Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 GCOM1-202ENST00000380569 1846 ntAPPRIS P3 TSL 2 BASIC18.66■□□□□ 0.58
USP39Q53GS9 CCDC134-201ENST00000255784 1270 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
USP39Q53GS9 PSCA-201ENST00000301258 1020 ntAPPRIS P2 TSL 1 (best) BASIC18.66■□□□□ 0.58
USP39Q53GS9 VKORC1-205ENST00000394975 1012 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
USP39Q53GS9 SPAG16-207ENST00000432529 1250 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
USP39Q53GS9 AC093459.1-201ENST00000444567 481 ntTSL 3 BASIC18.66■□□□□ 0.58
USP39Q53GS9 NOP16-205ENST00000509257 1000 ntTSL 2 BASIC18.66■□□□□ 0.58
USP39Q53GS9 GSTZ1-218ENST00000557053 580 ntTSL 3 BASIC18.66■□□□□ 0.58
USP39Q53GS9 TK1-205ENST00000590862 642 ntTSL 3 BASIC18.66■□□□□ 0.58
USP39Q53GS9 AC034238.1-212ENST00000596137 723 ntTSL 5 BASIC18.66■□□□□ 0.58
USP39Q53GS9 Z69720.1-201ENST00000601483 472 ntBASIC18.66■□□□□ 0.58
USP39Q53GS9 H2BFWT-202ENST00000611083 528 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
USP39Q53GS9 SPINK2-205ENST00000616980 677 ntTSL 5 BASIC18.66■□□□□ 0.58
USP39Q53GS9 CD24-206ENST00000620405 586 ntAPPRIS ALT2 TSL 2 BASIC18.66■□□□□ 0.58
USP39Q53GS9 ATP6V0E2-203ENST00000456496 2722 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
USP39Q53GS9 ATP6V0E2-213ENST00000615196 2727 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
USP39Q53GS9 UBE2K-203ENST00000445950 2175 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
USP39Q53GS9 ORAI2-204ENST00000473939 2493 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
USP39Q53GS9 TAX1BP3-202ENST00000611779 1302 ntTSL 2 BASIC18.66■□□□□ 0.58
USP39Q53GS9 CYP2E1-205ENST00000463117 1912 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
USP39Q53GS9 LYSMD4-202ENST00000344791 2885 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
USP39Q53GS9 PRRT1-202ENST00000375150 1726 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
USP39Q53GS9 ARID3C-201ENST00000378909 1411 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
USP39Q53GS9 TMEM104-202ENST00000417024 1781 ntTSL 2 BASIC18.65■□□□□ 0.58
USP39Q53GS9 PITX2-203ENST00000355080 2100 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
USP39Q53GS9 LUC7L-201ENST00000293872 1456 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
USP39Q53GS9 RCC2P3-201ENST00000418112 1537 ntBASIC18.65■□□□□ 0.58
USP39Q53GS9 ERCC2-205ENST00000485403 1538 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
USP39Q53GS9 NKD2-201ENST00000274150 1940 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
USP39Q53GS9 MB21D1-202ENST00000370318 1917 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
USP39Q53GS9 NDUFA10-203ENST00000404554 1557 ntTSL 5 BASIC18.65■□□□□ 0.58
USP39Q53GS9 AC138430.1-201ENST00000586064 5409 ntTSL 2 BASIC18.65■□□□□ 0.58
USP39Q53GS9 DFFB-203ENST00000341385 572 ntTSL 5 BASIC18.65■□□□□ 0.58
USP39Q53GS9 PHPT1-202ENST00000371661 985 ntTSL 5 BASIC18.65■□□□□ 0.58
USP39Q53GS9 CYCS-202ENST00000409409 974 ntAPPRIS P1 TSL 3 BASIC18.65■□□□□ 0.58
USP39Q53GS9 SEC61G-203ENST00000415949 732 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
USP39Q53GS9 CMPK1-205ENST00000471289 816 ntTSL 2 BASIC18.65■□□□□ 0.58
USP39Q53GS9 FNDC5-205ENST00000496770 837 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
USP39Q53GS9 AC079776.4-201ENST00000511039 504 ntBASIC18.65■□□□□ 0.58
USP39Q53GS9 AP003555.3-201ENST00000534086 432 ntTSL 4 BASIC18.65■□□□□ 0.58
USP39Q53GS9 BMF-207ENST00000559701 630 ntTSL 3 BASIC18.65■□□□□ 0.58
USP39Q53GS9 AC026471.3-201ENST00000565137 578 ntTSL 2 BASIC18.65■□□□□ 0.58
USP39Q53GS9 AC020909.1-201ENST00000599632 1265 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
USP39Q53GS9 PNMA8A-203ENST00000602246 572 ntAPPRIS ALT2 TSL 4 BASIC18.65■□□□□ 0.58
USP39Q53GS9 AC138894.3-201ENST00000603787 634 ntBASIC18.65■□□□□ 0.58
USP39Q53GS9 FDFT1-226ENST00000623368 2368 ntTSL 2 BASIC18.65■□□□□ 0.58
USP39Q53GS9 KRT13-202ENST00000336861 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
USP39Q53GS9 ISYNA1-206ENST00000578963 1691 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
USP39Q53GS9 CYP2F1-201ENST00000331105 1720 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
USP39Q53GS9 SEPT9-211ENST00000585930 1387 ntTSL 2 BASIC18.65■□□□□ 0.58
USP39Q53GS9 CACNA1A-227ENST00000636549 6792 ntAPPRIS ALT2 TSL 5 BASIC18.65■□□□□ 0.58
