RNA–Protein interactions for RNA: ENST00000530727.5

PTPRC-214, Transcript of protein tyrosine phosphatase, receptor type C, humanhuman

TSL 1 (best)

Gene PTPRC, Length 1,962 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRC-214ENST00000530727 AEBP2Q6ZN18 517 aaPredicted RBP20.1■□□□□ 0.81
PTPRC-214ENST00000530727 CHIC1Q5VXU3 224 aa19.56■□□□□ 0.72
PTPRC-214ENST00000530727 PHF23Q9BUL5 403 aaPredicted RBP17.17■□□□□ 0.34
PTPRC-214ENST00000530727 SENP3Q9H4L4 574 aaPredicted RBP17.1■□□□□ 0.33
PTPRC-214ENST00000530727 PLPPR3Q6T4P5 718 aa15.87■□□□□ 0.13
PTPRC-214ENST00000530727 FOXD1Q16676 465 aa15.86■□□□□ 0.13
PTPRC-214ENST00000530727 ADRA2BP18089 450 aa15.18■□□□□ 0.02
PTPRC-214ENST00000530727 PPP6R1Q9UPN7 881 aa15.18■□□□□ 0.02
PTPRC-214ENST00000530727 PIAS4Q8N2W9 510 aaPredicted RBP14.97□□□□□ -0.01
PTPRC-214ENST00000530727 MSH5O43196 834 aa14.69□□□□□ -0.06
PTPRC-214ENST00000530727 PPP4R3CPQ6ZMV5 832 aa13.96□□□□□ -0.17
PTPRC-214ENST00000530727 SCAF1Q9H7N4 1312 aaKnown RBP13.93□□□□□ -0.18
PTPRC-214ENST00000530727 MAPK8IP2Q13387 824 aaPredicted RBP13.8□□□□□ -0.2
PTPRC-214ENST00000530727 POTEDQ86YR6 584 aa13.68□□□□□ -0.22
PTPRC-214ENST00000530727 DMRT2Q9Y5R5 561 aa13.62□□□□□ -0.23
PTPRC-214ENST00000530727 CNKSR2Q8WXI2 1034 aa13.6□□□□□ -0.23
PTPRC-214ENST00000530727 NCBP3Q53F19 620 aaKnown RBP13.59□□□□□ -0.23
PTPRC-214ENST00000530727 KCNA4P22459 653 aa13.54□□□□□ -0.24
PTPRC-214ENST00000530727 NPM3O75607 178 aaKnown RBP13.37□□□□□ -0.27
PTPRC-214ENST00000530727 RNF216Q9NWF9 866 aaPredicted RBP13.34□□□□□ -0.27
PTPRC-214ENST00000530727 HOXD11P31277 338 aaPredicted RBP13.3□□□□□ -0.28
PTPRC-214ENST00000530727 DCAF8L1A6NGE4 600 aa13.1□□□□□ -0.31
PTPRC-214ENST00000530727 DNAJC5BQ9UF47 199 aa12.94□□□□□ -0.34
PTPRC-214ENST00000530727 SLC4A1APQ9BWU0 796 aaKnown RBP12.89□□□□□ -0.35
PTPRC-214ENST00000530727 GRWD1Q9BQ67 446 aaKnown RBP eCLIP12.72□□□□□ -0.37
PTPRC-214ENST00000530727 SLC4A2P04920 1241 aa12.63□□□□□ -0.39
PTPRC-214ENST00000530727 RNF39Q9H2S5 420 aa12.56□□□□□ -0.4
PTPRC-214ENST00000530727 FOXD4L1Q9NU39 408 aa12.5□□□□□ -0.41
PTPRC-214ENST00000530727 U3KPZ7 1027 aaPredicted RBP12.47□□□□□ -0.41
PTPRC-214ENST00000530727 EHMT2Q96KQ7 1210 aa12.45□□□□□ -0.42
PTPRC-214ENST00000530727 ZBTB22O15209 634 aa12.43□□□□□ -0.42
