Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 DLG3-202ENST00000374355 5074 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
BDNFP23560 TMEM53-202ENST00000372237 2310 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
BDNFP23560 LIPG-203ENST00000577628 2323 ntTSL 2 BASIC19.34■□□□□ 0.69
BDNFP23560 USP48-201ENST00000308271 4595 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
BDNFP23560 TP53I3-202ENST00000335934 1635 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
BDNFP23560 RABAC1-201ENST00000222008 821 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
BDNFP23560 PGLS-201ENST00000252603 1028 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
BDNFP23560 BAALC-202ENST00000306391 243 ntTSL 5 BASIC19.34■□□□□ 0.69
BDNFP23560 BAALC-204ENST00000330955 222 ntTSL 5 BASIC19.34■□□□□ 0.69
BDNFP23560 EFCAB2-203ENST00000366523 1233 ntAPPRIS P1 TSL 3 BASIC19.34■□□□□ 0.69
BDNFP23560 MPIG6B-205ENST00000375810 910 ntAPPRIS ALT2 TSL 1 (best) BASIC19.34■□□□□ 0.69
BDNFP23560 UBE2C-206ENST00000405520 641 ntTSL 2 BASIC19.34■□□□□ 0.69
BDNFP23560 AP002383.4-201ENST00000442518 975 ntBASIC19.34■□□□□ 0.69
BDNFP23560 AP001625.2-201ENST00000442605 575 ntTSL 2 BASIC19.34■□□□□ 0.69
BDNFP23560 LINC01128-207ENST00000449005 874 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
BDNFP23560 AC010655.4-201ENST00000462662 707 ntTSL 4 BASIC19.34■□□□□ 0.69
BDNFP23560 AC099518.3-201ENST00000564808 809 ntAPPRIS P5 TSL 4 BASIC19.34■□□□□ 0.69
BDNFP23560 HOXB8-203ENST00000576562 743 ntAPPRIS ALT1 TSL 2 BASIC19.34■□□□□ 0.69
BDNFP23560 H3F3B-206ENST00000587560 551 ntAPPRIS P1 TSL 2 BASIC19.34■□□□□ 0.69
BDNFP23560 RABAC1-208ENST00000601078 728 ntTSL 3 BASIC19.34■□□□□ 0.69
BDNFP23560 GPR32P1-201ENST00000601788 811 ntBASIC19.34■□□□□ 0.69
BDNFP23560 UBE2C-208ENST00000617055 705 ntTSL 3 BASIC19.34■□□□□ 0.69
BDNFP23560 PPP1R3F-202ENST00000376188 2443 ntTSL 2 BASIC19.34■□□□□ 0.69
BDNFP23560 AK3-202ENST00000381809 2736 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
BDNFP23560 MARK2-211ENST00000513765 2671 ntAPPRIS ALT2 TSL 1 (best) BASIC19.34■□□□□ 0.69
BDNFP23560 RIMKLB-202ENST00000357529 5830 ntAPPRIS P1 TSL 5 BASIC19.34■□□□□ 0.69
BDNFP23560 TMEM177-204ENST00000424086 1738 ntAPPRIS P1 TSL 2 BASIC19.34■□□□□ 0.69
BDNFP23560 CHST2-201ENST00000309575 4582 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
BDNFP23560 KRT13-201ENST00000246635 1699 ntAPPRIS P4 TSL 1 (best) BASIC19.33■□□□□ 0.69
BDNFP23560 AC018755.2-202ENST00000429354 1926 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
BDNFP23560 LLGL2-203ENST00000392550 3509 ntAPPRIS P2 TSL 1 (best) BASIC19.33■□□□□ 0.69
BDNFP23560 CEP55-201ENST00000371485 2638 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
BDNFP23560 TMEM222-201ENST00000374076 1599 ntAPPRIS P2 TSL 1 (best) BASIC19.33■□□□□ 0.69
BDNFP23560 NMRK1-203ENST00000376811 2050 ntTSL 2 BASIC19.33■□□□□ 0.69
BDNFP23560 VEGFA-206ENST00000372077 2834 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
BDNFP23560 SPEG-204ENST00000396689 1274 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
BDNFP23560 DARS-AS1-202ENST00000419808 772 ntTSL 5 BASIC19.33■□□□□ 0.68
BDNFP23560 CHCHD2P8-201ENST00000429873 447 ntBASIC19.33■□□□□ 0.68
BDNFP23560 LINC01770-202ENST00000430109 510 ntTSL 3 BASIC19.33■□□□□ 0.68
BDNFP23560 AL162258.2-202ENST00000469931 831 ntTSL 5 BASIC19.33■□□□□ 0.68
BDNFP23560 MTG1-205ENST00000477902 1283 ntTSL 3 BASIC19.33■□□□□ 0.68
BDNFP23560 C10orf142-202ENST00000623589 1010 ntAPPRIS ALT2 TSL 5 BASIC19.33■□□□□ 0.68
BDNFP23560 MYOG-201ENST00000241651 1528 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
BDNFP23560 ASL-204ENST00000395331 1538 ntTSL 5 BASIC19.33■□□□□ 0.68
BDNFP23560 WNT8A-204ENST00000506684 1543 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
BDNFP23560 GSDMD-201ENST00000262580 1762 ntAPPRIS P2 TSL 1 (best) BASIC19.33■□□□□ 0.68
BDNFP23560 BX323043.1-201ENST00000641006 1765 ntBASIC19.33■□□□□ 0.68
BDNFP23560 PDXK-219ENST00000621478 1967 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
BDNFP23560 RAB28-202ENST00000330852 1715 ntAPPRIS ALT1 TSL 1 (best) BASIC19.33■□□□□ 0.68
BDNFP23560 DAPK2-205ENST00000558069 1473 ntTSL 5 BASIC19.33■□□□□ 0.68
BDNFP23560 LINC01819-201ENST00000422351 2156 ntTSL 5 BASIC19.33■□□□□ 0.68