USP39Q53GS9 AVPR1A-201ENST00000299178 5963 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
USP39Q53GS9 KATNBL1P6-202ENST00000562413 1466 ntBASIC18.65■□□□□ 0.58
USP39Q53GS9 SRRM3-204ENST00000611745 3612 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.58
USP39Q53GS9 NOP14-202ENST00000398071 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
USP39Q53GS9 AL360181.3-201ENST00000468317 1605 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.57
USP39Q53GS9 FXYD6-211ENST00000539526 2132 ntAPPRIS P2 TSL 1 (best) BASIC18.64■□□□□ 0.57
USP39Q53GS9 TBXA2R-201ENST00000375190 2608 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
USP39Q53GS9 MVB12A-201ENST00000317040 2223 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
USP39Q53GS9 KCNH2-202ENST00000330883 3267 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
USP39Q53GS9 MRPL43-203ENST00000318364 1010 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
USP39Q53GS9 TMEM89-201ENST00000330862 662 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
USP39Q53GS9 MRPL43-204ENST00000342071 894 ntTSL 5 BASIC18.64■□□□□ 0.57
USP39Q53GS9 ENSA-205ENST00000361532 792 ntTSL 2 BASIC18.64■□□□□ 0.57
USP39Q53GS9 NFIB-201ENST00000380921 1274 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
USP39Q53GS9 CRELD2-202ENST00000403427 1242 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
USP39Q53GS9 PRSS42-201ENST00000429665 882 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
USP39Q53GS9 AP002469.2-201ENST00000531724 424 ntBASIC18.64■□□□□ 0.57
USP39Q53GS9 CCDC61-201ENST00000536603 1282 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
USP39Q53GS9 ISCU-208ENST00000539593 1071 ntTSL 2 BASIC18.64■□□□□ 0.57
USP39Q53GS9 LIMD2-211ENST00000583211 1298 ntTSL 3 BASIC18.64■□□□□ 0.57
USP39Q53GS9 ISG15-203ENST00000624697 788 ntAPPRIS ALT2 TSL 3 BASIC18.64■□□□□ 0.57
USP39Q53GS9 ASAH1-251ENST00000637561 929 ntTSL 2 BASIC18.64■□□□□ 0.57
USP39Q53GS9 MRM3-201ENST00000304478 1809 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
USP39Q53GS9 GMPPA-203ENST00000358215 1823 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
USP39Q53GS9 AC093503.3-201ENST00000624917 2352 ntBASIC18.64■□□□□ 0.57
USP39Q53GS9 AC016757.1-205ENST00000470346 1888 ntTSL 2 BASIC18.64■□□□□ 0.57
USP39Q53GS9 AL512353.2-201ENST00000448759 1962 ntBASIC18.64■□□□□ 0.57
USP39Q53GS9 AC008556.1-201ENST00000610908 2040 ntBASIC18.64■□□□□ 0.57
USP39Q53GS9 SCARF2-203ENST00000623402 3248 ntAPPRIS P3 TSL 1 (best) BASIC18.64■□□□□ 0.57
USP39Q53GS9 AATK-203ENST00000417379 5081 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
USP39Q53GS9 GGT6-202ENST00000381550 2145 ntTSL 2 BASIC18.64■□□□□ 0.57
USP39Q53GS9 IQSEC1-201ENST00000273221 5279 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
USP39Q53GS9 FSCN2-201ENST00000334850 1551 ntTSL 5 BASIC18.64■□□□□ 0.57
USP39Q53GS9 SHC3-202ENST00000375835 9768 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
USP39Q53GS9 CIDEB-202ENST00000336557 2409 ntAPPRIS P1 TSL 2 BASIC18.63■□□□□ 0.57
USP39Q53GS9 WAC-205ENST00000375664 5924 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
USP39Q53GS9 DNAJC8-201ENST00000263697 1759 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
USP39Q53GS9 LINC01356-201ENST00000401018 1819 ntTSL 2 BASIC18.63■□□□□ 0.57
USP39Q53GS9 PCID2-202ENST00000337344 1898 ntAPPRIS P1 TSL 2 BASIC18.63■□□□□ 0.57
USP39Q53GS9 TRIM7-205ENST00000422067 1954 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
USP39Q53GS9 ZKSCAN7-205ENST00000426540 2791 ntAPPRIS P1 TSL 2 BASIC18.63■□□□□ 0.57
USP39Q53GS9 MBD3-207ENST00000590550 2782 ntTSL 2 BASIC18.63■□□□□ 0.57
USP39Q53GS9 CEP85L-205ENST00000419517 2079 ntAPPRIS P3 TSL 1 (best) BASIC18.63■□□□□ 0.57
USP39Q53GS9 MORC4-201ENST00000255495 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
USP39Q53GS9 HCN4-201ENST00000261917 7228 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
USP39Q53GS9 MARC2-202ENST00000366913 2134 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
USP39Q53GS9 CD1E-203ENST00000368156 861 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
USP39Q53GS9 NT5E-202ENST00000369646 974 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
USP39Q53GS9 LINC01237-203ENST00000430555 843 ntTSL 4 BASIC18.63■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 39.4 ms