Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 TMEM64-204ENST00000519519 873 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
PTPN9P43378 UBA52-210ENST00000598780 668 ntAPPRIS P1 TSL 3 BASIC19.1■□□□□ 0.65
PTPN9P43378 EMX2-201ENST00000442245 2710 ntTSL 2 BASIC19.1■□□□□ 0.65
PTPN9P43378 DHRS2-201ENST00000250383 1705 ntAPPRIS P3 TSL 1 (best) BASIC19.1■□□□□ 0.65
PTPN9P43378 MSI2-203ENST00000416426 1714 ntTSL 2 BASIC19.1■□□□□ 0.65
PTPN9P43378 CDCA7L-203ENST00000406877 3066 ntAPPRIS P3 TSL 1 (best) BASIC19.1■□□□□ 0.65
PTPN9P43378 FGFBP3-201ENST00000311575 2545 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
PTPN9P43378 ECE1-203ENST00000374893 2484 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
PTPN9P43378 CHD1L-204ENST00000431239 2907 ntTSL 5 BASIC19.1■□□□□ 0.65
PTPN9P43378 MARK2-203ENST00000377810 4560 ntAPPRIS ALT2 TSL 5 BASIC19.1■□□□□ 0.65
PTPN9P43378 FLYWCH1P1-201ENST00000460917 1874 ntBASIC19.09■□□□□ 0.65
PTPN9P43378 PHGDH-209ENST00000641074 1780 ntBASIC19.09■□□□□ 0.65
PTPN9P43378 UBE2E1-202ENST00000346855 1398 ntTSL 3 BASIC19.09■□□□□ 0.65
PTPN9P43378 GCSH-208ENST00000639169 2537 ntTSL 2 BASIC19.09■□□□□ 0.65
PTPN9P43378 RRN3-205ENST00000563559 2128 ntTSL 5 BASIC19.09■□□□□ 0.65
PTPN9P43378 IL1R1-205ENST00000410023 5143 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
PTPN9P43378 RBM7-201ENST00000375490 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC19.09■□□□□ 0.65
PTPN9P43378 C21orf59-201ENST00000290155 1692 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
PTPN9P43378 TXNRD3-202ENST00000523403 2351 ntAPPRIS ALT2 TSL 2 BASIC19.09■□□□□ 0.65
PTPN9P43378 FGF8-202ENST00000344255 707 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
PTPN9P43378 TSPY5P-201ENST00000426936 936 ntBASIC19.09■□□□□ 0.65
PTPN9P43378 AC012213.1-202ENST00000523422 449 ntTSL 3 BASIC19.09■□□□□ 0.65
PTPN9P43378 CENPX-206ENST00000580435 710 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
PTPN9P43378 C16orf74-207ENST00000602914 761 ntAPPRIS ALT2 TSL 2 BASIC19.09■□□□□ 0.65
PTPN9P43378 NDUFAB1-201ENST00000007516 717 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
PTPN9P43378 SNX11-201ENST00000359238 2315 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
PTPN9P43378 VOPP1-201ENST00000285279 2962 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
PTPN9P43378 LINC00535-201ENST00000501400 1914 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
PTPN9P43378 MED9-201ENST00000268711 2228 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
PTPN9P43378 CCDC63-202ENST00000545036 1887 ntAPPRIS ALT2 TSL 2 BASIC19.09■□□□□ 0.65
PTPN9P43378 AL445433.2-201ENST00000425113 2544 ntTSL 2 BASIC19.09■□□□□ 0.65
PTPN9P43378 AC011416.4-201ENST00000639283 2195 ntTSL 5 BASIC19.09■□□□□ 0.65
PTPN9P43378 AC142086.1-202ENST00000398669 1839 ntTSL 2 BASIC19.09■□□□□ 0.65
PTPN9P43378 WNT8B-201ENST00000343737 2112 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
PTPN9P43378 POLD3-203ENST00000527458 2122 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
PTPN9P43378 KCNN2-208ENST00000631899 2098 ntAPPRIS ALT2 TSL 5 BASIC19.09■□□□□ 0.65
PTPN9P43378 SLC4A4-201ENST00000264485 5852 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
PTPN9P43378 LRRC43-201ENST00000339777 2028 ntAPPRIS P2 TSL 5 BASIC19.08■□□□□ 0.65
PTPN9P43378 CPT2-207ENST00000636867 2643 ntTSL 5 BASIC19.08■□□□□ 0.65
PTPN9P43378 WNT9B-201ENST00000290015 1376 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
PTPN9P43378 ZMYM5-202ENST00000382905 1382 ntTSL 1 (best) BASIC19.08■□□□□ 0.65
PTPN9P43378 RAVER1-207ENST00000615032 1952 ntAPPRIS ALT2 TSL 5 BASIC19.08■□□□□ 0.65
PTPN9P43378 CLASRP-201ENST00000221455 2234 ntAPPRIS P2 TSL 1 (best) BASIC19.08■□□□□ 0.65
PTPN9P43378 RNFT2-202ENST00000319176 2180 ntTSL 5 BASIC19.08■□□□□ 0.65
PTPN9P43378 ZNF419-207ENST00000442920 1857 ntAPPRIS ALT2 TSL 2 BASIC19.08■□□□□ 0.65
PTPN9P43378 BEGAIN-202ENST00000443071 2744 ntTSL 1 (best) BASIC19.08■□□□□ 0.65
PTPN9P43378 SRP9-203ENST00000366839 1596 ntTSL 1 (best) BASIC19.08■□□□□ 0.65
PTPN9P43378 KLK14-201ENST00000156499 1060 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
PTPN9P43378 PIEZO1-202ENST00000327397 1246 ntTSL 2 BASIC19.08■□□□□ 0.64
PTPN9P43378 ZMYM5-203ENST00000382907 1092 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
