Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 LCE4A-202ENST00000368777 672 ntAPPRIS P1 TSL 2 BASIC18.01■□□□□ 0.47
SHMT2P34897 YPEL3-201ENST00000398838 935 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
SHMT2P34897 PLCB1-204ENST00000404098 1260 ntTSL 3 BASIC18.01■□□□□ 0.47
SHMT2P34897 FAM8A6P-201ENST00000407496 1135 ntBASIC18.01■□□□□ 0.47
SHMT2P34897 AC004080.5-201ENST00000498652 368 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
SHMT2P34897 CD81-212ENST00000526072 1172 ntTSL 5 BASIC18.01■□□□□ 0.47
SHMT2P34897 DRAP1-205ENST00000527119 581 ntTSL 5 BASIC18.01■□□□□ 0.47
SHMT2P34897 REEP1-207ENST00000535845 1196 ntTSL 2 BASIC18.01■□□□□ 0.47
SHMT2P34897 ZNF534-205ENST00000617900 1085 ntTSL 2 BASIC18.01■□□□□ 0.47
SHMT2P34897 GOLGA2P10-205ENST00000618267 983 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
SHMT2P34897 HNF1A-202ENST00000400024 2337 ntTSL 2 BASIC18.01■□□□□ 0.47
SHMT2P34897 AD000671.2-201ENST00000589807 1925 ntAPPRIS P1 TSL 2 BASIC18.01■□□□□ 0.47
SHMT2P34897 HEXIM2-201ENST00000307275 1528 ntAPPRIS P1 TSL 2 BASIC18.01■□□□□ 0.47
SHMT2P34897 NFATC2IP-201ENST00000320805 4569 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
SHMT2P34897 PNKP-224ENST00000631020 1545 ntTSL 5 BASIC18.01■□□□□ 0.47
SHMT2P34897 DEF8-211ENST00000563795 1767 ntTSL 5 BASIC18.01■□□□□ 0.47
SHMT2P34897 RABL2B-205ENST00000395595 2428 ntAPPRIS ALT2 TSL 1 (best) BASIC18.01■□□□□ 0.47
SHMT2P34897 CALM3-201ENST00000291295 2289 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
SHMT2P34897 PTN-201ENST00000348225 1614 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
SHMT2P34897 SPOPL-201ENST00000280098 6025 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
SHMT2P34897 CCDC120-204ENST00000597275 2752 ntAPPRIS P3 TSL 2 BASIC18.01■□□□□ 0.47
SHMT2P34897 GOLGA3-203ENST00000456883 5496 ntAPPRIS ALT2 TSL 1 (best) BASIC18.01■□□□□ 0.47
SHMT2P34897 MAPT-209ENST00000446361 5345 ntAPPRIS ALT2 TSL 1 (best) BASIC18.01■□□□□ 0.47
SHMT2P34897 BTG3-201ENST00000339775 1485 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
SHMT2P34897 EEF1AKMT2-201ENST00000368836 1462 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
SHMT2P34897 FSTL1-201ENST00000295633 5943 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
SHMT2P34897 MAFK-201ENST00000343242 3368 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
SHMT2P34897 PRDM12-201ENST00000253008 2476 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
SHMT2P34897 LY6E-203ENST00000517503 1335 ntAPPRIS ALT2 TSL 3 BASIC18■□□□□ 0.47
SHMT2P34897 OSR2-201ENST00000297565 1838 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
SHMT2P34897 MAGED2-213ENST00000627068 1811 ntAPPRIS ALT2 TSL 5 BASIC18■□□□□ 0.47
SHMT2P34897 DDX42-202ENST00000389924 3939 ntAPPRIS P1 TSL 5 BASIC18■□□□□ 0.47
