Protein–RNA interactions for Protein: Q92889

ERCC4, DNA repair endonuclease XPF, humanhuman

Predicted RBP Predictions only

Length 916 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC4Q92889 PRSS50-202ENST00000315170 1372 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
ERCC4Q92889 SLX1B-SULT1A4-201ENST00000344620 2424 ntTSL 2 BASIC20.86■□□□□ 0.93
ERCC4Q92889 AL355987.1-201ENST00000435202 2420 ntAPPRIS P1 TSL 2 BASIC20.86■□□□□ 0.93
ERCC4Q92889 NIPAL2-201ENST00000341166 4581 ntTSL 2 BASIC20.86■□□□□ 0.93
ERCC4Q92889 TADA2B-204ENST00000512388 1343 ntTSL 5 BASIC20.86■□□□□ 0.93
ERCC4Q92889 GAB1-201ENST00000262994 2648 ntAPPRIS ALT1 TSL 1 (best) BASIC20.86■□□□□ 0.93
ERCC4Q92889 TBXA2R-204ENST00000589966 1814 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
ERCC4Q92889 CTAG2-201ENST00000247306 993 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
ERCC4Q92889 HP1BP3-202ENST00000375000 928 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
ERCC4Q92889 REPIN1-210ENST00000482680 1029 ntTSL 2 BASIC20.86■□□□□ 0.93
ERCC4Q92889 RNF121-214ENST00000533380 870 ntTSL 3 BASIC20.86■□□□□ 0.93
ERCC4Q92889 SYNM-202ENST00000336292 7394 ntAPPRIS P4 TSL 1 (best) BASIC20.86■□□□□ 0.93
ERCC4Q92889 SLC12A9-215ENST00000540482 2269 ntTSL 2 BASIC20.86■□□□□ 0.93
ERCC4Q92889 FST-202ENST00000396947 2538 ntTSL 5 BASIC20.86■□□□□ 0.93
ERCC4Q92889 SHISA3-201ENST00000319234 1971 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
ERCC4Q92889 IGSF9B-206ENST00000533871 5050 ntAPPRIS P2 TSL 5 BASIC20.86■□□□□ 0.93
ERCC4Q92889 GTF2IRD2-207ENST00000625377 1910 ntTSL 5 BASIC20.86■□□□□ 0.93
ERCC4Q92889 BBS5-202ENST00000392663 3107 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
ERCC4Q92889 SIRT1-201ENST00000212015 4094 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
ERCC4Q92889 AC096719.1-201ENST00000510705 1874 ntTSL 5 BASIC20.86■□□□□ 0.93
ERCC4Q92889 MINOS1-NBL1-204ENST00000602662 1623 ntAPPRIS P1 TSL 2 BASIC20.86■□□□□ 0.93
ERCC4Q92889 BAZ1A-203ENST00000382422 5775 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
ERCC4Q92889 KLC2-201ENST00000316924 2990 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
ERCC4Q92889 COL4A3BP-201ENST00000261415 2262 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
ERCC4Q92889 HOTTIP-202ENST00000472494 2285 ntTSL 2 BASIC20.85■□□□□ 0.93
ERCC4Q92889 MFSD10-205ENST00000507555 1573 ntTSL 5 BASIC20.85■□□□□ 0.93
ERCC4Q92889 MYLKP1-201ENST00000509077 1580 ntBASIC20.85■□□□□ 0.93
ERCC4Q92889 IFFO1-201ENST00000336604 2686 ntAPPRIS P3 TSL 1 (best) BASIC20.85■□□□□ 0.93
ERCC4Q92889 OSBPL1A-204ENST00000399443 3317 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
ERCC4Q92889 COBLL1-201ENST00000342193 4898 ntAPPRIS P3 TSL 1 (best) BASIC20.85■□□□□ 0.93
ERCC4Q92889 WNK1-206ENST00000535572 9886 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
