RNA–Protein interactions for RNA: ENST00000391970.3

PTPRC-205, Transcript of protein tyrosine phosphatase, receptor type C, humanhuman

TSL 1 (best)

Gene PTPRC, Length 408 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRC-205ENST00000391970 AEBP2Q6ZN18 517 aaPredicted RBP14.27□□□□□ -0.13
PTPRC-205ENST00000391970 CHIC1Q5VXU3 224 aa14.08□□□□□ -0.16
PTPRC-205ENST00000391970 PHF23Q9BUL5 403 aaPredicted RBP12.41□□□□□ -0.42
PTPRC-205ENST00000391970 SENP3Q9H4L4 574 aaPredicted RBP12.05□□□□□ -0.48
PTPRC-205ENST00000391970 PLPPR3Q6T4P5 718 aa11.54□□□□□ -0.56
PTPRC-205ENST00000391970 FOXD1Q16676 465 aa11.27□□□□□ -0.61
PTPRC-205ENST00000391970 PPP6R1Q9UPN7 881 aa10.86□□□□□ -0.67
PTPRC-205ENST00000391970 ADRA2BP18089 450 aa10.85□□□□□ -0.67
PTPRC-205ENST00000391970 PIAS4Q8N2W9 510 aaPredicted RBP10.58□□□□□ -0.72
PTPRC-205ENST00000391970 MSH5O43196 834 aa10.36□□□□□ -0.75
PTPRC-205ENST00000391970 KCNA4P22459 653 aa10.28□□□□□ -0.76
PTPRC-205ENST00000391970 PPP4R3CPQ6ZMV5 832 aa10.2□□□□□ -0.78
PTPRC-205ENST00000391970 NCBP3Q53F19 620 aaKnown RBP10□□□□□ -0.81
PTPRC-205ENST00000391970 SCAF1Q9H7N4 1312 aaKnown RBP9.92□□□□□ -0.82
PTPRC-205ENST00000391970 NPM3O75607 178 aaKnown RBP9.88□□□□□ -0.83
PTPRC-205ENST00000391970 CNKSR2Q8WXI2 1034 aa9.86□□□□□ -0.83
PTPRC-205ENST00000391970 EHMT2Q96KQ7 1210 aa9.84□□□□□ -0.83
PTPRC-205ENST00000391970 SLC4A1APQ9BWU0 796 aaKnown RBP9.82□□□□□ -0.84
PTPRC-205ENST00000391970 MAPK8IP2Q13387 824 aaPredicted RBP9.81□□□□□ -0.84
PTPRC-205ENST00000391970 POTEDQ86YR6 584 aa9.78□□□□□ -0.84
PTPRC-205ENST00000391970 CSRNP3Q8WYN3 585 aa9.63□□□□□ -0.87
PTPRC-205ENST00000391970 RNF216Q9NWF9 866 aaPredicted RBP9.6□□□□□ -0.87
PTPRC-205ENST00000391970 DMRT2Q9Y5R5 561 aa9.6□□□□□ -0.87
PTPRC-205ENST00000391970 DNAJC5BQ9UF47 199 aa9.58□□□□□ -0.88
PTPRC-205ENST00000391970 HOXD11P31277 338 aaPredicted RBP9.51□□□□□ -0.89
PTPRC-205ENST00000391970 ZBTB22O15209 634 aa9.48□□□□□ -0.89
PTPRC-205ENST00000391970 FOXD4L1Q9NU39 408 aa9.39□□□□□ -0.91
PTPRC-205ENST00000391970 DCAF8L1A6NGE4 600 aa9.28□□□□□ -0.92
PTPRC-205ENST00000391970 SLC4A2P04920 1241 aa9.27□□□□□ -0.93
PTPRC-205ENST00000391970 MYCNP04198 464 aaPredicted RBP9.12□□□□□ -0.95
PTPRC-205ENST00000391970 ATXN8OSP0DMR3 200 aa9.03□□□□□ -0.96