PTPRC-214ENST00000530727 C1QBPQ07021 282 aaKnown RBP12.41□□□□□ -0.42
PTPRC-214ENST00000530727 MYCNP04198 464 aaPredicted RBP12.38□□□□□ -0.43
PTPRC-214ENST00000530727 CACNB1Q02641 598 aaPredicted RBP12.33□□□□□ -0.44
PTPRC-214ENST00000530727 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.32□□□□□ -0.44
PTPRC-214ENST00000530727 HNRNPUL2Q1KMD3 747 aaKnown RBP12.32□□□□□ -0.44
PTPRC-214ENST00000530727 CSRNP3Q8WYN3 585 aa12.3□□□□□ -0.44
PTPRC-214ENST00000530727 SAMD1Q6SPF0 538 aaPredicted RBP12.26□□□□□ -0.45
PTPRC-214ENST00000530727 APLP2Q06481 763 aa12.22□□□□□ -0.45
PTPRC-214ENST00000530727 SPINK5Q9NQ38 1064 aaPredicted RBP12.16□□□□□ -0.46
PTPRC-214ENST00000530727 CAPN15O75808 1086 aa12.14□□□□□ -0.47
PTPRC-214ENST00000530727 TRHP20396 242 aaPredicted RBP12.07□□□□□ -0.48
PTPRC-214ENST00000530727 ATXN8OSP0DMR3 200 aa12.05□□□□□ -0.48
PTPRC-214ENST00000530727 ZNF219Q9P2Y4 722 aaPredicted RBP12.05□□□□□ -0.48
PTPRC-214ENST00000530727 ATF5Q9Y2D1 282 aaPredicted RBP12.02□□□□□ -0.49
PTPRC-214ENST00000530727 DSG3P32926 999 aa11.92□□□□□ -0.5
PTPRC-214ENST00000530727 ABCB7O75027 752 aa11.9□□□□□ -0.5
PTPRC-214ENST00000530727 POLA2Q14181 598 aa11.83□□□□□ -0.52
PTPRC-214ENST00000530727 ZBTB12Q9Y330 459 aaPredicted RBP11.64□□□□□ -0.55
PTPRC-214ENST00000530727 FBLN2P98095 1184 aa11.57□□□□□ -0.56
PTPRC-214ENST00000530727 MKRN4PQ13434 485 aaPredicted RBP11.49□□□□□ -0.57
PTPRC-214ENST00000530727 OSCARQ8IYS5 282 aa11.43□□□□□ -0.58
PTPRC-214ENST00000530727 RBM42Q9BTD8 480 aaKnown RBP11.39□□□□□ -0.59
PTPRC-214ENST00000530727 SPDYE2BA6NHP3 402 aa11.3□□□□□ -0.6
PTPRC-214ENST00000530727 SPDYE6P0CI01 402 aa11.3□□□□□ -0.6
PTPRC-214ENST00000530727 SPDYE2Q495Y8 402 aa11.3□□□□□ -0.6
PTPRC-214ENST00000530727 ZNF692Q9BU19 519 aaPredicted RBP11.26□□□□□ -0.61
PTPRC-214ENST00000530727 SPDYE4A6NLX3 237 aa11.23□□□□□ -0.61
PTPRC-214ENST00000530727 AKT1S1Q96B36 256 aa11.21□□□□□ -0.61
PTPRC-214ENST00000530727 SSUH2Q9Y2M2 353 aa11.19□□□□□ -0.62
PTPRC-214ENST00000530727 FKBP8Q14318 412 aa11.16□□□□□ -0.62
PTPRC-214ENST00000530727 PABPN1Q86U42 306 aaKnown RBP eCLIP11.1□□□□□ -0.63
PTPRC-214ENST00000530727 REM2Q8IYK8 340 aaPredicted RBP11.1□□□□□ -0.63
PTPRC-214ENST00000530727 SPDYE1Q8NFV5 336 aaPredicted RBP11□□□□□ -0.65
PTPRC-214ENST00000530727 PITPNM1O00562 1244 aa10.99□□□□□ -0.65
