Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 SUFU-201ENST00000369899 1839 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
FOXA1P55317 ACSM2B-208ENST00000565322 1834 ntTSL 2 BASIC17.82■□□□□ 0.44
FOXA1P55317 HOXA13-201ENST00000222753 5030 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
FOXA1P55317 ARPIN-202ENST00000460685 2145 ntTSL 2 BASIC17.81■□□□□ 0.44
FOXA1P55317 CLPB-212ENST00000543042 2133 ntTSL 2 BASIC17.81■□□□□ 0.44
FOXA1P55317 DHRS2-201ENST00000250383 1705 ntAPPRIS P3 TSL 1 (best) BASIC17.81■□□□□ 0.44
FOXA1P55317 TMEM128-201ENST00000254742 1737 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
FOXA1P55317 KCNK4-205ENST00000538767 1389 ntTSL 2 BASIC17.81■□□□□ 0.44
FOXA1P55317 SOGA3-203ENST00000525778 4077 ntAPPRIS P1 TSL 5 BASIC17.81■□□□□ 0.44
FOXA1P55317 IFFO1-201ENST00000336604 2686 ntAPPRIS P3 TSL 1 (best) BASIC17.81■□□□□ 0.44
FOXA1P55317 ACTG1-201ENST00000331925 1994 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
FOXA1P55317 ARFGAP2-229ENST00000627920 2613 ntTSL 2 BASIC17.81■□□□□ 0.44
FOXA1P55317 GALNT2-201ENST00000366672 4454 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
FOXA1P55317 TCEA1-208ENST00000521604 2858 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
FOXA1P55317 EMC6-201ENST00000248378 653 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
FOXA1P55317 SMARCC1-201ENST00000254480 6375 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
FOXA1P55317 NDUFS6-201ENST00000274137 1082 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
FOXA1P55317 ICAM4-202ENST00000380770 1211 ntAPPRIS P3 TSL 1 (best) BASIC17.81■□□□□ 0.44
FOXA1P55317 MRPL36-202ENST00000505059 610 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
FOXA1P55317 LINC02167-201ENST00000562769 594 ntTSL 3 BASIC17.81■□□□□ 0.44
FOXA1P55317 RPS6KA5-201ENST00000418736 2249 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
FOXA1P55317 TUBA3C-201ENST00000400113 1551 ntAPPRIS P1 TSL 5 BASIC17.81■□□□□ 0.44
FOXA1P55317 GNAS-203ENST00000306120 1878 ntBASIC17.81■□□□□ 0.44
FOXA1P55317 APP-202ENST00000348990 3355 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
FOXA1P55317 ADCY5-202ENST00000462833 7311 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
FOXA1P55317 LUC7L-221ENST00000629543 1520 ntTSL 5 BASIC17.81■□□□□ 0.44
FOXA1P55317 INPP5A-203ENST00000368594 2967 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
FOXA1P55317 STK4-201ENST00000372801 2038 ntTSL 2 BASIC17.81■□□□□ 0.44
FOXA1P55317 C14orf180-202ENST00000410013 2009 ntAPPRIS P3 TSL 1 (best) BASIC17.81■□□□□ 0.44
FOXA1P55317 DHRS4-201ENST00000313250 1443 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
FOXA1P55317 TEX264-204ENST00000415259 2290 ntAPPRIS P3 TSL 5 BASIC17.81■□□□□ 0.44
FOXA1P55317 VEGFA-206ENST00000372077 2834 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
FOXA1P55317 AL109910.2-201ENST00000607733 1953 ntTSL 2 BASIC17.8■□□□□ 0.44
FOXA1P55317 TMSB4Y-201ENST00000284856 1669 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
FOXA1P55317 GRB7-202ENST00000394204 1667 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
FOXA1P55317 FAM20A-205ENST00000592554 2955 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
FOXA1P55317 C18orf21-205ENST00000592875 1581 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
FOXA1P55317 IRF7-202ENST00000348655 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
FOXA1P55317 FDXR-202ENST00000413947 1809 ntTSL 2 BASIC17.8■□□□□ 0.44
FOXA1P55317 SNCG-201ENST00000348795 684 ntTSL 2 BASIC17.8■□□□□ 0.44
FOXA1P55317 UBB-203ENST00000395839 1012 ntAPPRIS P1 TSL 2 BASIC17.8■□□□□ 0.44
FOXA1P55317 DBNL-214ENST00000456905 1241 ntTSL 2 BASIC17.8■□□□□ 0.44
FOXA1P55317 GLYCTK-205ENST00000473032 935 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
FOXA1P55317 NAT14-202ENST00000587400 416 ntTSL 5 BASIC17.8■□□□□ 0.44
FOXA1P55317 AC008763.3-201ENST00000597959 777 ntAPPRIS P1 TSL 4 BASIC17.8■□□□□ 0.44
FOXA1P55317 Z99916.2-201ENST00000604037 246 ntBASIC17.8■□□□□ 0.44
FOXA1P55317 AC016737.2-201ENST00000609273 358 ntTSL 3 BASIC17.8■□□□□ 0.44
FOXA1P55317 AC026471.5-201ENST00000615068 467 ntBASIC17.8■□□□□ 0.44
FOXA1P55317 DECR2-212ENST00000627716 352 ntTSL 2 BASIC17.8■□□□□ 0.44
FOXA1P55317 FLJ13224-201ENST00000313737 1514 ntBASIC17.8■□□□□ 0.44
FOXA1P55317 PKD2-201ENST00000237596 5056 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
