Protein–RNA interactions for Protein: Q96M19

LINC00477, Putative transmembrane protein encoded by LINC00477, humanhuman

Predictions only

Length 166 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00477Q96M19 POR-209ENST00000439269 1858 ntTSL 2 BASIC13.8□□□□□ -0.2
LINC00477Q96M19 STXBP2-203ENST00000441779 1914 ntTSL 2 BASIC13.8□□□□□ -0.2
LINC00477Q96M19 SEMA6B-201ENST00000586582 3986 ntAPPRIS P2 TSL 1 (best) BASIC13.8□□□□□ -0.2
LINC00477Q96M19 A4GALT-201ENST00000249005 2020 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
LINC00477Q96M19 STEAP1B-201ENST00000404369 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC13.8□□□□□ -0.2
LINC00477Q96M19 ARSA-201ENST00000216124 2050 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
LINC00477Q96M19 PPP1R9B-202ENST00000612501 4167 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
LINC00477Q96M19 STYXL1-208ENST00000451157 1570 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
LINC00477Q96M19 SCOC-208ENST00000510586 2193 ntAPPRIS ALT1 TSL 5 BASIC13.79□□□□□ -0.2
LINC00477Q96M19 CD276-201ENST00000318424 2738 ntTSL 5 BASIC13.79□□□□□ -0.2
LINC00477Q96M19 FCGBP-203ENST00000620799 4926 ntTSL 5 BASIC13.79□□□□□ -0.2
LINC00477Q96M19 SLC35A3-217ENST00000639807 2767 ntTSL 5 BASIC13.79□□□□□ -0.2
LINC00477Q96M19 CDK4-202ENST00000312990 1650 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
LINC00477Q96M19 TNFAIP1-202ENST00000544907 1656 ntTSL 2 BASIC13.79□□□□□ -0.2
LINC00477Q96M19 AC090206.1-201ENST00000615734 1678 ntTSL 5 BASIC13.79□□□□□ -0.2
LINC00477Q96M19 PLEKHB1-203ENST00000398492 2275 ntAPPRIS ALT1 TSL 1 (best) BASIC13.79□□□□□ -0.2
LINC00477Q96M19 DHRS2-201ENST00000250383 1705 ntAPPRIS P3 TSL 1 (best) BASIC13.79□□□□□ -0.2
LINC00477Q96M19 CIZ1-226ENST00000629610 2855 ntAPPRIS ALT2 TSL 2 BASIC13.79□□□□□ -0.2
LINC00477Q96M19 CAPN5-205ENST00000529629 2333 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
LINC00477Q96M19 VKORC1L1-201ENST00000360768 5899 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
LINC00477Q96M19 MARCH1-203ENST00000503008 5877 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
LINC00477Q96M19 DNAJC8-201ENST00000263697 1759 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
LINC00477Q96M19 EIPR1-201ENST00000382125 1766 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
LINC00477Q96M19 RALGPS1-208ENST00000424082 2362 ntTSL 2 BASIC13.79□□□□□ -0.2
LINC00477Q96M19 KRT16P6-201ENST00000417510 1873 ntTSL 5 BASIC13.79□□□□□ -0.2
LINC00477Q96M19 FLYWCH1P1-201ENST00000460917 1874 ntBASIC13.79□□□□□ -0.2
LINC00477Q96M19 TEFM-205ENST00000581216 1891 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
LINC00477Q96M19 MYO1B-202ENST00000339514 5026 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
LINC00477Q96M19 PTPA-223ENST00000452489 2526 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
LINC00477Q96M19 NUDT8-202ENST00000376693 728 ntAPPRIS ALT2 TSL 2 BASIC13.79□□□□□ -0.2
LINC00477Q96M19 SEC61A2-206ENST00000379051 707 ntTSL 3 BASIC13.79□□□□□ -0.2
LINC00477Q96M19 TRPT1-203ENST00000394547 865 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