PTPRC-214ENST00000530727 CLEC11AQ9Y240 323 aa10.99□□□□□ -0.65
PTPRC-214ENST00000530727 PROM2Q8N271 834 aa10.97□□□□□ -0.65
PTPRC-214ENST00000530727 CHRDL2Q6WN34 429 aa10.94□□□□□ -0.66
PTPRC-214ENST00000530727 STAG3Q9UJ98 1225 aa10.9□□□□□ -0.66
PTPRC-214ENST00000530727 PRR29P0C7W0 189 aa10.86□□□□□ -0.67
PTPRC-214ENST00000530727 FBXO3Q9UK99 471 aa10.79□□□□□ -0.68
PTPRC-214ENST00000530727 FXR2P51116 673 aaKnown RBP eCLIP10.77□□□□□ -0.68
PTPRC-214ENST00000530727 PIP4P2Q8N4L2 257 aa10.77□□□□□ -0.68
PTPRC-214ENST00000530727 PRKAR2AP13861 404 aaKnown RBP10.72□□□□□ -0.69
PTPRC-214ENST00000530727 POTEHQ6S545 545 aa10.7□□□□□ -0.7
PTPRC-214ENST00000530727 CHADLQ6NUI6 762 aa10.7□□□□□ -0.7
PTPRC-214ENST00000530727 MIER1Q8N108 512 aa10.66□□□□□ -0.7
PTPRC-214ENST00000530727 CREBZFQ9NS37 354 aa10.66□□□□□ -0.7
PTPRC-214ENST00000530727 PLCD3Q8N3E9 789 aa10.66□□□□□ -0.7
PTPRC-214ENST00000530727 PLEKHG5O94827 1062 aa10.65□□□□□ -0.7
PTPRC-214ENST00000530727 VASPP50552 380 aaPredicted RBP10.64□□□□□ -0.71
PTPRC-214ENST00000530727 FARP1Q9Y4F1 1045 aaPredicted RBP10.58□□□□□ -0.72
PTPRC-214ENST00000530727 ZBTB47Q9UFB7 747 aaPredicted RBP10.54□□□□□ -0.72
PTPRC-214ENST00000530727 NPM1P06748 294 aaKnown RBP eCLIP10.52□□□□□ -0.72
PTPRC-214ENST00000530727 MNX1P50219 401 aaPredicted RBP10.52□□□□□ -0.72
PTPRC-214ENST00000530727 KLHL34Q8N239 644 aa10.51□□□□□ -0.73
PTPRC-214ENST00000530727 HAX1O00165 279 aa10.48□□□□□ -0.73
PTPRC-214ENST00000530727 IFNLR1Q8IU57 520 aaPredicted RBP10.46□□□□□ -0.73
PTPRC-214ENST00000530727 C19orf67A6NJJ6 358 aa10.41□□□□□ -0.74
PTPRC-214ENST00000530727 CD44P16070 742 aaKnown RBP10.41□□□□□ -0.74
PTPRC-214ENST00000530727 PAK3O75914 559 aaPredicted RBP10.39□□□□□ -0.75
PTPRC-214ENST00000530727 SPOCK2Q92563 424 aa10.38□□□□□ -0.75
PTPRC-214ENST00000530727 NUBP1P53384 320 aa10.37□□□□□ -0.75
PTPRC-214ENST00000530727 RASEFQ8IZ41 740 aa10.36□□□□□ -0.75
PTPRC-214ENST00000530727 TSPYL2Q9H2G4 693 aaPredicted RBP10.35□□□□□ -0.75
PTPRC-214ENST00000530727 ZRANB1Q9UGI0 708 aa10.34□□□□□ -0.75
PTPRC-214ENST00000530727 EVX2Q03828 476 aa10.34□□□□□ -0.75
PTPRC-214ENST00000530727 FAM212AQ96EL1 285 aa10.33□□□□□ -0.76
PTPRC-214ENST00000530727 DCAF8Q5TAQ9 597 aa10.3□□□□□ -0.76
PTPRC-214ENST00000530727 GSE1Q14687 1217 aa10.26□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms