Protein–RNA interactions for Protein: Q96DZ5

CLIP3, CAP-Gly domain-containing linker protein 3, humanhuman

Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3Q96DZ5 REPS2-201ENST00000303843 7771 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
CLIP3Q96DZ5 KCNH1-214ENST00000640566 1365 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
CLIP3Q96DZ5 TMEM171-201ENST00000287773 1247 ntAPPRIS ALT1 TSL 5 BASIC17.72■□□□□ 0.43
CLIP3Q96DZ5 AC115618.1-201ENST00000376775 549 ntTSL 3 BASIC17.72■□□□□ 0.43
CLIP3Q96DZ5 SCO2-202ENST00000395693 992 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CLIP3Q96DZ5 LINC01534-202ENST00000433232 554 ntTSL 3 BASIC17.72■□□□□ 0.43
CLIP3Q96DZ5 KRT18P23-201ENST00000435622 1283 ntBASIC17.72■□□□□ 0.43
CLIP3Q96DZ5 CATIP-AS1-202ENST00000441749 480 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
CLIP3Q96DZ5 AC005091.1-201ENST00000441955 1190 ntTSL 3 BASIC17.72■□□□□ 0.43
CLIP3Q96DZ5 TMEM220-AS1-201ENST00000579114 575 ntTSL 4 BASIC17.72■□□□□ 0.43
CLIP3Q96DZ5 AC016582.2-201ENST00000591908 446 ntTSL 3 BASIC17.72■□□□□ 0.43
CLIP3Q96DZ5 USF2-205ENST00000594064 1179 ntTSL 2 BASIC17.72■□□□□ 0.43
CLIP3Q96DZ5 GFOD2-207ENST00000602855 819 ntTSL 3 BASIC17.72■□□□□ 0.43
CLIP3Q96DZ5 AC116407.4-201ENST00000623319 1061 ntBASIC17.72■□□□□ 0.43
CLIP3Q96DZ5 ANKRD36-207ENST00000639293 1168 ntAPPRIS ALT2 TSL 5 BASIC17.72■□□□□ 0.43
CLIP3Q96DZ5 AP5S1-203ENST00000379573 1848 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
CLIP3Q96DZ5 LINC01586-201ENST00000506090 1840 ntTSL 2 BASIC17.72■□□□□ 0.43
CLIP3Q96DZ5 PLCL2-204ENST00000615277 4147 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
CLIP3Q96DZ5 PRPS1-203ENST00000372428 1748 ntTSL 2 BASIC17.72■□□□□ 0.43
CLIP3Q96DZ5 DENND2A-201ENST00000275884 3735 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CLIP3Q96DZ5 CNIH3-201ENST00000272133 2558 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CLIP3Q96DZ5 ZNF302-201ENST00000423823 2590 ntAPPRIS P3 TSL 1 (best) BASIC17.72■□□□□ 0.43
CLIP3Q96DZ5 GAS7-210ENST00000579158 1528 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
CLIP3Q96DZ5 SDK1-202ENST00000404826 10397 ntAPPRIS P2 TSL 1 (best) BASIC17.72■□□□□ 0.43
CLIP3Q96DZ5 NR2F1-205ENST00000615873 1427 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
CLIP3Q96DZ5 AKIRIN1-201ENST00000372984 1330 ntTSL 2 BASIC17.72■□□□□ 0.43
CLIP3Q96DZ5 HOXD10-201ENST00000249501 1989 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
CLIP3Q96DZ5 NHLH2-201ENST00000320238 2512 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
CLIP3Q96DZ5 CD7-206ENST00000583376 1659 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
CLIP3Q96DZ5 TJP3-201ENST00000539908 2897 ntAPPRIS ALT2 TSL 2 BASIC17.71■□□□□ 0.43
CLIP3Q96DZ5 PTGES2-AS1-201ENST00000443493 2100 ntBASIC17.71■□□□□ 0.43
CLIP3Q96DZ5 TBP-202ENST00000392092 1903 ntAPPRIS P3 TSL 1 (best) BASIC17.71■□□□□ 0.43