ERCC4Q92889 ANKIB1-201ENST00000265742 6081 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
ERCC4Q92889 KDM1A-201ENST00000356634 3033 ntAPPRIS P3 TSL 1 (best) BASIC20.85■□□□□ 0.93
ERCC4Q92889 RHOB-201ENST00000272233 2372 ntAPPRIS P1 BASIC20.85■□□□□ 0.93
ERCC4Q92889 CROCC2-201ENST00000443866 5382 ntAPPRIS P1 TSL 5 BASIC20.85■□□□□ 0.93
ERCC4Q92889 TPD52L1-202ENST00000368388 2147 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
ERCC4Q92889 S100A14-203ENST00000368701 1080 ntAPPRIS P1 TSL 2 BASIC20.85■□□□□ 0.93
ERCC4Q92889 SAPCD2P4-201ENST00000424595 1171 ntBASIC20.85■□□□□ 0.93
ERCC4Q92889 AC003982.1-201ENST00000477404 484 ntTSL 2 BASIC20.85■□□□□ 0.93
ERCC4Q92889 AC091564.5-201ENST00000526456 820 ntTSL 4 BASIC20.85■□□□□ 0.93
ERCC4Q92889 AC091551.1-201ENST00000590722 1228 ntAPPRIS P1 TSL 2 BASIC20.85■□□□□ 0.93
ERCC4Q92889 ZNF667-AS1-208ENST00000594783 475 ntTSL 3 BASIC20.85■□□□□ 0.93
ERCC4Q92889 SPIB-206ENST00000596074 847 ntTSL 2 BASIC20.85■□□□□ 0.93
ERCC4Q92889 AL024498.1-202ENST00000606652 480 ntTSL 2 BASIC20.85■□□□□ 0.93
ERCC4Q92889 AC073195.1-201ENST00000607241 877 ntBASIC20.85■□□□□ 0.93
ERCC4Q92889 BTG3-201ENST00000339775 1485 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
ERCC4Q92889 GFY-201ENST00000576655 1876 ntAPPRIS P1 TSL 5 BASIC20.85■□□□□ 0.93
ERCC4Q92889 POM121C-208ENST00000615331 5835 ntAPPRIS P2 TSL 1 (best) BASIC20.85■□□□□ 0.93
ERCC4Q92889 NOMO2-202ENST00000381474 3911 ntAPPRIS ALT2 TSL 5 BASIC20.85■□□□□ 0.93
ERCC4Q92889 WWP1-202ENST00000517970 4686 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
ERCC4Q92889 FAM118A-202ENST00000405673 1612 ntTSL 5 BASIC20.85■□□□□ 0.93
ERCC4Q92889 UBE3A-201ENST00000232165 5051 ntAPPRIS P3 TSL 5 BASIC20.85■□□□□ 0.93
ERCC4Q92889 KLHL22-201ENST00000328879 2616 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
ERCC4Q92889 HR-201ENST00000312841 5351 ntTSL 5 BASIC20.85■□□□□ 0.93
ERCC4Q92889 STRA6-209ENST00000563965 2565 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
ERCC4Q92889 APH1A-202ENST00000360244 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC20.85■□□□□ 0.93
ERCC4Q92889 PDIA5-201ENST00000316218 1799 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
ERCC4Q92889 ZNF48-205ENST00000613509 3339 ntAPPRIS P1 TSL 2 BASIC20.84■□□□□ 0.93
ERCC4Q92889 BMS1P4-202ENST00000584747 1716 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
ERCC4Q92889 POR-209ENST00000439269 1858 ntTSL 2 BASIC20.84■□□□□ 0.93
ERCC4Q92889 TRIM15-207ENST00000376694 2214 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
ERCC4Q92889 SLC23A3-203ENST00000409878 2010 ntAPPRIS P1 TSL 2 BASIC20.84■□□□□ 0.93
ERCC4Q92889 TMEM198-201ENST00000344458 2393 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
ERCC4Q92889 LCE2B-201ENST00000368780 612 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
ERCC4Q92889 ANKRD54-204ENST00000411961 946 ntTSL 5 BASIC20.84■□□□□ 0.93
ERCC4Q92889 BABAM1-202ENST00000447614 930 ntAPPRIS ALT2 TSL 5 BASIC20.84■□□□□ 0.93
