Protein–RNA interactions for Protein: Q969F9

HPS3, Hermansky-Pudlak syndrome 3 protein, humanhuman

Predictions only

Length 1,004 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HPS3Q969F9 OBP2B-205ENST00000618116 961 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
HPS3Q969F9 AC009477.2-201ENST00000635976 171 ntAPPRIS P1 BASIC20.37■□□□□ 0.85
HPS3Q969F9 RAP1GDS1-201ENST00000264572 1686 ntTSL 5 BASIC20.37■□□□□ 0.85
HPS3Q969F9 C19orf48-202ENST00000391812 1666 ntAPPRIS P1 TSL 2 BASIC20.37■□□□□ 0.85
HPS3Q969F9 ENOPH1-202ENST00000505846 1689 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
HPS3Q969F9 PGR-201ENST00000263463 2496 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
HPS3Q969F9 SLC12A5-210ENST00000616202 2445 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
HPS3Q969F9 B3GALNT1-202ENST00000392779 3221 ntAPPRIS P1 TSL 2 BASIC20.37■□□□□ 0.85
HPS3Q969F9 HNF1A-202ENST00000400024 2337 ntTSL 2 BASIC20.37■□□□□ 0.85
HPS3Q969F9 C2CD2L-205ENST00000528586 2320 ntTSL 2 BASIC20.37■□□□□ 0.85
HPS3Q969F9 ENTPD6-209ENST00000433259 2654 ntTSL 5 BASIC20.37■□□□□ 0.85
HPS3Q969F9 BTBD1-202ENST00000379403 1467 ntTSL 5 BASIC20.37■□□□□ 0.85
HPS3Q969F9 SF1-203ENST00000377387 2947 ntAPPRIS ALT2 TSL 1 (best) BASIC20.37■□□□□ 0.85
HPS3Q969F9 DCST1-204ENST00000423025 2199 ntAPPRIS ALT2 TSL 2 BASIC20.36■□□□□ 0.85
HPS3Q969F9 NR4A2-204ENST00000409572 2878 ntAPPRIS P1 TSL 5 BASIC20.36■□□□□ 0.85
HPS3Q969F9 GABRB1-201ENST00000295454 2143 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
HPS3Q969F9 RAB4A-205ENST00000618010 2799 ntTSL 3 BASIC20.36■□□□□ 0.85
HPS3Q969F9 PCED1A-201ENST00000356872 1706 ntTSL 2 BASIC20.36■□□□□ 0.85
HPS3Q969F9 MRPS7-204ENST00000579761 1717 ntTSL 2 BASIC20.36■□□□□ 0.85
HPS3Q969F9 ALDH3B1-206ENST00000615463 1300 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
HPS3Q969F9 FNBP1-201ENST00000355681 1977 ntTSL 2 BASIC20.36■□□□□ 0.85
HPS3Q969F9 LINC01126-201ENST00000623515 1646 ntBASIC20.36■□□□□ 0.85
HPS3Q969F9 FBXL3-201ENST00000355619 3503 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
HPS3Q969F9 BAD-201ENST00000309032 929 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
HPS3Q969F9 NME1-202ENST00000336097 986 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
HPS3Q969F9 ICAM4-202ENST00000380770 1211 ntAPPRIS P3 TSL 1 (best) BASIC20.36■□□□□ 0.85
HPS3Q969F9 NME1-203ENST00000393196 940 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
HPS3Q969F9 TRPT1-202ENST00000394546 1058 ntAPPRIS ALT1 TSL 5 BASIC20.36■□□□□ 0.85
HPS3Q969F9 AC098829.1-201ENST00000502344 630 ntTSL 3 BASIC20.36■□□□□ 0.85
HPS3Q969F9 LINC01024-205ENST00000521563 939 ntTSL 3 BASIC20.36■□□□□ 0.85
HPS3Q969F9 TRPT1-210ENST00000541278 941 ntTSL 2 BASIC20.36■□□□□ 0.85
HPS3Q969F9 TMEM220-AS1-201ENST00000579114 575 ntTSL 4 BASIC20.36■□□□□ 0.85
HPS3Q969F9 AC010240.3-201ENST00000607688 395 ntBASIC20.36■□□□□ 0.85
