Protein–RNA interactions for Protein: Q99626

CDX2, Homeobox protein CDX-2, humanhuman

Predicted RBP Predictions only

Length 313 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX2Q99626 PTGES2-202ENST00000338961 2331 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
CDX2Q99626 DNAAF3-202ENST00000455045 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC19.13■□□□□ 0.65
CDX2Q99626 ME2-216ENST00000639850 2331 ntTSL 5 BASIC19.13■□□□□ 0.65
CDX2Q99626 PTPRJ-201ENST00000418331 5122 ntAPPRIS P2 TSL 1 (best) BASIC19.13■□□□□ 0.65
CDX2Q99626 PCSK6-215ENST00000611967 3336 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
CDX2Q99626 PHLDB3-201ENST00000292140 2591 ntAPPRIS P1 TSL 5 BASIC19.12■□□□□ 0.65
CDX2Q99626 KMT5C-201ENST00000255613 2308 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
CDX2Q99626 RTP5-201ENST00000343216 2296 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
CDX2Q99626 PRR14-202ENST00000300835 2198 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
CDX2Q99626 BEST2-201ENST00000042931 1908 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
CDX2Q99626 CREB3-201ENST00000353704 1832 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
CDX2Q99626 CBWD1-202ENST00000356521 1706 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
CDX2Q99626 SDCBP2-204ENST00000381812 1550 ntAPPRIS P1 TSL 5 BASIC19.12■□□□□ 0.65
CDX2Q99626 AC006974.1-201ENST00000637928 1501 ntTSL 5 BASIC19.12■□□□□ 0.65
CDX2Q99626 PRR22-202ENST00000419421 1392 ntAPPRIS P1 TSL 2 BASIC19.12■□□□□ 0.65
CDX2Q99626 CABP5-201ENST00000293255 1257 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
CDX2Q99626 CTHRC1-201ENST00000330295 1271 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
CDX2Q99626 GUK1-203ENST00000366718 1275 ntAPPRIS P3 TSL 3 BASIC19.12■□□□□ 0.65
CDX2Q99626 AC236430.1-201ENST00000402231 743 ntBASIC19.12■□□□□ 0.65
CDX2Q99626 PIK3CD-AS2-201ENST00000415330 939 ntTSL 5 BASIC19.12■□□□□ 0.65
CDX2Q99626 AL096828.1-201ENST00000423020 542 ntTSL 4 BASIC19.12■□□□□ 0.65
CDX2Q99626 AL022068.1-202ENST00000432171 794 ntTSL 3 BASIC19.12■□□□□ 0.65
CDX2Q99626 CTDSP1-204ENST00000443891 1109 ntTSL 3 BASIC19.12■□□□□ 0.65
CDX2Q99626 SIGLEC30P-201ENST00000455569 941 ntBASIC19.12■□□□□ 0.65
CDX2Q99626 SEC24B-AS1-201ENST00000499359 957 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
CDX2Q99626 SEC24B-AS1-203ENST00000505895 800 ntTSL 4 BASIC19.12■□□□□ 0.65
CDX2Q99626 SEC24B-AS1-204ENST00000510971 554 ntTSL 4 BASIC19.12■□□□□ 0.65
CDX2Q99626 AC093214.1-201ENST00000511688 1107 ntBASIC19.12■□□□□ 0.65
CDX2Q99626 ARMC7-204ENST00000582136 1204 ntTSL 2 BASIC19.12■□□□□ 0.65
CDX2Q99626 AL359881.2-201ENST00000602973 570 ntBASIC19.12■□□□□ 0.65
CDX2Q99626 AL513210.1-201ENST00000629608 234 ntBASIC19.12■□□□□ 0.65
CDX2Q99626 DTNB-207ENST00000405222 2273 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