ERCC4Q92889 EFTUD1P1-201ENST00000558187 596 ntTSL 4 BASIC20.84■□□□□ 0.93
ERCC4Q92889 GATA2-202ENST00000430265 2525 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
ERCC4Q92889 WDR25-202ENST00000402312 1969 ntAPPRIS P1 TSL 2 BASIC20.84■□□□□ 0.93
ERCC4Q92889 RNF135-201ENST00000324689 1905 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
ERCC4Q92889 GTF2H4-201ENST00000259895 1735 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
ERCC4Q92889 AC087500.1-202ENST00000571689 1715 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
ERCC4Q92889 AC106820.2-201ENST00000563775 3264 ntBASIC20.84■□□□□ 0.93
ERCC4Q92889 TEX261-201ENST00000272438 3441 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
ERCC4Q92889 MTHFD2L-203ENST00000395759 2354 ntAPPRIS P2 TSL 5 BASIC20.83■□□□□ 0.93
ERCC4Q92889 CXorf40A-208ENST00000434353 1524 ntAPPRIS ALT1 TSL 5 BASIC20.83■□□□□ 0.93
ERCC4Q92889 AC012615.6-201ENST00000593201 1697 ntTSL 2 BASIC20.83■□□□□ 0.93
ERCC4Q92889 ELAC2-202ENST00000395962 2924 ntTSL 2 BASIC20.83■□□□□ 0.93
ERCC4Q92889 RUBCN-206ENST00000449205 1603 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
ERCC4Q92889 DSCR9-201ENST00000454482 1644 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
ERCC4Q92889 STRN4-201ENST00000263280 3210 ntAPPRIS P3 TSL 1 (best) BASIC20.83■□□□□ 0.93
ERCC4Q92889 FARP2-202ENST00000373287 2580 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
ERCC4Q92889 TBC1D3I-202ENST00000618620 1900 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
ERCC4Q92889 SDHA-204ENST00000504309 2067 ntTSL 5 BASIC20.83■□□□□ 0.93
ERCC4Q92889 ACOT8-201ENST00000217455 1168 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
ERCC4Q92889 C1QBP-201ENST00000225698 1169 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
ERCC4Q92889 TSPAN4-209ENST00000409543 1031 ntAPPRIS P1 TSL 5 BASIC20.83■□□□□ 0.93
ERCC4Q92889 AL353807.1-201ENST00000427475 662 ntBASIC20.83■□□□□ 0.93
ERCC4Q92889 LINC00595-207ENST00000476909 792 ntTSL 2 BASIC20.83■□□□□ 0.93
ERCC4Q92889 ADAMTS19-AS1-201ENST00000502827 786 ntTSL 4 BASIC20.83■□□□□ 0.93
ERCC4Q92889 ISG20-210ENST00000560741 800 ntAPPRIS P1 TSL 5 BASIC20.83■□□□□ 0.93
ERCC4Q92889 RARRES2P10-201ENST00000564312 460 ntBASIC20.83■□□□□ 0.93
ERCC4Q92889 DCTPP1-205ENST00000568973 878 ntTSL 2 BASIC20.83■□□□□ 0.93
ERCC4Q92889 AC026271.3-201ENST00000571884 352 ntBASIC20.83■□□□□ 0.93
ERCC4Q92889 SMAD7-207ENST00000589634 1278 ntAPPRIS ALT1 TSL 4 BASIC20.83■□□□□ 0.93
ERCC4Q92889 DDHD1-201ENST00000323669 5503 ntTSL 2 BASIC20.83■□□□□ 0.92
ERCC4Q92889 GATB-213ENST00000515812 1893 ntTSL 5 BASIC20.83■□□□□ 0.92
ERCC4Q92889 OR6D1P-202ENST00000641007 5290 ntBASIC20.83■□□□□ 0.92
ERCC4Q92889 HDAC10-222ENST00000626012 2607 ntTSL 5 BASIC20.83■□□□□ 0.92
ERCC4Q92889 ARHGAP35-201ENST00000404338 8889 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 32.7 ms