Protein–RNA interactions for Protein: P16989

YBX3, Y-box-binding protein 3, humanhuman

Known RBP eCLIP

Length 372 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3P16989 MAEA-208ENST00000505839 1444 ntTSL 2 BASIC24.44■■□□□ 1.52e-7■■□□□ 13.3
YBX3P16989 MAEA-213ENST00000510794 1607 ntTSL 2 BASIC24.35■■□□□ 1.492e-7■■□□□ 13.3
YBX3P16989 DYM-219ENST00000584977 656 ntTSL 323.51■■□□□ 1.352e-7■■□□□ 13.3
YBX3P16989 DYM-204ENST00000577481 567 ntTSL 523.12■■□□□ 1.292e-7■■□□□ 13.3
YBX3P16989 VPS52-214ENST00000463486 925 ntTSL 522.87■■□□□ 1.257e-11■■□□□ 13.3
YBX3P16989 DYM-209ENST00000579058 869 ntTSL 322.39■■□□□ 1.172e-7■■□□□ 13.3
YBX3P16989 VPS52-215ENST00000464425 1060 ntTSL 522.06■■□□□ 1.127e-11■■□□□ 13.3
YBX3P16989 MAEA-219ENST00000514708 1945 ntTSL 2 BASIC21.4■■□□□ 1.022e-7■■□□□ 13.3
YBX3P16989 ZNF562-203ENST00000585350 577 ntTSL 520.77■□□□□ 0.922e-7■■□□□ 13.3
YBX3P16989 SNX27-204ENST00000458013 6403 ntAPPRIS ALT1 TSL 5 BASIC20.02■□□□□ 0.82e-7■■□□□ 13.3
YBX3P16989 MAEA-209ENST00000506530 5371 ntTSL 219.97■□□□□ 0.792e-7■■□□□ 13.3
YBX3P16989 MAEA-201ENST00000264750 2058 ntTSL 2 BASIC19.9■□□□□ 0.782e-7■■□□□ 13.3
YBX3P16989 MAEA-215ENST00000512289 2426 ntTSL 219.16■□□□□ 0.662e-7■■□□□ 13.3
YBX3P16989 MAEA-207ENST00000505177 1340 ntTSL 5 BASIC19.13■□□□□ 0.652e-7■■□□□ 13.3
YBX3P16989 SNX27-202ENST00000368841 7070 ntTSL 1 (best)18.52■□□□□ 0.562e-7■■□□□ 13.3
YBX3P16989 SNX27-203ENST00000368843 7197 ntAPPRIS P3 TSL 1 (best) BASIC18.32■□□□□ 0.522e-7■■□□□ 13.3
YBX3P16989 MAEA-202ENST00000303400 2222 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.492e-7■■□□□ 13.3
YBX3P16989 ACTR1B-202ENST00000451664 1151 ntTSL 517.76■□□□□ 0.432e-7■■□□□ 13.3
YBX3P16989 LDAH-205ENST00000412261 566 ntTSL 417.58■□□□□ 0.42e-7■■□□□ 13.3
YBX3P16989 MAEA-204ENST00000503162 2069 ntTSL 217.41■□□□□ 0.382e-7■■□□□ 13.3
YBX3P16989 DYM-211ENST00000581409 573 ntTSL 417.31■□□□□ 0.362e-7■■□□□ 13.3
YBX3P16989 TXNRD1-221ENST00000529784 607 ntTSL 416.6■□□□□ 0.252e-7■■□□□ 13.3
YBX3P16989 TXNRD1-223ENST00000531691 728 ntTSL 216.04■□□□□ 0.162e-7■■□□□ 13.3
YBX3P16989 MAEA-220ENST00000515766 3136 ntTSL 215.74■□□□□ 0.112e-7■■□□□ 13.3
YBX3P16989 LDAH-213ENST00000626491 1179 ntTSL 2 BASIC15.47■□□□□ 0.072e-7■■□□□ 13.3