BDNFP23560 SPSB1-201ENST00000328089 3120 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
BDNFP23560 ECEL1-201ENST00000304546 2865 ntAPPRIS P3 TSL 1 (best) BASIC19.33■□□□□ 0.68
BDNFP23560 TIMM8A-201ENST00000372902 1664 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
BDNFP23560 CD209-210ENST00000601951 1439 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.68
BDNFP23560 CTSA-201ENST00000191018 1898 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
BDNFP23560 AL024508.2-201ENST00000607749 1894 ntBASIC19.33■□□□□ 0.68
BDNFP23560 IL4I1-201ENST00000341114 2349 ntAPPRIS P4 TSL 1 (best) BASIC19.33■□□□□ 0.68
BDNFP23560 PCSK7-201ENST00000320934 4649 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
BDNFP23560 ROCK2-202ENST00000315872 8292 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
BDNFP23560 GLYCTK-201ENST00000305690 1371 ntTSL 5 BASIC19.32■□□□□ 0.68
BDNFP23560 IFRD2-204ENST00000436390 2275 ntAPPRIS P1 TSL 2 BASIC19.32■□□□□ 0.68
BDNFP23560 PAX1-205ENST00000613128 5352 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
BDNFP23560 CCDC74A-206ENST00000467992 1347 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
BDNFP23560 CIDEB-202ENST00000336557 2409 ntAPPRIS P1 TSL 2 BASIC19.32■□□□□ 0.68
BDNFP23560 ARMC6-202ENST00000392335 2383 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
BDNFP23560 PAFAH1B3-201ENST00000262890 1003 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
BDNFP23560 EGLN2-201ENST00000303961 2102 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
BDNFP23560 GYG2P1-201ENST00000357871 623 ntTSL 3 BASIC19.32■□□□□ 0.68
BDNFP23560 HES2-202ENST00000377836 507 ntTSL 2 BASIC19.32■□□□□ 0.68
BDNFP23560 ATP5J-203ENST00000400090 647 ntAPPRIS P1 TSL 2 BASIC19.32■□□□□ 0.68
BDNFP23560 SSR4P1-202ENST00000429427 967 ntTSL 5 BASIC19.32■□□□□ 0.68
BDNFP23560 PPOX-214ENST00000535223 664 ntTSL 3 BASIC19.32■□□□□ 0.68
BDNFP23560 AP1S2-206ENST00000545766 576 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
BDNFP23560 MRPL52-210ENST00000555345 895 ntTSL 2 BASIC19.32■□□□□ 0.68
BDNFP23560 AP002414.4-201ENST00000589764 1148 ntBASIC19.32■□□□□ 0.68
BDNFP23560 SETD3-209ENST00000630307 1281 ntTSL 5 BASIC19.32■□□□□ 0.68
BDNFP23560 VPS72-207ENST00000640458 689 ntTSL 5 BASIC19.32■□□□□ 0.68
BDNFP23560 KRT89P-201ENST00000620027 1478 ntBASIC19.32■□□□□ 0.68
BDNFP23560 STXBP2-201ENST00000221283 1876 ntAPPRIS P3 TSL 1 (best) BASIC19.32■□□□□ 0.68
BDNFP23560 IRAK3-202ENST00000457197 1853 ntTSL 2 BASIC19.32■□□□□ 0.68
BDNFP23560 FAM53A-205ENST00000472884 2086 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
BDNFP23560 HCCS-201ENST00000321143 2277 ntAPPRIS P1 TSL 2 BASIC19.32■□□□□ 0.68
BDNFP23560 ASB6-202ENST00000277459 2180 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
BDNFP23560 ATP6V0E2-203ENST00000456496 2722 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
BDNFP23560 ATP6V0E2-213ENST00000615196 2727 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
BDNFP23560 ZNF667-AS1-201ENST00000585445 1521 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
BDNFP23560 KRT9-201ENST00000246662 2290 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
BDNFP23560 SLC29A2-201ENST00000311161 2262 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
BDNFP23560 ZGPAT-202ENST00000355969 1871 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
BDNFP23560 TMEM79-203ENST00000405535 2201 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
BDNFP23560 MEN1-202ENST00000315422 3148 ntAPPRIS ALT1 TSL 5 BASIC19.31■□□□□ 0.68
BDNFP23560 PHF12-202ENST00000332830 4759 ntAPPRIS P1 TSL 2 BASIC19.31■□□□□ 0.68
BDNFP23560 CDKN2C-201ENST00000262662 2904 ntAPPRIS P1 TSL 2 BASIC19.31■□□□□ 0.68
BDNFP23560 FAM3A-201ENST00000322269 1815 ntTSL 5 BASIC19.31■□□□□ 0.68
BDNFP23560 OR10H5-201ENST00000308940 1132 ntAPPRIS P1 BASIC19.31■□□□□ 0.68
BDNFP23560 FIBP-202ENST00000357519 1248 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
BDNFP23560 AL133410.2-201ENST00000425499 696 ntTSL 5 BASIC19.31■□□□□ 0.68
BDNFP23560 GPHA2-202ENST00000532246 466 ntTSL 3 BASIC19.31■□□□□ 0.68
BDNFP23560 C1QTNF1-205ENST00000578229 1294 ntTSL 4 BASIC19.31■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 21.6 ms