Protein–RNA interactions for Protein: Q96K76

USP47, Ubiquitin carboxyl-terminal hydrolase 47, humanhuman

Predictions only

Length 1,375 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP47Q96K76 SMARCC2-201ENST00000267064 4076 ntAPPRIS P4 TSL 1 (best) BASIC25.67■■□□□ 1.7
USP47Q96K76 CASP16P-202ENST00000575497 2161 ntTSL 2 BASIC25.67■■□□□ 1.7
USP47Q96K76 RNF40-201ENST00000324685 5634 ntAPPRIS P1 TSL 1 (best) BASIC25.67■■□□□ 1.7
USP47Q96K76 FDXR-217ENST00000582944 1766 ntTSL 2 BASIC25.67■■□□□ 1.7
USP47Q96K76 GATM-201ENST00000396659 2597 ntAPPRIS P1 TSL 1 (best) BASIC25.67■■□□□ 1.7
USP47Q96K76 RPL3-201ENST00000216146 1442 ntAPPRIS P1 TSL 1 (best) BASIC25.67■■□□□ 1.7
USP47Q96K76 WNT8A-204ENST00000506684 1543 ntTSL 1 (best) BASIC25.67■■□□□ 1.7
USP47Q96K76 LRRC23-209ENST00000443597 1628 ntAPPRIS P4 TSL 1 (best) BASIC25.67■■□□□ 1.7
USP47Q96K76 SUSD4-203ENST00000344029 1056 ntTSL 1 (best) BASIC25.67■■□□□ 1.7
USP47Q96K76 CDC26-201ENST00000374206 872 ntAPPRIS P1 TSL 1 (best) BASIC25.67■■□□□ 1.7
USP47Q96K76 UBE2C-206ENST00000405520 641 ntTSL 2 BASIC25.67■■□□□ 1.7
USP47Q96K76 RNF216P1-205ENST00000406089 807 ntTSL 5 BASIC25.67■■□□□ 1.7
USP47Q96K76 ISOC2-202ENST00000425675 998 ntAPPRIS P1 TSL 1 (best) BASIC25.67■■□□□ 1.7
USP47Q96K76 DMKN-212ENST00000443640 842 ntAPPRIS ALT2 TSL 5 BASIC25.67■■□□□ 1.7
USP47Q96K76 NT5C2-211ENST00000470299 249 ntTSL 5 BASIC25.67■■□□□ 1.7
USP47Q96K76 SURF4-206ENST00000485435 1206 ntTSL 1 (best) BASIC25.67■■□□□ 1.7
USP47Q96K76 AC027682.5-201ENST00000567122 530 ntTSL 3 BASIC25.67■■□□□ 1.7
USP47Q96K76 NAA38-203ENST00000575071 553 ntTSL 2 BASIC25.67■■□□□ 1.7
USP47Q96K76 UBE2C-208ENST00000617055 705 ntTSL 3 BASIC25.67■■□□□ 1.7
USP47Q96K76 AC027682.6-202ENST00000621378 795 ntTSL 2 BASIC25.67■■□□□ 1.7
USP47Q96K76 TBC1D9B-220ENST00000630103 303 ntTSL 5 BASIC25.67■■□□□ 1.7
USP47Q96K76 ST3GAL3-206ENST00000351035 2377 ntTSL 5 BASIC25.67■■□□□ 1.7
USP47Q96K76 MAFF-207ENST00000538999 2365 ntTSL 2 BASIC25.67■■□□□ 1.7
USP47Q96K76 ADAP2-201ENST00000330889 2934 ntAPPRIS P2 TSL 1 (best) BASIC25.67■■□□□ 1.7
USP47Q96K76 OGG1-203ENST00000302036 2220 ntTSL 1 (best) BASIC25.66■■□□□ 1.7
USP47Q96K76 LONP1-215ENST00000593119 2918 ntTSL 2 BASIC25.66■■□□□ 1.7
USP47Q96K76 RPLP0-219ENST00000551150 1344 ntAPPRIS P1 TSL 1 (best) BASIC25.66■■□□□ 1.7
USP47Q96K76 AGTR1-201ENST00000349243 2356 ntAPPRIS P1 TSL 1 (best) BASIC25.66■■□□□ 1.7
USP47Q96K76 ACSF3-202ENST00000378345 1541 ntTSL 1 (best) BASIC25.66■■□□□ 1.7
USP47Q96K76 ABCG4-206ENST00000622721 2553 ntAPPRIS P1 TSL 1 (best) BASIC25.66■■□□□ 1.7
USP47Q96K76 LRRC20-205ENST00000395010 2959 ntTSL 3 BASIC25.66■■□□□ 1.7
USP47Q96K76 KCNN4-209ENST00000615047 2029 ntTSL 5 BASIC25.66■■□□□ 1.7