FOXA1P55317 GAB3-203ENST00000424127 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
FOXA1P55317 VPS26A-202ENST00000373382 3229 ntAPPRIS P1 TSL 5 BASIC17.8■□□□□ 0.44
FOXA1P55317 NIFK-201ENST00000285814 1734 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
FOXA1P55317 ETV7-202ENST00000340181 1719 ntAPPRIS P3 TSL 1 (best) BASIC17.8■□□□□ 0.44
FOXA1P55317 MSANTD1-201ENST00000438480 2922 ntAPPRIS P3 TSL 5 BASIC17.8■□□□□ 0.44
FOXA1P55317 GNE-204ENST00000539208 2190 ntTSL 2 BASIC17.8■□□□□ 0.44
FOXA1P55317 TLE3-226ENST00000627388 5742 ntAPPRIS ALT1 TSL 5 BASIC17.8■□□□□ 0.44
FOXA1P55317 APH1A-202ENST00000360244 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC17.8■□□□□ 0.44
FOXA1P55317 SPATA6L-207ENST00000475086 1444 ntAPPRIS P1 TSL 2 BASIC17.8■□□□□ 0.44
FOXA1P55317 SLC35A2-217ENST00000635589 1424 ntTSL 2 BASIC17.8■□□□□ 0.44
FOXA1P55317 MYO9A-214ENST00000566885 5111 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
FOXA1P55317 TMEM183A-201ENST00000367242 3019 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
FOXA1P55317 IVNS1ABP-202ENST00000367498 4199 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
FOXA1P55317 GOLGA2P7-201ENST00000316967 2525 ntTSL 2 BASIC17.79■□□□□ 0.44
FOXA1P55317 FSCN2-201ENST00000334850 1551 ntTSL 5 BASIC17.79■□□□□ 0.44
FOXA1P55317 SDC2-202ENST00000518385 1583 ntTSL 5 BASIC17.79■□□□□ 0.44
FOXA1P55317 VHL-202ENST00000345392 2696 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
FOXA1P55317 ARNT-212ENST00000515192 2892 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
FOXA1P55317 LEMD2-214ENST00000614475 2883 ntAPPRIS P1 TSL 5 BASIC17.79■□□□□ 0.44
FOXA1P55317 T-201ENST00000296946 2436 ntAPPRIS P1 TSL 5 BASIC17.79■□□□□ 0.44
FOXA1P55317 C16orf45-201ENST00000300006 2404 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
FOXA1P55317 PLA2G4C-222ENST00000599921 1984 ntAPPRIS P3 TSL 1 (best) BASIC17.79■□□□□ 0.44
FOXA1P55317 PMEPA1-202ENST00000341744 4845 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
FOXA1P55317 AL163051.1-201ENST00000569214 1512 ntBASIC17.79■□□□□ 0.44
FOXA1P55317 PYGL-201ENST00000216392 3048 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
FOXA1P55317 P2RY6-202ENST00000393590 2398 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
FOXA1P55317 SYT17-207ENST00000568115 1721 ntTSL 5 BASIC17.79■□□□□ 0.44
FOXA1P55317 ADAM15-207ENST00000368413 1901 ntTSL 5 BASIC17.79■□□□□ 0.44
FOXA1P55317 NEURL1B-202ENST00000520919 1089 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
FOXA1P55317 IGHMBP2-205ENST00000539224 785 ntTSL 3 BASIC17.79■□□□□ 0.44
FOXA1P55317 FOXN3-AS1-201ENST00000555562 1077 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
FOXA1P55317 CHRD-202ENST00000348986 3155 ntAPPRIS ALT2 TSL 5 BASIC17.79■□□□□ 0.44
FOXA1P55317 CD164L2-202ENST00000374027 1457 ntAPPRIS P3 TSL 1 (best) BASIC17.79■□□□□ 0.44
FOXA1P55317 NUDT4-202ENST00000415493 4839 ntAPPRIS ALT1 TSL 1 (best) BASIC17.79■□□□□ 0.44
FOXA1P55317 THEG-201ENST00000342640 1877 ntAPPRIS P4 TSL 1 (best) BASIC17.79■□□□□ 0.44
FOXA1P55317 DUS1L-201ENST00000306796 2068 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
FOXA1P55317 EVC-201ENST00000264956 6431 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
FOXA1P55317 SLC30A2-202ENST00000374278 3097 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
FOXA1P55317 CCNC-207ENST00000518714 1426 ntTSL 5 BASIC17.79■□□□□ 0.44
FOXA1P55317 FAM110A-201ENST00000246100 1619 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
FOXA1P55317 SMPD3-201ENST00000219334 5453 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
FOXA1P55317 CFAP46-201ENST00000368585 1825 ntAPPRIS ALT2 TSL 2 BASIC17.79■□□□□ 0.44
FOXA1P55317 MXRA8-202ENST00000342753 2231 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
FOXA1P55317 DKK3-201ENST00000326932 2636 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
FOXA1P55317 WAC-202ENST00000347934 2839 ntTSL 5 BASIC17.79■□□□□ 0.44
FOXA1P55317 MUS81-215ENST00000533035 2180 ntTSL 5 BASIC17.79■□□□□ 0.44
FOXA1P55317 HHATL-201ENST00000310417 1750 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
FOXA1P55317 PPT2-247ENST00000375143 1754 ntAPPRIS ALT2 TSL 5 BASIC17.79■□□□□ 0.44
FOXA1P55317 JAM2-202ENST00000400532 1757 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 47 ms