Protein–RNA interactions for Protein: Q9BWH6

RPAP1, RNA polymerase II-associated protein 1, humanhuman

Predicted RBP Predictions only

Length 1,393 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPAP1Q9BWH6 FCER2-205ENST00000597921 1560 ntAPPRIS P2 TSL 1 (best) BASIC22.31■■□□□ 1.16
RPAP1Q9BWH6 AAED1-201ENST00000375234 2863 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
RPAP1Q9BWH6 PKMYT1-203ENST00000431515 2308 ntTSL 2 BASIC22.31■■□□□ 1.16
RPAP1Q9BWH6 ADORA1-202ENST00000337894 2919 ntAPPRIS P1 TSL 2 BASIC22.31■■□□□ 1.16
RPAP1Q9BWH6 LIN28B-AS1-203ENST00000636682 1797 ntTSL 3 BASIC22.31■■□□□ 1.16
RPAP1Q9BWH6 MAP3K7CL-206ENST00000399928 1904 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
RPAP1Q9BWH6 GUCA1A-205ENST00000541991 1921 ntTSL 5 BASIC22.31■■□□□ 1.16
RPAP1Q9BWH6 COMP-202ENST00000425807 2292 ntTSL 2 BASIC22.3■■□□□ 1.16
RPAP1Q9BWH6 GLYCTK-202ENST00000436784 1982 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
RPAP1Q9BWH6 CHTOP-207ENST00000614256 1840 ntTSL 3 BASIC22.3■■□□□ 1.16
RPAP1Q9BWH6 NAA50-209ENST00000497525 1385 ntTSL 2 BASIC22.3■■□□□ 1.16
RPAP1Q9BWH6 MIR4300HG-201ENST00000500502 1397 ntTSL 1 (best) BASIC22.3■■□□□ 1.16
RPAP1Q9BWH6 CHD1L-204ENST00000431239 2907 ntTSL 5 BASIC22.3■■□□□ 1.16
RPAP1Q9BWH6 AL499627.1-201ENST00000569373 2188 ntBASIC22.3■■□□□ 1.16
RPAP1Q9BWH6 OSM-201ENST00000215781 1854 ntAPPRIS P3 TSL 1 (best) BASIC22.3■■□□□ 1.16
RPAP1Q9BWH6 NUTM2F-202ENST00000341207 2516 ntAPPRIS ALT2 TSL 5 BASIC22.3■■□□□ 1.16
RPAP1Q9BWH6 NUTM2G-202ENST00000372322 2516 ntAPPRIS ALT2 TSL 5 BASIC22.3■■□□□ 1.16
RPAP1Q9BWH6 BAIAP2-203ENST00000416299 1442 ntTSL 2 BASIC22.3■■□□□ 1.16
RPAP1Q9BWH6 EWSR1-207ENST00000406548 2207 ntAPPRIS ALT2 TSL 1 (best) BASIC22.3■■□□□ 1.16
RPAP1Q9BWH6 DCTN3-201ENST00000259632 808 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
RPAP1Q9BWH6 TSPY8-203ENST00000383005 435 ntTSL 5 BASIC22.3■■□□□ 1.16
RPAP1Q9BWH6 UFSP1-201ENST00000388761 996 ntAPPRIS P1 BASIC22.3■■□□□ 1.16
RPAP1Q9BWH6 ELP6-205ENST00000439305 880 ntTSL 2 BASIC22.3■■□□□ 1.16
RPAP1Q9BWH6 SKP2-204ENST00000508514 821 ntTSL 3 BASIC22.3■■□□□ 1.16
RPAP1Q9BWH6 KRT8P26-201ENST00000534154 1276 ntBASIC22.3■■□□□ 1.16
RPAP1Q9BWH6 HOXB8-203ENST00000576562 743 ntAPPRIS ALT1 TSL 2 BASIC22.3■■□□□ 1.16
RPAP1Q9BWH6 SERPINA4-201ENST00000298841 1784 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
RPAP1Q9BWH6 PTN-201ENST00000348225 1614 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
RPAP1Q9BWH6 AC034236.2-201ENST00000606662 1610 ntBASIC22.3■■□□□ 1.16
RPAP1Q9BWH6 KIF1BP-204ENST00000626493 2337 ntTSL 5 BASIC22.3■■□□□ 1.16
RPAP1Q9BWH6 FBXL17-205ENST00000542267 5188 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
RPAP1Q9BWH6 AC011416.4-201ENST00000639283 2195 ntTSL 5 BASIC22.3■■□□□ 1.16
RPAP1Q9BWH6 TSSC4-201ENST00000333256 1686 ntAPPRIS P3 TSL 1 (best) BASIC22.3■■□□□ 1.16