PTPN9P43378 AK4P3-201ENST00000418260 669 ntBASIC19.08■□□□□ 0.64
PTPN9P43378 SPDYE15P-201ENST00000424157 909 ntBASIC19.08■□□□□ 0.64
PTPN9P43378 AC104076.2-201ENST00000448912 469 ntBASIC19.08■□□□□ 0.64
PTPN9P43378 TMEM9B-AS1-201ENST00000525484 1053 ntTSL 5 BASIC19.08■□□□□ 0.64
PTPN9P43378 ULK4P3-205ENST00000568486 1158 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
PTPN9P43378 RN7SL850P-201ENST00000579959 291 ntBASIC19.08■□□□□ 0.64
PTPN9P43378 CADM1-222ENST00000616271 1246 ntTSL 5 BASIC19.08■□□□□ 0.64
PTPN9P43378 TLK2-202ENST00000343388 3227 ntAPPRIS ALT1 TSL 1 (best) BASIC19.08■□□□□ 0.64
PTPN9P43378 RRP7BP-201ENST00000357802 2375 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
PTPN9P43378 RNPEPL1-201ENST00000270357 5658 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
PTPN9P43378 EIPR1-201ENST00000382125 1766 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
PTPN9P43378 EMC8-201ENST00000253457 1962 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
PTPN9P43378 TIMM8A-201ENST00000372902 1664 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
PTPN9P43378 C19orf48-202ENST00000391812 1666 ntAPPRIS P1 TSL 2 BASIC19.08■□□□□ 0.64
PTPN9P43378 NOP9-202ENST00000396802 1942 ntTSL 5 BASIC19.08■□□□□ 0.64
PTPN9P43378 APOA5-201ENST00000227665 1897 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
PTPN9P43378 EGFL6-201ENST00000361306 2398 ntAPPRIS P3 TSL 1 (best) BASIC19.07■□□□□ 0.64
PTPN9P43378 C1orf198-201ENST00000366663 3858 ntAPPRIS P3 TSL 1 (best) BASIC19.07■□□□□ 0.64
PTPN9P43378 APBB1-215ENST00000608394 2128 ntTSL 5 BASIC19.07■□□□□ 0.64
PTPN9P43378 APBB1-222ENST00000610474 2147 ntTSL 5 BASIC19.07■□□□□ 0.64
PTPN9P43378 CIZ1-226ENST00000629610 2855 ntAPPRIS ALT2 TSL 2 BASIC19.07■□□□□ 0.64
PTPN9P43378 PTPRE-201ENST00000254667 5331 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
PTPN9P43378 MYBPH-201ENST00000255416 1805 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
PTPN9P43378 TSPY8-203ENST00000383005 435 ntTSL 5 BASIC19.07■□□□□ 0.64
PTPN9P43378 IMP3-202ENST00000403490 1237 ntAPPRIS P1 BASIC19.07■□□□□ 0.64
PTPN9P43378 AC007731.5-201ENST00000429594 644 ntAPPRIS P1 TSL 5 BASIC19.07■□□□□ 0.64
PTPN9P43378 HOMER2P1-201ENST00000455653 964 ntBASIC19.07■□□□□ 0.64
PTPN9P43378 WDR45-218ENST00000473974 1077 ntTSL 5 BASIC19.07■□□□□ 0.64
PTPN9P43378 GSTZ1-218ENST00000557053 580 ntTSL 3 BASIC19.07■□□□□ 0.64
PTPN9P43378 C16orf74-203ENST00000602675 744 ntAPPRIS ALT2 TSL 1 (best) BASIC19.07■□□□□ 0.64
PTPN9P43378 PRPF39-201ENST00000355765 2868 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
PTPN9P43378 TPD52L1-202ENST00000368388 2147 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
PTPN9P43378 IRGC-201ENST00000244314 1662 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
PTPN9P43378 ZBED3-AS1-208ENST00000512001 1668 ntTSL 3 BASIC19.07■□□□□ 0.64
PTPN9P43378 C2CD2L-205ENST00000528586 2320 ntTSL 2 BASIC19.07■□□□□ 0.64
PTPN9P43378 FBXO44-201ENST00000251546 1896 ntTSL 2 BASIC19.07■□□□□ 0.64
PTPN9P43378 THAP3-203ENST00000377627 2053 ntAPPRIS P3 TSL 2 BASIC19.07■□□□□ 0.64
PTPN9P43378 RBM24-202ENST00000379052 2703 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
PTPN9P43378 FAM219B-204ENST00000563119 2721 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
PTPN9P43378 CBS-203ENST00000398158 2453 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
PTPN9P43378 GDF10-201ENST00000580279 2458 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
PTPN9P43378 SYT3-206ENST00000600079 2463 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
PTPN9P43378 CBSL-206ENST00000624406 2453 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
PTPN9P43378 MBD1-208ENST00000398493 1845 ntTSL 5 BASIC19.07■□□□□ 0.64
PTPN9P43378 A4GALT-201ENST00000249005 2020 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
PTPN9P43378 CNIH3-201ENST00000272133 2558 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
PTPN9P43378 PRSS12-201ENST00000296498 4809 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
PTPN9P43378 TPGS2-219ENST00000593035 1727 ntAPPRIS ALT2 TSL 2 BASIC19.06■□□□□ 0.64
PTPN9P43378 SOST-201ENST00000301691 2300 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
PTPN9P43378 SORCS3-201ENST00000369699 5530 ntAPPRIS P1 TSL 5 BASIC19.06■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 52.7 ms