LINC00477Q96M19 AL023284.2-201ENST00000405850 579 ntBASIC13.79□□□□□ -0.2
LINC00477Q96M19 SAPCD2P4-201ENST00000424595 1171 ntBASIC13.79□□□□□ -0.2
LINC00477Q96M19 AC073050.1-201ENST00000442316 462 ntTSL 3 BASIC13.79□□□□□ -0.2
LINC00477Q96M19 RBCK1-213ENST00000475269 1200 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
LINC00477Q96M19 AC091153.3-201ENST00000497885 472 ntTSL 2 BASIC13.79□□□□□ -0.2
LINC00477Q96M19 CNOT8-224ENST00000523698 862 ntTSL 2 BASIC13.79□□□□□ -0.2
LINC00477Q96M19 TMEM72-203ENST00000544540 1018 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
LINC00477Q96M19 FLT3LG-211ENST00000600429 984 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
LINC00477Q96M19 KANK3-205ENST00000610351 1191 ntTSL 5 BASIC13.79□□□□□ -0.2
LINC00477Q96M19 PDZD8-201ENST00000334464 9699 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
LINC00477Q96M19 SRI-203ENST00000419179 1307 ntTSL 2 BASIC13.79□□□□□ -0.2
LINC00477Q96M19 OARD1-202ENST00000424266 1337 ntAPPRIS P1 TSL 2 BASIC13.79□□□□□ -0.2
LINC00477Q96M19 XKR6-203ENST00000416569 3382 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
LINC00477Q96M19 FERMT2-204ENST00000399304 2082 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
LINC00477Q96M19 ETS1-207ENST00000531611 2134 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
LINC00477Q96M19 HGFAC-201ENST00000382774 2159 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
LINC00477Q96M19 RTN4-207ENST00000402434 1456 ntTSL 5 BASIC13.79□□□□□ -0.2
LINC00477Q96M19 HEXIM2-201ENST00000307275 1528 ntAPPRIS P1 TSL 2 BASIC13.79□□□□□ -0.2
LINC00477Q96M19 ZNF419-201ENST00000221735 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC13.79□□□□□ -0.2
LINC00477Q96M19 GMCL1P1-201ENST00000463439 1581 ntBASIC13.79□□□□□ -0.2
LINC00477Q96M19 PRDM12-201ENST00000253008 2476 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
LINC00477Q96M19 TMPRSS9-205ENST00000613480 2568 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
LINC00477Q96M19 FAM208B-201ENST00000328090 8626 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
LINC00477Q96M19 SKOR1-204ENST00000554240 3597 ntAPPRIS ALT2 TSL 5 BASIC13.78□□□□□ -0.2
LINC00477Q96M19 GPANK1-204ENST00000375900 1814 ntAPPRIS P1 TSL 2 BASIC13.78□□□□□ -0.2
LINC00477Q96M19 RNF135-201ENST00000324689 1905 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
LINC00477Q96M19 VPS37B-201ENST00000267202 3028 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
LINC00477Q96M19 TRAF3IP1-201ENST00000373327 4279 ntAPPRIS P3 TSL 1 (best) BASIC13.78□□□□□ -0.2
LINC00477Q96M19 AP001476.1-201ENST00000451618 2198 ntTSL 2 BASIC13.78□□□□□ -0.2
LINC00477Q96M19 RBCK1-203ENST00000382181 2208 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
LINC00477Q96M19 TSPYL5-201ENST00000322128 4491 ntAPPRIS P1 BASIC13.78□□□□□ -0.2
LINC00477Q96M19 COL4A3BP-201ENST00000261415 2262 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
LINC00477Q96M19 NOV-201ENST00000259526 2522 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
