Protein–RNA interactions for Protein: P08670

VIM, Vimentin, humanhuman

Known RBP Predictions only

Length 466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VIMP08670 OIP5-201ENST00000220514 1236 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
VIMP08670 COPS9-201ENST00000307266 759 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
VIMP08670 TRPT1-201ENST00000317459 962 ntAPPRIS P3 TSL 1 (best) BASIC18.48■□□□□ 0.55
VIMP08670 AUNIP-201ENST00000374298 2116 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
VIMP08670 GPR75-201ENST00000394705 2115 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
VIMP08670 AC079305.3-201ENST00000455416 218 ntTSL 5 BASIC18.48■□□□□ 0.55
VIMP08670 LINC01942-201ENST00000521373 513 ntTSL 4 BASIC18.48■□□□□ 0.55
VIMP08670 AC068385.1-201ENST00000533218 409 ntTSL 3 BASIC18.48■□□□□ 0.55
VIMP08670 IDH2-203ENST00000559482 1278 ntTSL 5 BASIC18.48■□□□□ 0.55
VIMP08670 DHRS4-207ENST00000559632 1003 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
VIMP08670 BEAN1-AS1-201ENST00000564618 533 ntTSL 4 BASIC18.48■□□□□ 0.55
VIMP08670 AIPL1-206ENST00000571740 1202 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.55
VIMP08670 NTF6G-201ENST00000591094 616 ntBASIC18.48■□□□□ 0.55
VIMP08670 MYO19-221ENST00000620640 1186 ntTSL 2 BASIC18.48■□□□□ 0.55
VIMP08670 RGN-204ENST00000457380 2041 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
VIMP08670 C8orf33-201ENST00000331434 2677 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
VIMP08670 SLC7A5-201ENST00000261622 4537 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
VIMP08670 OSR2-202ENST00000435298 1736 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
VIMP08670 EML3-201ENST00000278845 3017 ntAPPRIS ALT1 TSL 5 BASIC18.48■□□□□ 0.55
VIMP08670 STAT5A-201ENST00000345506 4301 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
VIMP08670 PRDM5-212ENST00000515109 2259 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
VIMP08670 NETO2-202ENST00000562435 7481 ntAPPRIS P3 TSL 1 (best) BASIC18.48■□□□□ 0.55
VIMP08670 SHISA6-202ENST00000409168 7262 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.55
VIMP08670 RABEPK-202ENST00000373538 1504 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
VIMP08670 EPHA10-201ENST00000319637 2050 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
VIMP08670 OTOP2-202ENST00000580223 2086 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
VIMP08670 SCAP-201ENST00000265565 4394 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
VIMP08670 AGBL5-202ENST00000360131 3177 ntAPPRIS P3 TSL 1 (best) BASIC18.48■□□□□ 0.55
VIMP08670 IGSF8-201ENST00000314485 2343 ntAPPRIS P2 TSL 1 (best) BASIC18.48■□□□□ 0.55
VIMP08670 GHR-201ENST00000230882 4560 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
VIMP08670 AC008894.3-201ENST00000624324 3103 ntBASIC18.47■□□□□ 0.55
VIMP08670 SNAPC4-201ENST00000298532 5010 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
VIMP08670 ANXA6-201ENST00000354546 2593 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
VIMP08670 AEBP1-206ENST00000450684 2571 ntTSL 2 BASIC18.47■□□□□ 0.55
VIMP08670 MIB2-202ENST00000378708 3012 ntAPPRIS ALT2 TSL 5 BASIC18.47■□□□□ 0.55
VIMP08670 LINC00921-202ENST00000573951 2468 ntTSL 2 BASIC18.47■□□□□ 0.55
