Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 PRR5-201ENST00000006251 1767 ntTSL 2 BASIC18.31■□□□□ 0.52
MSH3P20585 TCP11-201ENST00000244645 2018 ntAPPRIS P3 TSL 1 (best) BASIC18.31■□□□□ 0.52
MSH3P20585 HR-202ENST00000381418 6336 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
MSH3P20585 ANKS3-202ENST00000446014 2265 ntTSL 5 BASIC18.31■□□□□ 0.52
MSH3P20585 KLHL40-201ENST00000287777 2517 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
MSH3P20585 GABBR1-204ENST00000377016 4299 ntTSL 5 BASIC18.31■□□□□ 0.52
MSH3P20585 ST3GAL3-201ENST00000262915 2470 ntTSL 5 BASIC18.31■□□□□ 0.52
MSH3P20585 DHRS12-201ENST00000218981 1970 ntTSL 2 BASIC18.31■□□□□ 0.52
MSH3P20585 AGO3-202ENST00000324350 1726 ntTSL 2 BASIC18.31■□□□□ 0.52
MSH3P20585 UMOD-202ENST00000396134 2408 ntAPPRIS ALT2 TSL 2 BASIC18.31■□□□□ 0.52
MSH3P20585 TFEB-203ENST00000358871 2188 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
MSH3P20585 SLC26A11-212ENST00000572725 1862 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
MSH3P20585 KLHL17-201ENST00000338591 2560 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
MSH3P20585 SHE-201ENST00000304760 6243 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
MSH3P20585 SLC5A10-203ENST00000395645 2069 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
MSH3P20585 FST-201ENST00000256759 2519 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
MSH3P20585 SCAND1-203ENST00000615116 1371 ntAPPRIS P1 TSL 5 BASIC18.3■□□□□ 0.52
MSH3P20585 CLSTN1-202ENST00000377298 5221 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
MSH3P20585 ESPN-216ENST00000636330 4731 ntAPPRIS ALT2 TSL 5 BASIC18.3■□□□□ 0.52
MSH3P20585 SLC2A11-204ENST00000398356 2388 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
MSH3P20585 JPH2-201ENST00000342272 1923 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
MSH3P20585 PAX3-201ENST00000258387 958 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
MSH3P20585 HRAS-201ENST00000311189 894 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
MSH3P20585 TSPY5P-201ENST00000426936 936 ntBASIC18.3■□□□□ 0.52
MSH3P20585 AC007731.5-201ENST00000429594 644 ntAPPRIS P1 TSL 5 BASIC18.3■□□□□ 0.52
MSH3P20585 WDR45-218ENST00000473974 1077 ntTSL 5 BASIC18.3■□□□□ 0.52
MSH3P20585 C7orf49-209ENST00000483029 596 ntTSL 2 BASIC18.3■□□□□ 0.52
MSH3P20585 AC034232.1-201ENST00000506026 1064 ntBASIC18.3■□□□□ 0.52
MSH3P20585 ZNF706-206ENST00000519744 785 ntTSL 3 BASIC18.3■□□□□ 0.52
MSH3P20585 DRAP1-205ENST00000527119 581 ntTSL 5 BASIC18.3■□□□□ 0.52
MSH3P20585 ETFA-216ENST00000560726 942 ntTSL 3 BASIC18.3■□□□□ 0.52
MSH3P20585 UBA52-210ENST00000598780 668 ntAPPRIS P1 TSL 3 BASIC18.3■□□□□ 0.52
MSH3P20585 AC010240.3-201ENST00000607688 395 ntBASIC18.3■□□□□ 0.52
MSH3P20585 ZNF419-205ENST00000424930 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
MSH3P20585 ENDOV-225ENST00000522751 1475 ntTSL 5 BASIC18.3■□□□□ 0.52
MSH3P20585 EXTL3-201ENST00000220562 6483 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
MSH3P20585 ASIC3-202ENST00000349064 1895 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
MSH3P20585 C2CD2L-201ENST00000336702 4771 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
MSH3P20585 COL4A3BP-201ENST00000261415 2262 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
MSH3P20585 CYR61-201ENST00000451137 2290 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
MSH3P20585 MCRS1-202ENST00000357123 1428 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
MSH3P20585 DOK4-218ENST00000569548 1848 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
MSH3P20585 MAGED2-213ENST00000627068 1811 ntAPPRIS ALT2 TSL 5 BASIC18.3■□□□□ 0.52
MSH3P20585 SORBS3-221ENST00000523965 2028 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
MSH3P20585 TYRO3-201ENST00000263798 8207 ntAPPRIS P3 TSL 1 (best) BASIC18.3■□□□□ 0.52
MSH3P20585 ADCY9-201ENST00000294016 7725 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
MSH3P20585 AL512380.2-201ENST00000637901 1780 ntTSL 5 BASIC18.3■□□□□ 0.52
MSH3P20585 AC018755.2-202ENST00000429354 1926 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
MSH3P20585 MRAS-204ENST00000464896 1534 ntTSL 2 BASIC18.29■□□□□ 0.52
MSH3P20585 IFRD2-204ENST00000436390 2275 ntAPPRIS P1 TSL 2 BASIC18.29■□□□□ 0.52