HPS3Q969F9 ST20-MTHFS-203ENST00000615374 679 ntAPPRIS P1 TSL 3 BASIC20.36■□□□□ 0.85
HPS3Q969F9 AL023973.1-201ENST00000624619 620 ntBASIC20.36■□□□□ 0.85
HPS3Q969F9 AC141257.4-201ENST00000634557 245 ntBASIC20.36■□□□□ 0.85
HPS3Q969F9 AC136944.6-201ENST00000634818 245 ntBASIC20.36■□□□□ 0.85
HPS3Q969F9 SLC35E1-208ENST00000595753 5099 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
HPS3Q969F9 PDLIM7-203ENST00000359895 1567 ntAPPRIS ALT2 TSL 1 (best) BASIC20.36■□□□□ 0.85
HPS3Q969F9 VEGFA-206ENST00000372077 2834 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
HPS3Q969F9 ULK1-201ENST00000321867 5310 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
HPS3Q969F9 POR-209ENST00000439269 1858 ntTSL 2 BASIC20.36■□□□□ 0.85
HPS3Q969F9 ZFP92-201ENST00000338647 6105 ntAPPRIS P1 TSL 5 BASIC20.36■□□□□ 0.85
HPS3Q969F9 AP001922.1-201ENST00000499390 1504 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
HPS3Q969F9 LUC7L-221ENST00000629543 1520 ntTSL 5 BASIC20.36■□□□□ 0.85
HPS3Q969F9 AC009102.3-201ENST00000623118 1491 ntBASIC20.36■□□□□ 0.85
HPS3Q969F9 PHYKPL-201ENST00000308158 2038 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
HPS3Q969F9 MST1R-214ENST00000613534 2025 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
HPS3Q969F9 NIFK-201ENST00000285814 1734 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
HPS3Q969F9 TIMM8A-201ENST00000372902 1664 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
HPS3Q969F9 PMAIP1-202ENST00000316660 1948 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
HPS3Q969F9 EXO5-202ENST00000358527 1892 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
HPS3Q969F9 H1FNT-201ENST00000335017 1300 ntAPPRIS P1 BASIC20.35■□□□□ 0.85
HPS3Q969F9 WFDC1-203ENST00000568638 1319 ntAPPRIS P1 TSL 2 BASIC20.35■□□□□ 0.85
HPS3Q969F9 AL162741.1-201ENST00000565563 1558 ntBASIC20.35■□□□□ 0.85
HPS3Q969F9 C8orf58-207ENST00000615223 1848 ntAPPRIS ALT2 TSL 5 BASIC20.35■□□□□ 0.85
HPS3Q969F9 TNNC1-201ENST00000232975 714 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
HPS3Q969F9 PRDX5-201ENST00000265462 893 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
HPS3Q969F9 GAD2-202ENST00000376248 680 ntTSL 5 BASIC20.35■□□□□ 0.85
HPS3Q969F9 SLC25A48-202ENST00000412661 1148 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
HPS3Q969F9 SLC25A48-204ENST00000433282 1111 ntAPPRIS P1 TSL 5 BASIC20.35■□□□□ 0.85
HPS3Q969F9 AL445472.1-201ENST00000452532 1007 ntTSL 2 BASIC20.35■□□□□ 0.85
HPS3Q969F9 RPL39L-203ENST00000455270 653 ntAPPRIS P1 TSL 2 BASIC20.35■□□□□ 0.85
HPS3Q969F9 SLC39A11-207ENST00000579732 1004 ntTSL 2 BASIC20.35■□□□□ 0.85
HPS3Q969F9 PHGDH-209ENST00000641074 1780 ntBASIC20.35■□□□□ 0.85
HPS3Q969F9 RPN2-201ENST00000237530 2515 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