LINC00477Q96M19 HAS3-201ENST00000219322 1163 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
LINC00477Q96M19 MAL-201ENST00000309988 1112 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
LINC00477Q96M19 MCAT-202ENST00000327555 1134 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
LINC00477Q96M19 LCE2B-201ENST00000368780 612 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
LINC00477Q96M19 BUB3-202ENST00000368859 667 ntTSL 3 BASIC13.78□□□□□ -0.2
LINC00477Q96M19 FAM197Y1-201ENST00000421178 764 ntBASIC13.78□□□□□ -0.2
LINC00477Q96M19 FAM201B-201ENST00000458407 597 ntBASIC13.78□□□□□ -0.2
LINC00477Q96M19 WDR86-AS1-203ENST00000480632 704 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
LINC00477Q96M19 SFXN1-203ENST00000502393 637 ntTSL 2 BASIC13.78□□□□□ -0.2
LINC00477Q96M19 SLC25A1P4-201ENST00000567977 778 ntBASIC13.78□□□□□ -0.2
LINC00477Q96M19 AC007493.2-201ENST00000568427 478 ntTSL 3 BASIC13.78□□□□□ -0.2
LINC00477Q96M19 SPIB-206ENST00000596074 847 ntTSL 2 BASIC13.78□□□□□ -0.2
LINC00477Q96M19 CD177P1-201ENST00000606252 935 ntBASIC13.78□□□□□ -0.2
LINC00477Q96M19 AP001412.1-201ENST00000608405 714 ntBASIC13.78□□□□□ -0.2
LINC00477Q96M19 AC008622.2-201ENST00000617006 1229 ntBASIC13.78□□□□□ -0.2
LINC00477Q96M19 AL359736.2-201ENST00000621992 437 ntBASIC13.78□□□□□ -0.2
LINC00477Q96M19 AC097662.2-201ENST00000641359 267 ntAPPRIS P1 BASIC13.78□□□□□ -0.2
LINC00477Q96M19 ZDHHC20-202ENST00000382466 5338 ntAPPRIS P3 TSL 1 (best) BASIC13.78□□□□□ -0.2
LINC00477Q96M19 LRRC32-202ENST00000404995 2656 ntAPPRIS P1 TSL 5 BASIC13.78□□□□□ -0.2
LINC00477Q96M19 FOXP1-214ENST00000493089 2703 ntAPPRIS ALT1 TSL 2 BASIC13.78□□□□□ -0.2
LINC00477Q96M19 SHISA6-202ENST00000409168 7262 ntAPPRIS ALT2 TSL 1 (best) BASIC13.78□□□□□ -0.2
LINC00477Q96M19 DACT2-201ENST00000366795 2942 ntAPPRIS P3 TSL 2 BASIC13.78□□□□□ -0.2
LINC00477Q96M19 GUCY1A2-201ENST00000282249 3047 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
LINC00477Q96M19 PCED1A-201ENST00000356872 1706 ntTSL 2 BASIC13.78□□□□□ -0.2
LINC00477Q96M19 IGF2-205ENST00000416167 5585 ntAPPRIS P2 TSL 1 (best) BASIC13.78□□□□□ -0.2
LINC00477Q96M19 FBXO44-201ENST00000251546 1896 ntTSL 2 BASIC13.78□□□□□ -0.2
LINC00477Q96M19 ALDH3A1-206ENST00000457500 1925 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
LINC00477Q96M19 SHISA3-201ENST00000319234 1971 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
LINC00477Q96M19 CDH23-205ENST00000398809 4533 ntTSL 5 BASIC13.78□□□□□ -0.2
LINC00477Q96M19 SLC44A3-201ENST00000271227 2388 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
LINC00477Q96M19 PCDHB18P-201ENST00000524813 2368 ntBASIC13.78□□□□□ -0.2
LINC00477Q96M19 FAM131A-202ENST00000340957 2421 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
LINC00477Q96M19 ZBTB7C-221ENST00000590800 4947 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
LINC00477Q96M19 PLK3-201ENST00000372201 2492 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
LINC00477Q96M19 ZNRF2-201ENST00000323037 3460 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.2
Retrieved 100 of 98,524 protein–RNA pairs in 44.3 ms