYB0 CLDN14-203ENST00000399136 1330 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
SHANK3Q9BYB0 AIRE-201ENST00000291582 2257 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
SHANK3Q9BYB0 LCE1D-201ENST00000326233 430 ntAPPRIS P1 TSL 5 BASIC23.69■■□□□ 1.38
SHANK3Q9BYB0 QRFP-201ENST00000343079 411 ntAPPRIS P1 BASIC23.69■■□□□ 1.38
SHANK3Q9BYB0 DPM3-203ENST00000368400 409 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
SHANK3Q9BYB0 ICAM4-202ENST00000380770 1211 ntAPPRIS P3 TSL 1 (best) BASIC23.69■■□□□ 1.38
SHANK3Q9BYB0 UBE2J2-204ENST00000400929 1057 ntTSL 3 BASIC23.69■■□□□ 1.38
SHANK3Q9BYB0 AL591424.1-201ENST00000442569 1213 ntBASIC23.69■■□□□ 1.38
SHANK3Q9BYB0 RPL8-207ENST00000528957 1015 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
SHANK3Q9BYB0 HAGH-208ENST00000566709 1291 ntTSL 5 BASIC23.69■■□□□ 1.38
SHANK3Q9BYB0 RNF151-202ENST00000569210 853 ntTSL 2 BASIC23.69■■□□□ 1.38
SHANK3Q9BYB0 AC005944.1-201ENST00000592758 564 ntTSL 3 BASIC23.69■■□□□ 1.38
SHANK3Q9BYB0 CCDC62-204ENST00000392441 2936 ntAPPRIS ALT2 TSL 5 BASIC23.69■■□□□ 1.38
SHANK3Q9BYB0 SLC35B2-207ENST00000619636 2063 ntTSL 1 (best) BASIC23.68■■□□□ 1.38
SHANK3Q9BYB0 CHRNA10-201ENST00000250699 1945 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
SHANK3Q9BYB0 MYLKP1-201ENST00000509077 1580 ntBASIC23.68■■□□□ 1.38
SHANK3Q9BYB0 TTBK1-202ENST00000304139 2449 ntTSL 5 BASIC23.68■■□□□ 1.38
SHANK3Q9BYB0 ACTRT2-201ENST00000378404 1421 ntAPPRIS P1 BASIC23.68■■□□□ 1.38
SHANK3Q9BYB0 AP000688.4-201ENST00000436303 446 ntTSL 3 BASIC23.68■■□□□ 1.38
SHANK3Q9BYB0 FAM172A-207ENST00000509739 1031 ntTSL 2 BASIC23.68■■□□□ 1.38
SHANK3Q9BYB0 CHMP1A-208ENST00000550102 803 ntTSL 5 BASIC23.68■■□□□ 1.38
SHANK3Q9BYB0 AC135776.2-201ENST00000567803 714 ntTSL 4 BASIC23.68■■□□□ 1.38
SHANK3Q9BYB0 MTDHP4-201ENST00000600287 670 ntBASIC23.68■■□□□ 1.38
SHANK3Q9BYB0 OGFOD2-211ENST00000538628 1696 ntTSL 1 (best) BASIC23.68■■□□□ 1.38
SHANK3Q9BYB0 PYCR2-208ENST00000612039 1549 ntTSL 3 BASIC23.68■■□□□ 1.38
SHANK3Q9BYB0 PYCR2-209ENST00000612651 1538 ntTSL 5 BASIC23.68■■□□□ 1.38
SHANK3Q9BYB0 PRELID3B-201ENST00000355937 2626 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
SHANK3Q9BYB0 PORCN-205ENST00000367574 1368 ntAPPRIS ALT1 TSL 1 (best) BASIC23.68■■□□□ 1.38
SHANK3Q9BYB0 PORCN-214ENST00000537758 1371 ntAPPRIS ALT1 TSL 1 (best) BASIC23.68■■□□□ 1.38
SHANK3Q9BYB0 PEPD-203ENST00000436370 1638 ntTSL 2 BASIC23.68■■□□□ 1.38
SHANK3Q9BYB0 POLR2M-206ENST00000494490 1648 ntTSL 5 BASIC23.68■■□□□ 1.38
SHANK3Q9BYB0 P2RX5-202ENST00000345901 2031 ntTSL 5 BASIC23.68■■□□□ 1.38
Retrieved 100 of 98,524 protein–RNA pairs in 30.1 ms