SHMT2P34897 PRMT2-203ENST00000355680 2688 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
SHMT2P34897 CTBP2-214ENST00000531469 1918 ntAPPRIS P1 TSL 2 BASIC18■□□□□ 0.47
SHMT2P34897 TYMS-203ENST00000323274 1662 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
SHMT2P34897 FAM182B-201ENST00000376403 1681 ntAPPRIS P5 TSL 1 (best) BASIC18■□□□□ 0.47
SHMT2P34897 ZNF787-202ENST00000587279 1657 ntTSL 2 BASIC18■□□□□ 0.47
SHMT2P34897 AC012615.6-201ENST00000593201 1697 ntTSL 2 BASIC18■□□□□ 0.47
SHMT2P34897 KLHDC4-227ENST00000622456 1422 ntTSL 5 BASIC18■□□□□ 0.47
SHMT2P34897 RAB1A-204ENST00000409892 2254 ntTSL 2 BASIC18■□□□□ 0.47
SHMT2P34897 SAMD5-201ENST00000367474 6089 ntAPPRIS P1 TSL 2 BASIC18■□□□□ 0.47
SHMT2P34897 L3HYPDH-201ENST00000247194 1527 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
SHMT2P34897 CD1E-211ENST00000368166 1271 ntTSL 1 (best) BASIC18■□□□□ 0.47
SHMT2P34897 LCE3D-201ENST00000368787 613 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
SHMT2P34897 LCN8-201ENST00000371688 867 ntAPPRIS P2 TSL 1 (best) BASIC18■□□□□ 0.47
SHMT2P34897 RASGRP2-205ENST00000377489 583 ntTSL 3 BASIC18■□□□□ 0.47
SHMT2P34897 AP000593.1-201ENST00000393668 712 ntBASIC18■□□□□ 0.47
SHMT2P34897 SELENOF-203ENST00000401030 727 ntTSL 2 BASIC18■□□□□ 0.47
SHMT2P34897 AC004540.1-203ENST00000421862 907 ntTSL 5 BASIC18■□□□□ 0.47
SHMT2P34897 DMKN-208ENST00000424570 1293 ntAPPRIS ALT2 TSL 1 (best) BASIC18■□□□□ 0.47
SHMT2P34897 ST6GALNAC4P1-201ENST00000435385 499 ntBASIC18■□□□□ 0.47
SHMT2P34897 ELOVL2-AS1-202ENST00000456616 903 ntTSL 1 (best) BASIC18■□□□□ 0.47
SHMT2P34897 SEC1P-202ENST00000473944 940 ntBASIC18■□□□□ 0.47
SHMT2P34897 CNTD2-203ENST00000513948 787 ntAPPRIS ALT2 TSL 2 BASIC18■□□□□ 0.47
SHMT2P34897 PLEKHA2-206ENST00000521746 2127 ntTSL 5 BASIC18■□□□□ 0.47
SHMT2P34897 C12orf43-206ENST00000537817 1270 ntAPPRIS ALT2 TSL 1 (best) BASIC18■□□□□ 0.47
SHMT2P34897 IFI27L2-206ENST00000556727 556 ntTSL 3 BASIC18■□□□□ 0.47
SHMT2P34897 RRN3-205ENST00000563559 2128 ntTSL 5 BASIC18■□□□□ 0.47
SHMT2P34897 DCTN5-208ENST00000568589 772 ntTSL 2 BASIC18■□□□□ 0.47
SHMT2P34897 EBLN3P-205ENST00000629870 958 ntTSL 3 BASIC18■□□□□ 0.47
SHMT2P34897 CCDC91-220ENST00000545336 2738 ntAPPRIS P1 TSL 5 BASIC18■□□□□ 0.47
SHMT2P34897 ASIC3-202ENST00000349064 1895 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
SHMT2P34897 RIOX2-201ENST00000333396 5347 ntAPPRIS ALT1 TSL 1 (best) BASIC18■□□□□ 0.47
SHMT2P34897 MSANTD1-201ENST00000438480 2922 ntAPPRIS P3 TSL 5 BASIC18■□□□□ 0.47
SHMT2P34897 CD19-206ENST00000567541 1707 ntAPPRIS ALT2 TSL 1 (best) BASIC18■□□□□ 0.47
SHMT2P34897 PTK6-201ENST00000217185 2401 ntTSL 2 BASIC18■□□□□ 0.47
SHMT2P34897 ARSA-203ENST00000395619 1824 ntAPPRIS P1 TSL 5 BASIC18■□□□□ 0.47