CLIP3Q96DZ5 SAMD14-203ENST00000503131 1938 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
CLIP3Q96DZ5 C1QTNF1-209ENST00000581774 1368 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
CLIP3Q96DZ5 PHKA2-201ENST00000379942 5559 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
CLIP3Q96DZ5 GMPPA-203ENST00000358215 1823 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
CLIP3Q96DZ5 GPR32-201ENST00000270590 1269 ntAPPRIS P1 BASIC17.71■□□□□ 0.43
CLIP3Q96DZ5 HBZP1-201ENST00000354915 429 ntBASIC17.71■□□□□ 0.43
CLIP3Q96DZ5 NMRK1-202ENST00000376808 1121 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
CLIP3Q96DZ5 PMEPA1-204ENST00000395814 800 ntTSL 3 BASIC17.71■□□□□ 0.43
CLIP3Q96DZ5 KLHL21-204ENST00000467612 1056 ntTSL 3 BASIC17.71■□□□□ 0.43
CLIP3Q96DZ5 SEC1P-202ENST00000473944 940 ntBASIC17.71■□□□□ 0.43
CLIP3Q96DZ5 AC092597.1-201ENST00000487352 616 ntBASIC17.71■□□□□ 0.43
CLIP3Q96DZ5 HELT-202ENST00000505610 846 ntAPPRIS ALT1 TSL 1 (best) BASIC17.71■□□□□ 0.43
CLIP3Q96DZ5 AC106791.1-202ENST00000508281 1148 ntTSL 2 BASIC17.71■□□□□ 0.43
CLIP3Q96DZ5 PTK2-216ENST00000519881 863 ntTSL 3 BASIC17.71■□□□□ 0.43
CLIP3Q96DZ5 AP003396.3-201ENST00000530918 778 ntTSL 5 BASIC17.71■□□□□ 0.43
CLIP3Q96DZ5 C12orf43-206ENST00000537817 1270 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
CLIP3Q96DZ5 PTGIR-204ENST00000596260 1009 ntTSL 2 BASIC17.71■□□□□ 0.43
CLIP3Q96DZ5 AC069148.1-201ENST00000608741 768 ntBASIC17.71■□□□□ 0.43
CLIP3Q96DZ5 ILKAP-212ENST00000622223 1088 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
CLIP3Q96DZ5 CA7-202ENST00000394069 1713 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
CLIP3Q96DZ5 VAV1-210ENST00000602142 2620 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
CLIP3Q96DZ5 HEXIM2-201ENST00000307275 1528 ntAPPRIS P1 TSL 2 BASIC17.71■□□□□ 0.43
CLIP3Q96DZ5 HACE1-202ENST00000369125 3102 ntTSL 2 BASIC17.71■□□□□ 0.43
CLIP3Q96DZ5 GAMT-202ENST00000447102 1769 ntTSL 2 BASIC17.71■□□□□ 0.43
CLIP3Q96DZ5 ZACN-201ENST00000334586 1335 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.42
CLIP3Q96DZ5 MATN4-201ENST00000353917 1657 ntTSL 5 BASIC17.71■□□□□ 0.42
CLIP3Q96DZ5 DDX42-216ENST00000583590 4148 ntAPPRIS P1 TSL 5 BASIC17.7■□□□□ 0.42
CLIP3Q96DZ5 UBE2Q2-204ENST00000561851 1582 ntTSL 2 BASIC17.7■□□□□ 0.42
CLIP3Q96DZ5 AC018445.3-201ENST00000624177 1945 ntBASIC17.7■□□□□ 0.42
CLIP3Q96DZ5 MRC2-201ENST00000303375 5988 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
CLIP3Q96DZ5 CERCAM-202ENST00000372842 5201 ntAPPRIS ALT2 TSL 5 BASIC17.7■□□□□ 0.42
CLIP3Q96DZ5 SPRED3-201ENST00000338502 4778 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
CLIP3Q96DZ5 HSD17B10-201ENST00000168216 960 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
CLIP3Q96DZ5 FXN-203ENST00000396366 922 ntTSL 2 BASIC17.7■□□□□ 0.42
CLIP3Q96DZ5 AC093901.1-201ENST00000414886 778 ntTSL 5 BASIC17.7■□□□□ 0.42