RPAP1Q9BWH6 ISL2-201ENST00000290759 1881 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
RPAP1Q9BWH6 MEGF6-202ENST00000356575 5455 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
RPAP1Q9BWH6 ETV7-202ENST00000340181 1719 ntAPPRIS P3 TSL 1 (best) BASIC22.3■■□□□ 1.16
RPAP1Q9BWH6 DOCK9-206ENST00000427887 4176 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
RPAP1Q9BWH6 ITPK1-202ENST00000354313 2803 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
RPAP1Q9BWH6 GAS7-205ENST00000542249 1799 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
RPAP1Q9BWH6 DHRS12-201ENST00000218981 1970 ntTSL 2 BASIC22.29■■□□□ 1.16
RPAP1Q9BWH6 TUBA4A-201ENST00000248437 2162 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
RPAP1Q9BWH6 BANP-202ENST00000355022 2164 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
RPAP1Q9BWH6 PDLIM4-202ENST00000379018 1006 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
RPAP1Q9BWH6 MIR662-201ENST00000384847 95 ntBASIC22.29■■□□□ 1.16
RPAP1Q9BWH6 CHCHD2P8-201ENST00000429873 447 ntBASIC22.29■■□□□ 1.16
RPAP1Q9BWH6 AC135586.2-201ENST00000537262 567 ntAPPRIS P1 TSL 4 BASIC22.29■■□□□ 1.16
RPAP1Q9BWH6 C14orf144-201ENST00000553757 537 ntTSL 4 BASIC22.29■■□□□ 1.16
RPAP1Q9BWH6 IFNL4-202ENST00000616270 1132 ntAPPRIS ALT2 TSL 1 (best) BASIC22.29■■□□□ 1.16
RPAP1Q9BWH6 ANKRD36-207ENST00000639293 1168 ntAPPRIS ALT2 TSL 5 BASIC22.29■■□□□ 1.16
RPAP1Q9BWH6 MAP2K5-202ENST00000340972 1491 ntTSL 2 BASIC22.29■■□□□ 1.16
RPAP1Q9BWH6 MATN4-203ENST00000372754 2200 ntAPPRIS ALT2 TSL 5 BASIC22.29■■□□□ 1.16
RPAP1Q9BWH6 ATP1B1-202ENST00000367816 2608 ntAPPRIS P1 TSL 5 BASIC22.29■■□□□ 1.16
RPAP1Q9BWH6 HNRNPUL2-201ENST00000301785 5106 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
RPAP1Q9BWH6 TOX2-205ENST00000423191 1709 ntTSL 2 BASIC22.29■■□□□ 1.16
RPAP1Q9BWH6 AC138028.1-201ENST00000333666 2137 ntTSL 2 BASIC22.29■■□□□ 1.16
RPAP1Q9BWH6 EPB41L2-211ENST00000525271 2568 ntTSL 2 BASIC22.29■■□□□ 1.16
RPAP1Q9BWH6 VAV1-204ENST00000596764 2775 ntTSL 2 BASIC22.29■■□□□ 1.16
RPAP1Q9BWH6 FBRS-202ENST00000356166 5200 ntTSL 5 BASIC22.29■■□□□ 1.16
RPAP1Q9BWH6 CD55-206ENST00000391921 2433 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
RPAP1Q9BWH6 AL365232.1-201ENST00000423730 1636 ntAPPRIS P1 TSL 5 BASIC22.28■■□□□ 1.16
RPAP1Q9BWH6 ATRIP-202ENST00000346691 2509 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
RPAP1Q9BWH6 NDUFS7-201ENST00000233627 1039 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
RPAP1Q9BWH6 HIST1H2AI-201ENST00000358739 503 ntAPPRIS P1 BASIC22.28■■□□□ 1.16
RPAP1Q9BWH6 CLDN7-204ENST00000571881 735 ntTSL 3 BASIC22.28■■□□□ 1.16
RPAP1Q9BWH6 AC015961.2-201ENST00000589281 701 ntTSL 3 BASIC22.28■■□□□ 1.16
RPAP1Q9BWH6 AC034238.1-212ENST00000596137 723 ntTSL 5 BASIC22.28■■□□□ 1.16
RPAP1Q9BWH6 DHRS4L2-211ENST00000621761 1049 ntTSL 5 BASIC22.28■■□□□ 1.16