HPS3Q969F9 PTP4A3-202ENST00000349124 2710 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
HPS3Q969F9 TBC1D10C-201ENST00000312390 1497 ntTSL 5 BASIC20.35■□□□□ 0.85
HPS3Q969F9 MYOZ3-203ENST00000517768 1451 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
HPS3Q969F9 NECTIN1-201ENST00000264025 5840 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
HPS3Q969F9 IL17RC-201ENST00000295981 2621 ntAPPRIS P4 TSL 2 BASIC20.35■□□□□ 0.85
HPS3Q969F9 RALGPS1-208ENST00000424082 2362 ntTSL 2 BASIC20.35■□□□□ 0.85
HPS3Q969F9 KRT8P7-201ENST00000533003 1432 ntBASIC20.35■□□□□ 0.85
HPS3Q969F9 WSCD1-209ENST00000574232 2129 ntAPPRIS P1 TSL 5 BASIC20.35■□□□□ 0.85
HPS3Q969F9 TRABD-201ENST00000303434 2329 ntAPPRIS P3 TSL 1 (best) BASIC20.35■□□□□ 0.85
HPS3Q969F9 RBM7-201ENST00000375490 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC20.34■□□□□ 0.85
HPS3Q969F9 WDSUB1-203ENST00000392796 1812 ntAPPRIS P1 TSL 2 BASIC20.34■□□□□ 0.85
HPS3Q969F9 MAP3K6-207ENST00000493901 4309 ntAPPRIS P1 TSL 5 BASIC20.34■□□□□ 0.85
HPS3Q969F9 YPEL3-202ENST00000398841 1588 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
HPS3Q969F9 MRM2-203ENST00000440306 1570 ntAPPRIS P1 TSL 5 BASIC20.34■□□□□ 0.85
HPS3Q969F9 FCMR-201ENST00000367091 1950 ntAPPRIS P3 TSL 1 (best) BASIC20.34■□□□□ 0.85
HPS3Q969F9 RNFT2-209ENST00000622220 2176 ntTSL 5 BASIC20.34■□□□□ 0.85
HPS3Q969F9 MSI2-203ENST00000416426 1714 ntTSL 2 BASIC20.34■□□□□ 0.85
HPS3Q969F9 SERPINE2-206ENST00000447280 1716 ntTSL 2 BASIC20.34■□□□□ 0.85
HPS3Q969F9 BUD23-201ENST00000265758 1230 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
HPS3Q969F9 CD7-201ENST00000312648 1281 ntAPPRIS P2 TSL 1 (best) BASIC20.34■□□□□ 0.85
HPS3Q969F9 TPD52L1-202ENST00000368388 2147 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
HPS3Q969F9 MIR149-201ENST00000384879 89 ntBASIC20.34■□□□□ 0.85
HPS3Q969F9 ACTN4-202ENST00000390009 2102 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
HPS3Q969F9 HPF1-201ENST00000393381 1230 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
HPS3Q969F9 GPX4-207ENST00000589115 812 ntTSL 2 BASIC20.34■□□□□ 0.85
HPS3Q969F9 CALM3-208ENST00000596362 1203 ntAPPRIS P1 TSL 2 BASIC20.34■□□□□ 0.85
HPS3Q969F9 SCPEP1-216ENST00000631024 444 ntTSL 5 BASIC20.34■□□□□ 0.85
HPS3Q969F9 DNAJB6-218ENST00000634080 1005 ntTSL 2 BASIC20.34■□□□□ 0.85
HPS3Q969F9 RIMKLB-202ENST00000357529 5830 ntAPPRIS P1 TSL 5 BASIC20.34■□□□□ 0.85
HPS3Q969F9 GRIN3B-201ENST00000234389 3281 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
HPS3Q969F9 KLHDC4-227ENST00000622456 1422 ntTSL 5 BASIC20.34■□□□□ 0.85
HPS3Q969F9 MAGED2-213ENST00000627068 1811 ntAPPRIS ALT2 TSL 5 BASIC20.34■□□□□ 0.85
HPS3Q969F9 TSLP-203ENST00000420978 2621 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
HPS3Q969F9 B3GALT5-206ENST00000615480 2617 ntAPPRIS P1 TSL 2 BASIC20.34■□□□□ 0.85
Retrieved 100 of 98,524 protein–RNA pairs in 35.5 ms