YBX3P16989 TXNRD1-216ENST00000527335 786 ntTSL 515.42■□□□□ 0.062e-7■■□□□ 13.3
YBX3P16989 NFAT5-210ENST00000567990 2855 ntTSL 515.34■□□□□ 0.052e-7■■□□□ 13.3
YBX3P16989 ZNF93-208ENST00000592613 868 ntTSL 315.21■□□□□ 0.033e-14■■□□□ 13.3
YBX3P16989 LDAH-204ENST00000403006 1895 ntTSL 5 BASIC15.09■□□□□ 0.012e-7■■□□□ 13.3
YBX3P16989 TXNRD1-211ENST00000526266 577 ntTSL 414.56□□□□□ -0.082e-7■■□□□ 13.3
YBX3P16989 LDAH-207ENST00000432947 548 ntTSL 414.41□□□□□ -0.12e-7■■□□□ 13.3
YBX3P16989 VPS52-212ENST00000445902 2960 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.167e-11■■□□□ 13.3
YBX3P16989 ZNF93-205ENST00000591366 590 ntTSL 3 BASIC13.64□□□□□ -0.233e-14■■□□□ 13.3
YBX3P16989 LDAH-202ENST00000381090 2045 ntTSL 5 BASIC13.57□□□□□ -0.242e-7■■□□□ 13.3
YBX3P16989 ZNF93-206ENST00000592160 1334 ntTSL 1 (best) BASIC13.34□□□□□ -0.273e-14■■□□□ 13.3
YBX3P16989 TXNRD1-213ENST00000526580 400 ntTSL 1 (best)13.15□□□□□ -0.32e-7■■□□□ 13.3
YBX3P16989 TXNRD1-222ENST00000531689 554 ntTSL 412.89□□□□□ -0.352e-7■■□□□ 13.3
YBX3P16989 VPS52-218ENST00000482399 3338 ntTSL 2 BASIC12.88□□□□□ -0.357e-11■■□□□ 13.3
YBX3P16989 ZNF93-204ENST00000589903 583 ntTSL 412.86□□□□□ -0.353e-14■■□□□ 13.3
YBX3P16989 ZNF93-207ENST00000592245 763 ntTSL 512.31□□□□□ -0.443e-14■■□□□ 13.3
YBX3P16989 SNX27-201ENST00000368838 1308 ntTSL 1 (best) BASIC11.6□□□□□ -0.552e-7■■□□□ 13.3
YBX3P16989 VPS52-217ENST00000478934 2602 ntTSL 211.17□□□□□ -0.627e-11■■□□□ 13.3
YBX3P16989 ZNF93-202ENST00000586021 583 ntTSL 310.95□□□□□ -0.663e-14■■□□□ 13.3
YBX3P16989 TXNRD1-218ENST00000528079 629 ntTSL 410.64□□□□□ -0.712e-7■■□□□ 13.3
YBX3P16989 ZNF93-203ENST00000588146 570 ntTSL 410.63□□□□□ -0.713e-14■■□□□ 13.3
YBX3P16989 ZNF562-207ENST00000589542 491 ntTSL 310.08□□□□□ -0.82e-7■■□□□ 13.3
YBX3P16989 LDAH-201ENST00000237822 2907 ntAPPRIS P1 TSL 1 (best) BASIC10.01□□□□□ -0.812e-7■■□□□ 13.3
YBX3P16989 UBLCP1-201ENST00000296786 2392 ntAPPRIS P1 TSL 1 (best) BASIC9.67□□□□□ -0.862e-7■■□□□ 13.3
YBX3P16989 PTPRC-204ENST00000367379 517 ntTSL 59.36□□□□□ -0.912e-7■■□□□ 13.3
YBX3P16989 LDAH-208ENST00000435420 3837 ntTSL 2 BASIC8.77□□□□□ -1.012e-7■■□□□ 13.3
YBX3P16989 LDAH-209ENST00000440866 3728 ntTSL 2 BASIC8.68□□□□□ -1.022e-7■■□□□ 13.3