PTPRC-205ENST00000391970 GRWD1Q9BQ67 446 aaKnown RBP eCLIP9.03□□□□□ -0.96
PTPRC-205ENST00000391970 U3KPZ7 1027 aaPredicted RBP8.94□□□□□ -0.98
PTPRC-205ENST00000391970 RNF39Q9H2S5 420 aa8.91□□□□□ -0.98
PTPRC-205ENST00000391970 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP8.9□□□□□ -0.98
PTPRC-205ENST00000391970 HNRNPUL2Q1KMD3 747 aaKnown RBP8.9□□□□□ -0.98
PTPRC-205ENST00000391970 SAMD1Q6SPF0 538 aaPredicted RBP8.89□□□□□ -0.99
PTPRC-205ENST00000391970 ATF5Q9Y2D1 282 aaPredicted RBP8.86□□□□□ -0.99
PTPRC-205ENST00000391970 CACNB1Q02641 598 aaPredicted RBP8.81□□□□□ -1
PTPRC-205ENST00000391970 C1QBPQ07021 282 aaKnown RBP8.75□□□□□ -1.01
PTPRC-205ENST00000391970 APLP2Q06481 763 aa8.74□□□□□ -1.01
PTPRC-205ENST00000391970 ZNF219Q9P2Y4 722 aaPredicted RBP8.68□□□□□ -1.02
PTPRC-205ENST00000391970 FKBP8Q14318 412 aa8.67□□□□□ -1.02
PTPRC-205ENST00000391970 SPINK5Q9NQ38 1064 aaPredicted RBP8.62□□□□□ -1.03
PTPRC-205ENST00000391970 CAPN15O75808 1086 aa8.56□□□□□ -1.04
PTPRC-205ENST00000391970 TRHP20396 242 aaPredicted RBP8.56□□□□□ -1.04
PTPRC-205ENST00000391970 MKRN4PQ13434 485 aaPredicted RBP8.5□□□□□ -1.05
PTPRC-205ENST00000391970 POLA2Q14181 598 aa8.49□□□□□ -1.05
PTPRC-205ENST00000391970 FBLN2P98095 1184 aa8.45□□□□□ -1.06
PTPRC-205ENST00000391970 ABCB7O75027 752 aa8.44□□□□□ -1.06
PTPRC-205ENST00000391970 DSG3P32926 999 aa8.43□□□□□ -1.06
PTPRC-205ENST00000391970 SPDYE4A6NLX3 237 aa8.41□□□□□ -1.06
PTPRC-205ENST00000391970 AMER1Q5JTC6 1135 aaPredicted RBP8.38□□□□□ -1.07
PTPRC-205ENST00000391970 ZBTB12Q9Y330 459 aaPredicted RBP8.38□□□□□ -1.07
PTPRC-205ENST00000391970 RTN4Q9NQC3 1192 aaKnown RBP8.37□□□□□ -1.07
PTPRC-205ENST00000391970 PROM2Q8N271 834 aa8.35□□□□□ -1.07
PTPRC-205ENST00000391970 FBXO3Q9UK99 471 aa8.29□□□□□ -1.08
PTPRC-205ENST00000391970 OSCARQ8IYS5 282 aa8.21□□□□□ -1.1
PTPRC-205ENST00000391970 SPDYE2BA6NHP3 402 aa8.18□□□□□ -1.1
PTPRC-205ENST00000391970 SPDYE6P0CI01 402 aa8.18□□□□□ -1.1
PTPRC-205ENST00000391970 VASPP50552 380 aaPredicted RBP8.18□□□□□ -1.1
PTPRC-205ENST00000391970 SPDYE2Q495Y8 402 aa8.18□□□□□ -1.1
PTPRC-205ENST00000391970 ZNF692Q9BU19 519 aaPredicted RBP8.17□□□□□ -1.1
PTPRC-205ENST00000391970 SSUH2Q9Y2M2 353 aa8.16□□□□□ -1.1
PTPRC-205ENST00000391970 IFNLR1Q8IU57 520 aaPredicted RBP8.09□□□□□ -1.11
PTPRC-205ENST00000391970 PABPN1Q86U42 306 aaKnown RBP eCLIP8.08□□□□□ -1.12
PTPRC-205ENST00000391970 STAG3Q9UJ98 1225 aa8.04□□□□□ -1.12
PTPRC-205ENST00000391970 SLC24A1O60721 1099 aa8□□□□□ -1.13
PTPRC-205ENST00000391970 RBM42Q9BTD8 480 aaKnown RBP7.98□□□□□ -1.13
PTPRC-205ENST00000391970 KLHL34Q8N239 644 aa7.95□□□□□ -1.14
PTPRC-205ENST00000391970 PLCD3Q8N3E9 789 aa7.95□□□□□ -1.14
PTPRC-205ENST00000391970 SPOCK2Q92563 424 aa7.94□□□□□ -1.14
PTPRC-205ENST00000391970 PKD2Q13563 968 aa7.93□□□□□ -1.14
PTPRC-205ENST00000391970 MIER1Q8N108 512 aa7.93□□□□□ -1.14
PTPRC-205ENST00000391970 AKT1S1Q96B36 256 aa7.91□□□□□ -1.14
PTPRC-205ENST00000391970 PLEKHG5O94827 1062 aa7.87□□□□□ -1.15
PTPRC-205ENST00000391970 SPDYE1Q8NFV5 336 aaPredicted RBP7.87□□□□□ -1.15
PTPRC-205ENST00000391970 ZBTB47Q9UFB7 747 aaPredicted RBP7.86□□□□□ -1.15
PTPRC-205ENST00000391970 REM2Q8IYK8 340 aaPredicted RBP7.84□□□□□ -1.15
PTPRC-205ENST00000391970 ECM2O94769 699 aaPredicted RBP7.81□□□□□ -1.16
PTPRC-205ENST00000391970 DCAF8L2P0C7V8 631 aa7.81□□□□□ -1.16
PTPRC-205ENST00000391970 CLEC11AQ9Y240 323 aa7.8□□□□□ -1.16
PTPRC-205ENST00000391970 PITPNM1O00562 1244 aa7.77□□□□□ -1.17
PTPRC-205ENST00000391970 PRR29P0C7W0 189 aa7.77□□□□□ -1.17
PTPRC-205ENST00000391970 CHRDL2Q6WN34 429 aa7.77□□□□□ -1.17
PTPRC-205ENST00000391970 CREBZFQ9NS37 354 aa7.76□□□□□ -1.17
PTPRC-205ENST00000391970 CIZ1Q9ULV3 898 aaPredicted RBP7.76□□□□□ -1.17
PTPRC-205ENST00000391970 PLCB2Q00722 1185 aa7.75□□□□□ -1.17
PTPRC-205ENST00000391970 RGL2O15211 777 aa7.74□□□□□ -1.17
PTPRC-205ENST00000391970 NUBP1P53384 320 aa7.73□□□□□ -1.17
PTPRC-205ENST00000391970 MNX1P50219 401 aaPredicted RBP7.72□□□□□ -1.17
PTPRC-205ENST00000391970 TRIM41Q8WV44 630 aa7.72□□□□□ -1.17
PTPRC-205ENST00000391970 GSE1Q14687 1217 aa7.7□□□□□ -1.18
PTPRC-205ENST00000391970 POTEHQ6S545 545 aa7.7□□□□□ -1.18
PTPRC-205ENST00000391970 NPM1P06748 294 aaKnown RBP eCLIP7.68□□□□□ -1.18
PTPRC-205ENST00000391970 PIP4P2Q8N4L2 257 aa7.66□□□□□ -1.18
PTPRC-205ENST00000391970 BBXQ8WY36 941 aaPredicted RBP7.66□□□□□ -1.18
PTPRC-205ENST00000391970 DCAF8Q5TAQ9 597 aa7.65□□□□□ -1.18
PTPRC-205ENST00000391970 FAM212AQ96EL1 285 aa7.65□□□□□ -1.18
PTPRC-205ENST00000391970 RASEFQ8IZ41 740 aa7.63□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 79.7 ms