SHMT2P34897 PLEKHB1-203ENST00000398492 2275 ntAPPRIS ALT1 TSL 1 (best) BASIC18■□□□□ 0.47
SHMT2P34897 MAN1B1-207ENST00000535144 2296 ntTSL 2 BASIC18■□□□□ 0.47
SHMT2P34897 DIO3OS-212ENST00000557661 1937 ntTSL 1 (best) BASIC18■□□□□ 0.47
SHMT2P34897 PMEPA1-202ENST00000341744 4845 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
SHMT2P34897 DNM1-211ENST00000627061 2724 ntTSL 5 BASIC18■□□□□ 0.47
SHMT2P34897 PRR5-201ENST00000006251 1767 ntTSL 2 BASIC17.99■□□□□ 0.47
SHMT2P34897 AC020763.4-201ENST00000623414 4170 ntBASIC17.99■□□□□ 0.47
SHMT2P34897 RAB29-205ENST00000446390 1441 ntTSL 2 BASIC17.99■□□□□ 0.47
SHMT2P34897 ZNRF2-201ENST00000323037 3460 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
SHMT2P34897 PDE9A-206ENST00000380328 1875 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
SHMT2P34897 EFEMP2-210ENST00000528176 1504 ntTSL 5 BASIC17.99■□□□□ 0.47
SHMT2P34897 NUP50-AS1-201ENST00000426282 2076 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
SHMT2P34897 TULP1-208ENST00000614066 2084 ntAPPRIS ALT2 TSL 5 BASIC17.99■□□□□ 0.47
SHMT2P34897 LLGL2-203ENST00000392550 3509 ntAPPRIS P2 TSL 1 (best) BASIC17.99■□□□□ 0.47
SHMT2P34897 NTRK1-203ENST00000392302 2609 ntTSL 5 BASIC17.99■□□□□ 0.47
SHMT2P34897 FAM219B-204ENST00000563119 2721 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
SHMT2P34897 PEX11G-201ENST00000221480 1062 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
SHMT2P34897 RHEBL1-201ENST00000301068 1210 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
SHMT2P34897 DNAJC4-201ENST00000321460 1015 ntAPPRIS ALT2 TSL 1 (best) BASIC17.99■□□□□ 0.47
SHMT2P34897 AL035541.1-201ENST00000424850 823 ntTSL 2 BASIC17.99■□□□□ 0.47
SHMT2P34897 TMA7-201ENST00000438607 561 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
SHMT2P34897 FIS1-207ENST00000474120 915 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
SHMT2P34897 CCNG1-211ENST00000512163 919 ntTSL 2 BASIC17.99■□□□□ 0.47
SHMT2P34897 KRT18P41-201ENST00000518924 1277 ntBASIC17.99■□□□□ 0.47
SHMT2P34897 AC104390.1-201ENST00000555663 520 ntBASIC17.99■□□□□ 0.47
SHMT2P34897 AC004076.1-201ENST00000596831 664 ntAPPRIS P1 TSL 2 BASIC17.99■□□□□ 0.47
SHMT2P34897 MYC-208ENST00000641036 567 ntBASIC17.99■□□□□ 0.47
SHMT2P34897 RNF135-201ENST00000324689 1905 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
SHMT2P34897 COBL-210ENST00000632460 1941 ntTSL 5 BASIC17.99■□□□□ 0.47
SHMT2P34897 ENOPH1-201ENST00000273920 2025 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
SHMT2P34897 CADPS2-201ENST00000313070 6065 ntTSL 5 BASIC17.99■□□□□ 0.47
SHMT2P34897 PIF1-205ENST00000559239 2677 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
SHMT2P34897 NOC2LP1-202ENST00000452600 2235 ntBASIC17.99■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 23.3 ms