CDX2Q99626 LYN-202ENST00000519728 2297 ntAPPRIS P3 TSL 1 (best) BASIC19.12■□□□□ 0.65
CDX2Q99626 BAIAP2L2-201ENST00000332536 2065 ntAPPRIS ALT2 TSL 5 BASIC19.12■□□□□ 0.65
CDX2Q99626 MAP3K11-210ENST00000532507 1812 ntTSL 2 BASIC19.11■□□□□ 0.65
CDX2Q99626 CHMP6-201ENST00000325167 1664 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
CDX2Q99626 C21orf58-205ENST00000397683 1674 ntAPPRIS ALT2 TSL 2 BASIC19.11■□□□□ 0.65
CDX2Q99626 TMPRSS6-207ENST00000442782 1695 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
CDX2Q99626 KLK5-201ENST00000336334 1563 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
CDX2Q99626 CHODL-201ENST00000299295 2548 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
CDX2Q99626 PSMD11-202ENST00000457654 2159 ntAPPRIS P1 TSL 2 BASIC19.11■□□□□ 0.65
CDX2Q99626 TMEM41A-201ENST00000296254 1060 ntTSL 2 BASIC19.11■□□□□ 0.65
CDX2Q99626 DUSP12-201ENST00000367943 1270 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
CDX2Q99626 AMACR-204ENST00000382085 1195 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
CDX2Q99626 AC245100.3-201ENST00000441281 285 ntBASIC19.11■□□□□ 0.65
CDX2Q99626 OARD1-208ENST00000469104 704 ntTSL 2 BASIC19.11■□□□□ 0.65
CDX2Q99626 NDUFA6-202ENST00000498737 1256 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
CDX2Q99626 TRMT112-202ENST00000535126 704 ntTSL 2 BASIC19.11■□□□□ 0.65
CDX2Q99626 ZFPM1-203ENST00000562437 502 ntTSL 2 BASIC19.11■□□□□ 0.65
CDX2Q99626 FXYD1-208ENST00000589209 428 ntAPPRIS P1 TSL 5 BASIC19.11■□□□□ 0.65
CDX2Q99626 NDUFA6-203ENST00000602404 1080 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
CDX2Q99626 ZEB1-AS1-206ENST00000606250 573 ntTSL 5 BASIC19.11■□□□□ 0.65
CDX2Q99626 FXYD1-211ENST00000612146 690 ntAPPRIS P1 TSL 3 BASIC19.11■□□□□ 0.65
CDX2Q99626 RBP1-207ENST00000619087 516 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
CDX2Q99626 OARD1-216ENST00000628419 1188 ntTSL 5 BASIC19.11■□□□□ 0.65
CDX2Q99626 CBR1-205ENST00000530908 1924 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
CDX2Q99626 AC020907.5-201ENST00000624372 1936 ntBASIC19.11■□□□□ 0.65
CDX2Q99626 ANAPC4-201ENST00000315368 2685 ntAPPRIS P3 TSL 1 (best) BASIC19.11■□□□□ 0.65
CDX2Q99626 ZFAND6-201ENST00000261749 1814 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
CDX2Q99626 GHDC-212ENST00000593209 1827 ntTSL 5 BASIC19.11■□□□□ 0.65
CDX2Q99626 AC105001.2-201ENST00000554914 1753 ntAPPRIS P1 TSL 2 BASIC19.11■□□□□ 0.65
CDX2Q99626 PHACTR2-203ENST00000367584 2490 ntAPPRIS ALT2 TSL 5 BASIC19.11■□□□□ 0.65
CDX2Q99626 KRT13-201ENST00000246635 1699 ntAPPRIS P4 TSL 1 (best) BASIC19.11■□□□□ 0.65
CDX2Q99626 PDZD3-201ENST00000322712 2204 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
CDX2Q99626 TNIP1-205ENST00000518977 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC19.1■□□□□ 0.65
CDX2Q99626 RAB7A-203ENST00000482525 1589 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