MSH3P20585 PLCG1-201ENST00000244007 5285 ntAPPRIS P4 TSL 5 BASIC18.29■□□□□ 0.52
MSH3P20585 SEC61A2-201ENST00000298428 1893 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
MSH3P20585 ZGPAT-202ENST00000355969 1871 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
MSH3P20585 SOWAHC-201ENST00000356454 4657 ntAPPRIS P1 BASIC18.29■□□□□ 0.52
MSH3P20585 PCSK5-201ENST00000376752 5756 ntAPPRIS P3 TSL 1 (best) BASIC18.29■□□□□ 0.52
MSH3P20585 GRB7-202ENST00000394204 1667 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
MSH3P20585 MTSS1L-204ENST00000616026 2241 ntAPPRIS ALT2 TSL 5 BASIC18.29■□□□□ 0.52
MSH3P20585 SLCO4A1-201ENST00000217159 2776 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
MSH3P20585 CLK1-205ENST00000434813 2026 ntTSL 2 BASIC18.29■□□□□ 0.52
MSH3P20585 MLX-201ENST00000246912 2586 ntAPPRIS P3 TSL 1 (best) BASIC18.29■□□□□ 0.52
MSH3P20585 NF2-203ENST00000353887 1845 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
MSH3P20585 LCE4A-202ENST00000368777 672 ntAPPRIS P1 TSL 2 BASIC18.29■□□□□ 0.52
MSH3P20585 MIEN1-201ENST00000394231 1006 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
MSH3P20585 DMKN-208ENST00000424570 1293 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
MSH3P20585 AC103564.1-201ENST00000437330 562 ntTSL 5 BASIC18.29■□□□□ 0.52
MSH3P20585 AC092647.4-201ENST00000457211 535 ntBASIC18.29■□□□□ 0.52
MSH3P20585 FIS1-207ENST00000474120 915 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
MSH3P20585 C14orf144-201ENST00000553757 537 ntTSL 4 BASIC18.29■□□□□ 0.52
MSH3P20585 AC021739.3-201ENST00000557908 855 ntTSL 2 BASIC18.29■□□□□ 0.52
MSH3P20585 CENPX-206ENST00000580435 710 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
MSH3P20585 FAM104A-205ENST00000581110 512 ntTSL 2 BASIC18.29■□□□□ 0.52
MSH3P20585 AC011498.2-201ENST00000588798 540 ntTSL 3 BASIC18.29■□□□□ 0.52
MSH3P20585 AC004076.1-201ENST00000596831 664 ntAPPRIS P1 TSL 2 BASIC18.29■□□□□ 0.52
MSH3P20585 ZNF534-205ENST00000617900 1085 ntTSL 2 BASIC18.29■□□□□ 0.52
MSH3P20585 ELMOD1-202ENST00000443271 1990 ntAPPRIS P1 TSL 2 BASIC18.29■□□□□ 0.52
MSH3P20585 MAFF-206ENST00000538320 2458 ntAPPRIS P1 TSL 4 BASIC18.29■□□□□ 0.52
MSH3P20585 LRRC20-205ENST00000395010 2959 ntTSL 3 BASIC18.29■□□□□ 0.52
MSH3P20585 SSX2IP-210ENST00000605755 1933 ntTSL 2 BASIC18.29■□□□□ 0.52
MSH3P20585 MSLN-207ENST00000566549 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
MSH3P20585 MROH1-202ENST00000423230 1712 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
MSH3P20585 OSMR-202ENST00000502536 1740 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
MSH3P20585 MCU-202ENST00000373053 2949 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
MSH3P20585 ZMYM5-202ENST00000382905 1382 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
MSH3P20585 ABCG4-206ENST00000622721 2553 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
MSH3P20585 ANKRD6-202ENST00000369408 5258 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
MSH3P20585 LARGE2-201ENST00000325468 2522 ntAPPRIS P3 TSL 1 (best) BASIC18.28■□□□□ 0.52
MSH3P20585 ALDH3B1-206ENST00000615463 1300 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
MSH3P20585 PCCA-203ENST00000376286 2481 ntTSL 2 BASIC18.28■□□□□ 0.52
MSH3P20585 BSG-201ENST00000333511 1974 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
MSH3P20585 ADGRA3-202ENST00000334304 4566 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
MSH3P20585 AC005082.1-201ENST00000413042 2259 ntBASIC18.28■□□□□ 0.52
MSH3P20585 CIRBP-202ENST00000413636 1606 ntTSL 2 BASIC18.28■□□□□ 0.52
MSH3P20585 SIL1-202ENST00000394817 1923 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
MSH3P20585 ATP2A2-201ENST00000308664 4453 ntAPPRIS ALT1 TSL 1 (best) BASIC18.28■□□□□ 0.52
MSH3P20585 AC003075.1-204ENST00000433005 540 ntTSL 2 BASIC18.28■□□□□ 0.52
MSH3P20585 DUX4L26-201ENST00000489078 1255 ntBASIC18.28■□□□□ 0.52
MSH3P20585 CNTD2-203ENST00000513948 787 ntAPPRIS ALT2 TSL 2 BASIC18.28■□□□□ 0.52
MSH3P20585 LINC00599-204ENST00000521242 716 ntTSL 3 BASIC18.28■□□□□ 0.52
MSH3P20585 CD81-212ENST00000526072 1172 ntTSL 5 BASIC18.28■□□□□ 0.52
MSH3P20585 C12orf43-206ENST00000537817 1270 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 23.7 ms