Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 EEF1AKMT2-201ENST00000368836 1462 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
HLA-DMBP28068 SNAPC3-207ENST00000610884 2453 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
HLA-DMBP28068 CCK-202ENST00000396169 1527 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
HLA-DMBP28068 ANXA3-201ENST00000264908 1657 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
HLA-DMBP28068 ISY1-201ENST00000273541 1704 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
HLA-DMBP28068 AC063977.6-201ENST00000600074 1763 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
HLA-DMBP28068 PCSK5-201ENST00000376752 5756 ntAPPRIS P3 TSL 1 (best) BASIC14.03□□□□□ -0.16
HLA-DMBP28068 A4GALT-201ENST00000249005 2020 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
HLA-DMBP28068 SLC39A5-201ENST00000266980 2031 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
HLA-DMBP28068 PRODH-205ENST00000420436 2034 ntAPPRIS ALT2 TSL 2 BASIC14.03□□□□□ -0.16
HLA-DMBP28068 MST1R-214ENST00000613534 2025 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
HLA-DMBP28068 PLBD2-201ENST00000280800 4800 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
HLA-DMBP28068 ADRA1A-205ENST00000380582 2089 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
HLA-DMBP28068 ELP5-214ENST00000574993 2209 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
HLA-DMBP28068 MZT1-201ENST00000377818 2299 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
HLA-DMBP28068 KLHL33-202ENST00000636854 2394 ntAPPRIS P1 TSL 5 BASIC14.03□□□□□ -0.16
HLA-DMBP28068 GSDMD-206ENST00000526406 2496 ntAPPRIS P2 TSL 2 BASIC14.03□□□□□ -0.16
HLA-DMBP28068 TMEM110-201ENST00000355083 4769 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
HLA-DMBP28068 TAP1-201ENST00000354258 2959 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
HLA-DMBP28068 DVL2-201ENST00000005340 3018 ntAPPRIS P2 TSL 1 (best) BASIC14.03□□□□□ -0.16
HLA-DMBP28068 FAM234A-203ENST00000399932 3213 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
HLA-DMBP28068 MSGN1-201ENST00000281047 606 ntAPPRIS P1 BASIC14.03□□□□□ -0.16
HLA-DMBP28068 KIAA1522-201ENST00000294521 878 ntAPPRIS ALT2 TSL 2 BASIC14.03□□□□□ -0.16
HLA-DMBP28068 ACVR1C-203ENST00000348328 1270 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
HLA-DMBP28068 TSTD1-202ENST00000368023 574 ntAPPRIS ALT2 TSL 2 BASIC14.03□□□□□ -0.16
HLA-DMBP28068 FAM26F-202ENST00000368605 1117 ntAPPRIS P1 TSL 5 BASIC14.03□□□□□ -0.16
HLA-DMBP28068 LCE2B-201ENST00000368780 612 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
HLA-DMBP28068 PMEPA1-204ENST00000395814 800 ntTSL 3 BASIC14.03□□□□□ -0.16
HLA-DMBP28068 SAPCD2P4-201ENST00000424595 1171 ntBASIC14.03□□□□□ -0.16
HLA-DMBP28068 CCK-203ENST00000434608 747 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
HLA-DMBP28068 GXYLT1P3-201ENST00000453058 1193 ntBASIC14.03□□□□□ -0.16