USP47Q96K76 NUMBL-207ENST00000598779 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC25.66■■□□□ 1.7
USP47Q96K76 GORASP1-206ENST00000422110 2523 ntTSL 2 BASIC25.66■■□□□ 1.7
USP47Q96K76 VKORC1-205ENST00000394975 1012 ntAPPRIS P1 TSL 1 (best) BASIC25.66■■□□□ 1.7
USP47Q96K76 NMU-205ENST00000511469 756 ntTSL 3 BASIC25.66■■□□□ 1.7
USP47Q96K76 METTL23-204ENST00000586752 904 ntTSL 2 BASIC25.66■■□□□ 1.7
USP47Q96K76 AC011498.5-201ENST00000592027 486 ntBASIC25.66■■□□□ 1.7
USP47Q96K76 AC004263.2-201ENST00000617183 678 ntBASIC25.66■■□□□ 1.7
USP47Q96K76 CALM2-209ENST00000628793 1103 ntTSL 5 BASIC25.66■■□□□ 1.7
USP47Q96K76 CHID1-203ENST00000436108 1477 ntAPPRIS P1 TSL 1 (best) BASIC25.66■■□□□ 1.7
USP47Q96K76 PIP4K2C-202ENST00000422156 1558 ntTSL 2 BASIC25.66■■□□□ 1.7
USP47Q96K76 STXBP2-201ENST00000221283 1876 ntAPPRIS P3 TSL 1 (best) BASIC25.66■■□□□ 1.7
USP47Q96K76 ICA1-206ENST00000402384 2458 ntAPPRIS P3 TSL 2 BASIC25.66■■□□□ 1.7
USP47Q96K76 APLP2-210ENST00000528499 2530 ntTSL 1 (best) BASIC25.65■■□□□ 1.7
USP47Q96K76 ARHGAP11A-208ENST00000567348 2422 ntTSL 1 (best) BASIC25.65■■□□□ 1.7
USP47Q96K76 CPSF3-201ENST00000238112 2345 ntAPPRIS P1 TSL 1 (best) BASIC25.65■■□□□ 1.7
USP47Q96K76 FAM206A-201ENST00000322940 2134 ntAPPRIS P1 TSL 1 (best) BASIC25.65■■□□□ 1.7
USP47Q96K76 ADCK5-201ENST00000308860 1949 ntAPPRIS P1 TSL 1 (best) BASIC25.65■■□□□ 1.7
USP47Q96K76 HMGA1-201ENST00000311487 1920 ntAPPRIS P4 TSL 1 (best) BASIC25.65■■□□□ 1.7
USP47Q96K76 UBE2I-207ENST00000406620 1842 ntAPPRIS P1 TSL 2 BASIC25.65■■□□□ 1.7
USP47Q96K76 PPP4R2-201ENST00000356692 4984 ntAPPRIS P1 TSL 1 (best) BASIC25.65■■□□□ 1.7
USP47Q96K76 AMACR-205ENST00000426255 1316 ntTSL 2 BASIC25.65■■□□□ 1.7
USP47Q96K76 AC135776.1-201ENST00000319817 2481 ntBASIC25.65■■□□□ 1.7
USP47Q96K76 RGS20-203ENST00000344277 1667 ntTSL 1 (best) BASIC25.65■■□□□ 1.7
USP47Q96K76 GUCA1B-201ENST00000230361 1113 ntAPPRIS P1 TSL 1 (best) BASIC25.65■■□□□ 1.7
USP47Q96K76 PDE6B-202ENST00000429163 2120 ntTSL 2 BASIC25.65■■□□□ 1.7
USP47Q96K76 CPEB2-207ENST00000507071 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC25.65■■□□□ 1.7
USP47Q96K76 PPOX-214ENST00000535223 664 ntTSL 3 BASIC25.65■■□□□ 1.7
USP47Q96K76 KRTCAP3-207ENST00000543753 956 ntAPPRIS P1 TSL 5 BASIC25.65■■□□□ 1.7
USP47Q96K76 AC005332.3-201ENST00000589904 676 ntBASIC25.65■■□□□ 1.7
USP47Q96K76 AC005906.2-206ENST00000638180 1029 ntTSL 5 BASIC25.65■■□□□ 1.7
USP47Q96K76 TBC1D3I-202ENST00000618620 1900 ntTSL 1 (best) BASIC25.65■■□□□ 1.7
USP47Q96K76 AC008687.8-201ENST00000599795 1748 ntAPPRIS P1 TSL 2 BASIC25.65■■□□□ 1.7
USP47Q96K76 SLC2A11-204ENST00000398356 2388 ntTSL 1 (best) BASIC25.65■■□□□ 1.7
USP47Q96K76 P3H1-204ENST00000397054 2705 ntAPPRIS ALT2 TSL 1 (best) BASIC25.65■■□□□ 1.7