YBX3P16989 NFAT5-206ENST00000563474 732 ntTSL 38.29□□□□□ -1.082e-7■■□□□ 13.3
YBX3P16989 DYM-218ENST00000583353 554 ntTSL 47.69□□□□□ -1.182e-7■■□□□ 13.3
YBX3P16989 ZNF562-206ENST00000588653 585 ntTSL 27.27□□□□□ -1.252e-7■■□□□ 13.3
YBX3P16989 LDAH-212ENST00000619656 3663 ntTSL 2 BASIC7.26□□□□□ -1.252e-7■■□□□ 13.3
YBX3P16989 HERC2-201ENST00000261609 15337 ntAPPRIS P1 TSL 1 (best) BASIC7.15□□□□□ -1.262e-7■■□□□ 13.3
YBX3P16989 ADAR-208ENST00000529168 3585 ntAPPRIS ALT2 TSL 57.04□□□□□ -1.282e-7■■□□□ 13.3
YBX3P16989 NFAT5-205ENST00000562429 562 ntTSL 56.38□□□□□ -1.392e-7■■□□□ 13.3
YBX3P16989 PTPRC-210ENST00000462363 926 ntTSL 1 (best)6.23□□□□□ -1.412e-7■■□□□ 13.3
YBX3P16989 ZNF562-205ENST00000587392 583 ntTSL 2 BASIC5.68□□□□□ -1.52e-7■■□□□ 13.3
YBX3P16989 LDAH-211ENST00000541941 3807 ntTSL 2 BASIC5.68□□□□□ -1.52e-7■■□□□ 13.3
YBX3P16989 PTPRC-214ENST00000530727 1962 ntTSL 1 (best)5.54□□□□□ -1.522e-7■■□□□ 13.3
YBX3P16989 PTPRC-213ENST00000529828 2336 ntTSL 1 (best)5.08□□□□□ -1.62e-7■■□□□ 13.3
YBX3P16989 PTPRC-205ENST00000391970 408 ntTSL 1 (best)4.34□□□□□ -1.712e-7■■□□□ 13.3
YBX3P16989 PTPRC-203ENST00000367367 2291 ntTSL 24.01□□□□□ -1.772e-7■■□□□ 13.3
YBX3P16989 PTPRC-208ENST00000427110 264 ntTSL 1 (best)3.86□□□□□ -1.792e-7■■□□□ 13.3
YBX3P16989 HNRNPAB-207ENST00000514633 1571 ntAPPRIS ALT2 TSL 5 BASIC35.47■■■■□ 3.272e-7■■□□□ 13.3
YBX3P16989 HNRNPAB-206ENST00000506339 1747 ntAPPRIS ALT2 TSL 5 BASIC32.12■■■□□ 2.732e-7■■□□□ 13.3
YBX3P16989 HNRNPAB-204ENST00000504898 1785 ntAPPRIS P4 TSL 1 (best) BASIC32.09■■■□□ 2.732e-7■■□□□ 13.3
YBX3P16989 HNRNPAB-205ENST00000506259 1674 ntAPPRIS ALT2 TSL 1 (best) BASIC31.06■■■□□ 2.562e-7■■□□□ 13.3
YBX3P16989 HNRNPAB-208ENST00000515193 1595 ntAPPRIS ALT2 TSL 5 BASIC30.27■■■□□ 2.442e-7■■□□□ 13.3
YBX3P16989 HNRNPAB-202ENST00000358344 1796 ntAPPRIS P4 TSL 1 (best) BASIC30.09■■■□□ 2.412e-7■■□□□ 13.3
YBX3P16989 HNRNPAB-201ENST00000355836 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC28.47■■■□□ 2.152e-7■■□□□ 13.3
YBX3P16989 COMT-210ENST00000467943 546 ntTSL 231.35■■■□□ 2.613e-17■■□□□ 13.3
YBX3P16989 VCL-207ENST00000624354 3307 ntTSL 28.98□□□□□ -0.975e-8■■□□□ 13.3
YBX3P16989 COPS6-201ENST00000303904 1432 ntAPPRIS P2 TSL 1 (best) BASIC36.62■■■■□ 3.456e-7■■□□□ 13.3