HLA-DMBP28068 LINC00595-207ENST00000476909 792 ntTSL 2 BASIC14.03□□□□□ -0.16
HLA-DMBP28068 MNX1-AS1-201ENST00000480284 1041 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
HLA-DMBP28068 FAM86C2P-201ENST00000525180 435 ntTSL 4 BASIC14.03□□□□□ -0.16
HLA-DMBP28068 AC005943.1-201ENST00000585937 1002 ntAPPRIS P1 TSL 3 BASIC14.03□□□□□ -0.16
HLA-DMBP28068 TNNT1-208ENST00000587465 1065 ntAPPRIS ALT2 TSL 5 BASIC14.03□□□□□ -0.16
HLA-DMBP28068 AC073912.3-201ENST00000624414 853 ntBASIC14.03□□□□□ -0.16
HLA-DMBP28068 MYC-208ENST00000641036 567 ntBASIC14.03□□□□□ -0.16
HLA-DMBP28068 TWIST2-202ENST00000612363 1404 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
HLA-DMBP28068 PIP4K2C-202ENST00000422156 1558 ntTSL 2 BASIC14.03□□□□□ -0.16
HLA-DMBP28068 MFSD10-205ENST00000507555 1573 ntTSL 5 BASIC14.03□□□□□ -0.16
HLA-DMBP28068 VPS26B-202ENST00000525095 1558 ntAPPRIS P1 TSL 5 BASIC14.03□□□□□ -0.16
HLA-DMBP28068 FAM118A-202ENST00000405673 1612 ntTSL 5 BASIC14.03□□□□□ -0.16
HLA-DMBP28068 MRPL3-201ENST00000264995 1706 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
HLA-DMBP28068 AC096719.1-201ENST00000510705 1874 ntTSL 5 BASIC14.03□□□□□ -0.16
HLA-DMBP28068 KLHL31-201ENST00000370905 5743 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
HLA-DMBP28068 ARSA-201ENST00000216124 2050 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
HLA-DMBP28068 PNMA6E-201ENST00000445091 2192 ntAPPRIS P1 TSL 2 BASIC14.03□□□□□ -0.16
HLA-DMBP28068 PDZD3-202ENST00000355547 2252 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
HLA-DMBP28068 QPRT-202ENST00000395384 2343 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
HLA-DMBP28068 LINC00574-201ENST00000420557 2318 ntTSL 2 BASIC14.03□□□□□ -0.16
HLA-DMBP28068 FAM131A-202ENST00000340957 2421 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
HLA-DMBP28068 POLI-207ENST00000579434 2705 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
HLA-DMBP28068 ANKRD6-204ENST00000447838 2968 ntAPPRIS P3 TSL 1 (best) BASIC14.03□□□□□ -0.16
HLA-DMBP28068 PPM1H-201ENST00000228705 6353 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
HLA-DMBP28068 ENC1-201ENST00000302351 5520 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
HLA-DMBP28068 KCNA7-201ENST00000221444 4372 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
HLA-DMBP28068 PARVG-206ENST00000444313 3523 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
HLA-DMBP28068 PKP3-201ENST00000331563 2809 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
HLA-DMBP28068 SCARB1-203ENST00000415380 2731 ntTSL 2 BASIC14.02□□□□□ -0.16
HLA-DMBP28068 EHMT1-204ENST00000462484 2707 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
HLA-DMBP28068 TTLL8-201ENST00000266182 2505 ntAPPRIS ALT2 TSL 5 BASIC14.02□□□□□ -0.16
HLA-DMBP28068 C19orf54-203ENST00000470681 2521 ntTSL 2 BASIC14.02□□□□□ -0.16
HLA-DMBP28068 NR2C2-206ENST00000425241 2494 ntAPPRIS P1 TSL 2 BASIC14.02□□□□□ -0.16
HLA-DMBP28068 SAMD3-202ENST00000368134 2377 ntAPPRIS P1 TSL 2 BASIC14.02□□□□□ -0.16