USP47Q96K76 PTGER3-202ENST00000351052 1404 ntAPPRIS ALT2 TSL 5 BASIC25.64■■□□□ 1.7
USP47Q96K76 COBL-202ENST00000395540 2332 ntTSL 1 (best) BASIC25.64■■□□□ 1.7
USP47Q96K76 MTMR12-201ENST00000264934 2215 ntTSL 2 BASIC25.64■■□□□ 1.7
USP47Q96K76 STAC3-201ENST00000332782 1656 ntAPPRIS P1 TSL 2 BASIC25.64■■□□□ 1.7
USP47Q96K76 SMARCD3-202ENST00000356800 1669 ntTSL 1 (best) BASIC25.64■■□□□ 1.7
USP47Q96K76 TADA3-202ENST00000343450 2554 ntTSL 1 (best) BASIC25.64■■□□□ 1.7
USP47Q96K76 PRODH-205ENST00000420436 2034 ntAPPRIS ALT2 TSL 2 BASIC25.64■■□□□ 1.7
USP47Q96K76 RAVER2-201ENST00000294428 4398 ntAPPRIS ALT2 TSL 5 BASIC25.64■■□□□ 1.7
USP47Q96K76 TNFSF13-208ENST00000483039 959 ntTSL 2 BASIC25.64■■□□□ 1.69
USP47Q96K76 REPIN1-217ENST00000518514 478 ntTSL 3 BASIC25.64■■□□□ 1.69
USP47Q96K76 AC005625.1-201ENST00000590304 472 ntTSL 3 BASIC25.64■■□□□ 1.69
USP47Q96K76 KCNE1B-204ENST00000623803 811 ntAPPRIS P2 TSL 1 (best) BASIC25.64■■□□□ 1.69
USP47Q96K76 AC093010.1-201ENST00000473625 1624 ntBASIC25.64■■□□□ 1.69
USP47Q96K76 MAPT-210ENST00000535772 5718 ntTSL 5 BASIC25.64■■□□□ 1.69
USP47Q96K76 SEPT2-208ENST00000407971 3267 ntTSL 5 BASIC25.64■■□□□ 1.69
USP47Q96K76 P2RY6-207ENST00000538328 1425 ntAPPRIS P1 TSL 3 BASIC25.64■■□□□ 1.69
USP47Q96K76 FAM90A1-201ENST00000307435 2342 ntAPPRIS P1 TSL 2 BASIC25.63■■□□□ 1.69
USP47Q96K76 TRIM13-206ENST00000457662 1489 ntAPPRIS P3 TSL 1 (best) BASIC25.63■■□□□ 1.69
USP47Q96K76 TPGS2-219ENST00000593035 1727 ntAPPRIS ALT2 TSL 2 BASIC25.63■■□□□ 1.69
USP47Q96K76 ARHGEF2-204ENST00000368315 1645 ntTSL 5 BASIC25.63■■□□□ 1.69
USP47Q96K76 RABAC1-201ENST00000222008 821 ntAPPRIS P1 TSL 1 (best) BASIC25.63■■□□□ 1.69
USP47Q96K76 PNOC-201ENST00000301908 1200 ntAPPRIS P1 TSL 1 (best) BASIC25.63■■□□□ 1.69
USP47Q96K76 BAALC-202ENST00000306391 243 ntTSL 5 BASIC25.63■■□□□ 1.69
USP47Q96K76 BAALC-204ENST00000330955 222 ntTSL 5 BASIC25.63■■□□□ 1.69
USP47Q96K76 PAX3-208ENST00000409828 1254 ntTSL 1 (best) BASIC25.63■■□□□ 1.69
USP47Q96K76 AC022424.1-201ENST00000512155 889 ntTSL 3 BASIC25.63■■□□□ 1.69
USP47Q96K76 FAM53C-211ENST00000513056 923 ntTSL 1 (best) BASIC25.63■■□□□ 1.69
USP47Q96K76 TMEM41B-203ENST00000527813 803 ntTSL 5 BASIC25.63■■□□□ 1.69
USP47Q96K76 ISCU-208ENST00000539593 1071 ntTSL 2 BASIC25.63■■□□□ 1.69
USP47Q96K76 AC020558.2-201ENST00000582325 795 ntTSL 3 BASIC25.63■■□□□ 1.69
USP47Q96K76 RABAC1-208ENST00000601078 728 ntTSL 3 BASIC25.63■■□□□ 1.69
USP47Q96K76 AC132938.6-201ENST00000623828 1655 ntBASIC25.63■■□□□ 1.69
USP47Q96K76 SMIM24-201ENST00000215531 1329 ntAPPRIS P2 TSL 1 (best) BASIC25.63■■□□□ 1.69
USP47Q96K76 BAZ1B-202ENST00000404251 5428 ntAPPRIS P1 TSL 2 BASIC25.62■■□□□ 1.69
Retrieved 100 of 98,524 protein–RNA pairs in 28.5 ms