CDX2Q99626 MANBAL-204ENST00000397151 1503 ntAPPRIS P1 TSL 3 BASIC19.1■□□□□ 0.65
CDX2Q99626 MANBAL-205ENST00000397152 1539 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
CDX2Q99626 TUSC3-204ENST00000506802 1546 ntTSL 5 BASIC19.1■□□□□ 0.65
CDX2Q99626 RABEPK-206ENST00000628863 1537 ntTSL 5 BASIC19.1■□□□□ 0.65
CDX2Q99626 FBXO27-202ENST00000509137 2130 ntAPPRIS P2 TSL 1 (best) BASIC19.1■□□□□ 0.65
CDX2Q99626 C17orf58-204ENST00000580729 2065 ntTSL 5 BASIC19.1■□□□□ 0.65
CDX2Q99626 TMED9-201ENST00000332598 1473 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
CDX2Q99626 TRIP4-201ENST00000261884 2045 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
CDX2Q99626 RGMA-210ENST00000557301 1929 ntAPPRIS ALT2 TSL 2 BASIC19.1■□□□□ 0.65
CDX2Q99626 SSH1-209ENST00000551165 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC19.1■□□□□ 0.65
CDX2Q99626 C16orf92-201ENST00000300575 895 ntAPPRIS P2 TSL 1 (best) BASIC19.1■□□□□ 0.65
CDX2Q99626 OR8S1-201ENST00000310194 1080 ntBASIC19.1■□□□□ 0.65
CDX2Q99626 XAGE1A-203ENST00000375602 614 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
CDX2Q99626 XAGE1B-203ENST00000375616 614 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
CDX2Q99626 PRUNE2-202ENST00000376713 1069 ntTSL 5 BASIC19.1■□□□□ 0.65
CDX2Q99626 HMGN4-201ENST00000377575 1225 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
CDX2Q99626 AC004461.1-201ENST00000412461 403 ntBASIC19.1■□□□□ 0.65
CDX2Q99626 FAM58CP-201ENST00000435741 640 ntBASIC19.1■□□□□ 0.65
CDX2Q99626 LINC01812-201ENST00000457448 725 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
CDX2Q99626 GSTZ1-207ENST00000553586 979 ntAPPRIS ALT1 TSL 5 BASIC19.1■□□□□ 0.65
CDX2Q99626 AL391261.2-201ENST00000554907 773 ntTSL 2 BASIC19.1■□□□□ 0.65
CDX2Q99626 PDPK2P-202ENST00000562415 1191 ntBASIC19.1■□□□□ 0.65
CDX2Q99626 RAMP2-205ENST00000589683 858 ntTSL 3 BASIC19.1■□□□□ 0.65
CDX2Q99626 HDDC2-203ENST00000608284 538 ntTSL 3 BASIC19.1■□□□□ 0.65
CDX2Q99626 AC063977.6-201ENST00000600074 1763 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
CDX2Q99626 RUNX2-210ENST00000576263 2256 ntTSL 5 BASIC19.1■□□□□ 0.65
CDX2Q99626 RTN1-202ENST00000342503 1703 ntAPPRIS ALT1 TSL 1 (best) BASIC19.1■□□□□ 0.65
CDX2Q99626 ZNF580-202ENST00000543039 1707 ntAPPRIS P1 BASIC19.1■□□□□ 0.65
CDX2Q99626 LINC00466-207ENST00000634725 1736 ntTSL 5 BASIC19.1■□□□□ 0.65
CDX2Q99626 TAF6L-201ENST00000294168 2116 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
CDX2Q99626 SOX3-201ENST00000370536 2132 ntAPPRIS P1 BASIC19.1■□□□□ 0.65
CDX2Q99626 AL163051.1-201ENST00000569214 1512 ntBASIC19.1■□□□□ 0.65
CDX2Q99626 DTWD2-203ENST00000510708 2307 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
CDX2Q99626 DET1-207ENST00000564406 2315 ntTSL 2 BASIC19.09■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 64.2 ms