HLA-DMBP28068 AC008764.6-201ENST00000595909 2069 ntBASIC14.02□□□□□ -0.16
HLA-DMBP28068 LRRC27-201ENST00000344079 1809 ntAPPRIS ALT2 TSL 2 BASIC14.02□□□□□ -0.16
HLA-DMBP28068 MYLKP1-201ENST00000509077 1580 ntBASIC14.02□□□□□ -0.16
HLA-DMBP28068 BTG3-201ENST00000339775 1485 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
HLA-DMBP28068 ENSA-205ENST00000361532 792 ntTSL 2 BASIC14.02□□□□□ -0.17
HLA-DMBP28068 HOXD12-201ENST00000404162 841 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
HLA-DMBP28068 AL355355.2-201ENST00000442321 338 ntBASIC14.02□□□□□ -0.17
HLA-DMBP28068 SMIM1-201ENST00000444870 546 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
HLA-DMBP28068 STAC3-202ENST00000546246 1014 ntTSL 2 BASIC14.02□□□□□ -0.17
HLA-DMBP28068 EFTUD1P1-201ENST00000558187 596 ntTSL 4 BASIC14.02□□□□□ -0.17
HLA-DMBP28068 NUBP2-206ENST00000565134 815 ntTSL 5 BASIC14.02□□□□□ -0.17
HLA-DMBP28068 ZNF667-AS1-208ENST00000594783 475 ntTSL 3 BASIC14.02□□□□□ -0.17
HLA-DMBP28068 CD177P1-201ENST00000606252 935 ntBASIC14.02□□□□□ -0.17
HLA-DMBP28068 NTAN1-211ENST00000622833 1049 ntTSL 2 BASIC14.02□□□□□ -0.17
HLA-DMBP28068 NTAN1-212ENST00000624579 1115 ntTSL 2 BASIC14.02□□□□□ -0.17
HLA-DMBP28068 ZYG11A-203ENST00000612017 3682 ntTSL 5 BASIC14.02□□□□□ -0.17
HLA-DMBP28068 PROSER2-201ENST00000277570 3333 ntAPPRIS P2 TSL 1 (best) BASIC14.02□□□□□ -0.17
HLA-DMBP28068 TUBGCP3-202ENST00000375669 2723 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
HLA-DMBP28068 PODN-203ENST00000395871 2744 ntTSL 5 BASIC14.02□□□□□ -0.17
HLA-DMBP28068 NTRK1-203ENST00000392302 2609 ntTSL 5 BASIC14.02□□□□□ -0.17
HLA-DMBP28068 RAB4B-EGLN2-201ENST00000594136 2554 ntAPPRIS P1 TSL 2 BASIC14.02□□□□□ -0.17
HLA-DMBP28068 TRAPPC12-201ENST00000324266 2508 ntAPPRIS P2 TSL 1 (best) BASIC14.02□□□□□ -0.17
HLA-DMBP28068 NLE1-203ENST00000586869 5286 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
HLA-DMBP28068 AL590648.2-201ENST00000427949 2225 ntTSL 2 BASIC14.02□□□□□ -0.17
HLA-DMBP28068 USP18-201ENST00000215794 2129 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
HLA-DMBP28068 RUVBL1-202ENST00000464873 2126 ntTSL 2 BASIC14.02□□□□□ -0.17
HLA-DMBP28068 SCD5-201ENST00000273908 1995 ntTSL 2 BASIC14.02□□□□□ -0.17
HLA-DMBP28068 FNBP1-201ENST00000355681 1977 ntTSL 2 BASIC14.02□□□□□ -0.17
HLA-DMBP28068 UBL3-201ENST00000380680 4384 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
HLA-DMBP28068 C6orf223-203ENST00000442114 3109 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
HLA-DMBP28068 FLYWCH1P1-201ENST00000460917 1874 ntBASIC14.01□□□□□ -0.17
HLA-DMBP28068 AC093677.2-201ENST00000600169 1863 ntBASIC14.01□□□□□ -0.17
HLA-DMBP28068 PLCG1-201ENST00000244007 5285 ntAPPRIS P4 TSL 5 BASIC14.01□□□□□ -0.17
HLA-DMBP28068 GAL3ST4-204ENST00000423751 1695 ntTSL 3 BASIC14.01□□□□□ -0.17
HLA-DMBP28068 TICAM1-202ENST00000621756 1650 ntTSL 5 BASIC14.01□□□□□ -0.17
Retrieved 100 of 98,524 protein–RNA pairs in 35.4 ms