RPAP1Q9BWH6 AKAP17A-201ENST00000313871 3204 ntAPPRIS P2 TSL 1 (best) BASIC22.28■■□□□ 1.16
RPAP1Q9BWH6 CLN3-204ENST00000357857 1720 ntTSL 2 BASIC22.28■■□□□ 1.16
RPAP1Q9BWH6 NCK1-207ENST00000481752 1971 ntAPPRIS P1 TSL 5 BASIC22.28■■□□□ 1.16
RPAP1Q9BWH6 TCP11-201ENST00000244645 2018 ntAPPRIS P3 TSL 1 (best) BASIC22.28■■□□□ 1.16
RPAP1Q9BWH6 TRIM61-201ENST00000329314 1582 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
RPAP1Q9BWH6 EXOSC3-201ENST00000327304 1806 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
RPAP1Q9BWH6 ZNF395-211ENST00000523202 2068 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
RPAP1Q9BWH6 ZGPAT-202ENST00000355969 1871 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
RPAP1Q9BWH6 SEC14L2-215ENST00000617837 2632 ntTSL 2 BASIC22.28■■□□□ 1.16
RPAP1Q9BWH6 TNFSF9-201ENST00000245817 1665 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
RPAP1Q9BWH6 ISYNA1-206ENST00000578963 1691 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
RPAP1Q9BWH6 STRN4-202ENST00000391910 3628 ntAPPRIS ALT1 TSL 5 BASIC22.28■■□□□ 1.16
RPAP1Q9BWH6 LETM1P2-201ENST00000597330 2178 ntBASIC22.28■■□□□ 1.16
RPAP1Q9BWH6 MAFG-202ENST00000392366 1743 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
RPAP1Q9BWH6 MTERF2-202ENST00000392830 1763 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
RPAP1Q9BWH6 CENPX-201ENST00000306704 751 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
RPAP1Q9BWH6 DBNDD2-202ENST00000360981 1078 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
RPAP1Q9BWH6 CORT-201ENST00000377049 1130 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
RPAP1Q9BWH6 LENG8-AS1-201ENST00000416022 582 ntTSL 3 BASIC22.27■■□□□ 1.16
RPAP1Q9BWH6 LINC01534-202ENST00000433232 554 ntTSL 3 BASIC22.27■■□□□ 1.16
RPAP1Q9BWH6 LINC01128-207ENST00000449005 874 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
RPAP1Q9BWH6 NDUFB9-202ENST00000517367 636 ntTSL 3 BASIC22.27■■□□□ 1.16
RPAP1Q9BWH6 ANKRD34C-AS1-201ENST00000557790 594 ntTSL 3 BASIC22.27■■□□□ 1.16
RPAP1Q9BWH6 AP003774.1-201ENST00000316124 2340 ntTSL 2 BASIC22.27■■□□□ 1.16
RPAP1Q9BWH6 ZNF668-208ENST00000538906 2865 ntAPPRIS P1 TSL 2 BASIC22.27■■□□□ 1.16
RPAP1Q9BWH6 C5orf30-203ENST00000515669 1573 ntAPPRIS P1 TSL 3 BASIC22.27■■□□□ 1.16
RPAP1Q9BWH6 KRBOX1-AS1-201ENST00000447834 2134 ntTSL 2 BASIC22.27■■□□□ 1.16
RPAP1Q9BWH6 CLASRP-201ENST00000221455 2234 ntAPPRIS P2 TSL 1 (best) BASIC22.27■■□□□ 1.16
RPAP1Q9BWH6 SYTL1-208ENST00000543823 2229 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
RPAP1Q9BWH6 PACRGL-203ENST00000444671 1720 ntTSL 2 BASIC22.27■■□□□ 1.16
RPAP1Q9BWH6 FOXD4L6-201ENST00000622588 2034 ntAPPRIS P1 BASIC22.27■■□□□ 1.16
RPAP1Q9BWH6 NPEPL1-203ENST00000525817 1780 ntTSL 2 BASIC22.27■■□□□ 1.16
RPAP1Q9BWH6 CGRRF1-201ENST00000216420 2057 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
Retrieved 100 of 98,524 protein–RNA pairs in 21.6 ms