YBX3P16989 COPS6-202ENST00000418625 1107 ntAPPRIS ALT2 TSL 5 BASIC21.05■□□□□ 0.966e-7■■□□□ 13.3
YBX3P16989 EIF2AK4-201ENST00000263791 5499 ntAPPRIS P1 TSL 2 BASIC17.37■□□□□ 0.373e-6■■□□□ 13.3
YBX3P16989 EIF2AK4-210ENST00000560855 4789 ntTSL 513.68□□□□□ -0.223e-6■■□□□ 13.3
YBX3P16989 EIF3I-206ENST00000489353 527 ntTSL 313.62□□□□□ -0.234e-17■■□□□ 13.3
YBX3P16989 COMT-204ENST00000403710 1548 ntAPPRIS P3 TSL 5 BASIC29.25■■■□□ 2.271e-14■■□□□ 13.3
YBX3P16989 COMT-206ENST00000407537 1457 ntAPPRIS P3 TSL 5 BASIC27.19■■□□□ 1.941e-14■■□□□ 13.3
YBX3P16989 COMT-203ENST00000403184 2217 ntTSL 2 BASIC24.59■■□□□ 1.532e-14■■□□□ 13.3
YBX3P16989 COMT-207ENST00000412786 871 ntAPPRIS ALT2 TSL 221.1■□□□□ 0.971e-14■■□□□ 13.3
YBX3P16989 COMT-209ENST00000449653 1035 ntAPPRIS ALT2 TSL 1 (best) BASIC21.1■□□□□ 0.971e-14■■□□□ 13.3
YBX3P16989 COMT-202ENST00000361682 2437 ntAPPRIS P3 TSL 1 (best) BASIC20.97■□□□□ 0.951e-14■■□□□ 13.3
YBX3P16989 COMT-201ENST00000207636 1319 ntTSL 519.94■□□□□ 0.781e-14■■□□□ 13.3
YBX3P16989 COMT-205ENST00000406520 1339 ntAPPRIS P3 TSL 1 (best) BASIC19.94■□□□□ 0.781e-14■■□□□ 13.3
YBX3P16989 COMT-211ENST00000493893 354 ntTSL 318.63■□□□□ 0.574e-14■■□□□ 13.3
YBX3P16989 COMT-208ENST00000428707 724 ntTSL 317.69■□□□□ 0.427e-14■■□□□ 13.3
YBX3P16989 MIR4761-201ENST00000585066 82 ntBASIC15.81■□□□□ 0.121e-11■■□□□ 13.3
YBX3P16989 TCF12-203ENST00000343827 3956 ntTSL 1 (best) BASIC4.3□□□□□ -1.729e-7■■□□□ 13.3
YBX3P16989 PPP1R11-204ENST00000376769 1689 ntTSL 2 BASIC15.79■□□□□ 0.123e-9■■□□□ 13.3
YBX3P16989 PPP1R11-205ENST00000376772 1731 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.023e-9■■□□□ 13.3
YBX3P16989 PPP1R11-203ENST00000376765 1536 ntTSL 3 BASIC12.08□□□□□ -0.483e-9■■□□□ 13.3
YBX3P16989 PPP1R11-202ENST00000376763 1464 ntTSL 3 BASIC11.78□□□□□ -0.523e-9■■□□□ 13.3
YBX3P16989 PPP1R11-206ENST00000376773 1640 ntTSL 3 BASIC8.83□□□□□ -13e-9■■□□□ 13.3
YBX3P16989 PPP1R11-201ENST00000376758 1723 ntTSL 2 BASIC7.99□□□□□ -1.133e-9■■□□□ 13.3
YBX3P16989 TALDO1-208ENST00000532685 568 ntTSL 223.44■■□□□ 1.345e-22■■□□□ 13.3
YBX3P16989 RNF168-201ENST00000318037 5347 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.171e-7■■□□□ 13.3
Retrieved 100 of 29,075 protein–RNA pairs in 245.8 ms