CLIP3Q96DZ5 CBR1-203ENST00000439427 1024 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
CLIP3Q96DZ5 FXYD7-203ENST00000586063 456 ntAPPRIS ALT2 TSL 3 BASIC17.7■□□□□ 0.42
CLIP3Q96DZ5 ACSF3-202ENST00000378345 1541 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
CLIP3Q96DZ5 KRT81-202ENST00000615839 1505 ntAPPRIS ALT2 TSL 5 BASIC17.7■□□□□ 0.42
CLIP3Q96DZ5 CDH24-205ENST00000554034 2759 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
CLIP3Q96DZ5 MAP3K7CL-206ENST00000399928 1904 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
CLIP3Q96DZ5 ANXA8L1-201ENST00000584982 2174 ntTSL 2 BASIC17.7■□□□□ 0.42
CLIP3Q96DZ5 COBLL1-201ENST00000342193 4898 ntAPPRIS P3 TSL 1 (best) BASIC17.7■□□□□ 0.42
CLIP3Q96DZ5 KAT5-203ENST00000377046 2237 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
CLIP3Q96DZ5 CFAP100-203ENST00000505024 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
CLIP3Q96DZ5 NOP14-AS1-202ENST00000505731 1999 ntTSL 2 BASIC17.7■□□□□ 0.42
CLIP3Q96DZ5 NFE2-204ENST00000553070 1523 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
CLIP3Q96DZ5 GNAS-AS1-202ENST00000443966 2341 ntTSL 5 BASIC17.69■□□□□ 0.42
CLIP3Q96DZ5 CYB561D2-201ENST00000232508 1225 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
CLIP3Q96DZ5 MED30-201ENST00000297347 985 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
CLIP3Q96DZ5 FAM187B-201ENST00000324675 1184 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
CLIP3Q96DZ5 SMYD3-204ENST00000403792 1209 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
CLIP3Q96DZ5 AL603832.1-201ENST00000421943 449 ntTSL 5 BASIC17.69■□□□□ 0.42
CLIP3Q96DZ5 TRIM73-203ENST00000437796 1169 ntAPPRIS P2 TSL 1 (best) BASIC17.69■□□□□ 0.42
CLIP3Q96DZ5 ELP6-205ENST00000439305 880 ntTSL 2 BASIC17.69■□□□□ 0.42
CLIP3Q96DZ5 LINC01293-201ENST00000453951 1266 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
CLIP3Q96DZ5 AC008825.1-201ENST00000504398 452 ntTSL 3 BASIC17.69■□□□□ 0.42
CLIP3Q96DZ5 AC022424.1-201ENST00000512155 889 ntTSL 3 BASIC17.69■□□□□ 0.42
CLIP3Q96DZ5 AC004080.2-201ENST00000523331 556 ntTSL 4 BASIC17.69■□□□□ 0.42
CLIP3Q96DZ5 LINC01785-201ENST00000598042 1112 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
CLIP3Q96DZ5 IFNL4-202ENST00000616270 1132 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
CLIP3Q96DZ5 AC092902.2-222ENST00000626312 568 ntTSL 5 BASIC17.69■□□□□ 0.42
CLIP3Q96DZ5 AL157888.1-201ENST00000631930 593 ntBASIC17.69■□□□□ 0.42
CLIP3Q96DZ5 TWF1-201ENST00000395510 3045 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
CLIP3Q96DZ5 WNT5B-203ENST00000537031 1437 ntAPPRIS P1 TSL 2 BASIC17.69■□□□□ 0.42
CLIP3Q96DZ5 GPR146-201ENST00000397095 1969 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
CLIP3Q96DZ5 RSAD1-201ENST00000258955 2528 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
CLIP3Q96DZ5 RAN-212ENST00000543796 2661 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 37.8 ms