VIMP08670 ELOVL7-205ENST00000508821 3994 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
VIMP08670 AP5S1-203ENST00000379573 1848 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
VIMP08670 FXYD6-204ENST00000526014 2171 ntAPPRIS P2 TSL 1 (best) BASIC18.47■□□□□ 0.55
VIMP08670 SERPINB6-204ENST00000380529 1370 ntAPPRIS P1 TSL 2 BASIC18.47■□□□□ 0.55
VIMP08670 ORAI3-204ENST00000566237 1393 ntTSL 5 BASIC18.47■□□□□ 0.55
VIMP08670 MROH1-202ENST00000423230 1712 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
VIMP08670 TULP1-208ENST00000614066 2084 ntAPPRIS ALT2 TSL 5 BASIC18.47■□□□□ 0.55
VIMP08670 BTBD11-205ENST00000490090 4614 ntTSL 2 BASIC18.47■□□□□ 0.55
VIMP08670 CITED1-201ENST00000246139 1231 ntAPPRIS P3 TSL 1 (best) BASIC18.47■□□□□ 0.55
VIMP08670 ATP5C1-202ENST00000356708 1163 ntAPPRIS ALT1 TSL 1 (best) BASIC18.47■□□□□ 0.55
VIMP08670 GADD45A-201ENST00000370985 803 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
VIMP08670 C5orf38-206ENST00000505778 509 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
VIMP08670 AC034102.6-201ENST00000550947 559 ntTSL 4 BASIC18.47■□□□□ 0.55
VIMP08670 LYRM1-205ENST00000562740 931 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
VIMP08670 ZNF688-205ENST00000563707 244 ntTSL 3 BASIC18.47■□□□□ 0.55
VIMP08670 FAM222B-213ENST00000583522 556 ntTSL 2 BASIC18.47■□□□□ 0.55
VIMP08670 ZNF561-AS1-205ENST00000588765 579 ntTSL 4 BASIC18.47■□□□□ 0.55
VIMP08670 AL121906.2-201ENST00000621597 723 ntBASIC18.47■□□□□ 0.55
VIMP08670 AC006557.6-201ENST00000623071 864 ntBASIC18.47■□□□□ 0.55
VIMP08670 AL365232.1-201ENST00000423730 1636 ntAPPRIS P1 TSL 5 BASIC18.47■□□□□ 0.55
VIMP08670 PML-211ENST00000564428 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
VIMP08670 AC027097.1-202ENST00000592201 1954 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
VIMP08670 AL138828.1-202ENST00000576956 1881 ntTSL 5 BASIC18.47■□□□□ 0.55
VIMP08670 PER3-203ENST00000377541 1524 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
VIMP08670 NTMT1-210ENST00000613644 1501 ntAPPRIS P1 TSL 3 BASIC18.47■□□□□ 0.55
VIMP08670 CHRNB2-201ENST00000368476 5867 ntAPPRIS P2 TSL 1 (best) BASIC18.47■□□□□ 0.55
VIMP08670 ZBTB5-201ENST00000307750 4627 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
VIMP08670 CCNO-201ENST00000282572 1433 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
VIMP08670 EIF2AK4-201ENST00000263791 5499 ntAPPRIS P1 TSL 2 BASIC18.47■□□□□ 0.55
VIMP08670 FBXO18-201ENST00000362091 3560 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
VIMP08670 VAV2-202ENST00000371851 5101 ntAPPRIS ALT2 TSL 5 BASIC18.47■□□□□ 0.55
VIMP08670 SLC29A2-206ENST00000546034 2509 ntAPPRIS P1 TSL 5 BASIC18.47■□□□□ 0.55
VIMP08670 A4GALT-202ENST00000381278 1935 ntAPPRIS P1 TSL 5 BASIC18.47■□□□□ 0.55
VIMP08670 FAM174B-201ENST00000327355 2792 ntAPPRIS P2 TSL 1 (best) BASIC18.47■□□□□ 0.55
VIMP08670 PEG3-206ENST00000598410 5304 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
VIMP08670 KCNE5-201ENST00000372101 1473 ntAPPRIS P1 BASIC18.46■□□□□ 0.55
VIMP08670 PRRT1-202ENST00000375150 1726 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
VIMP08670 HLA-DQB1-204ENST00000399084 1734 ntAPPRIS P1 BASIC18.46■□□□□ 0.55
VIMP08670 KRT8-201ENST00000293308 1882 ntAPPRIS P1 TSL 5 BASIC18.46■□□□□ 0.55
VIMP08670 SNX11-203ENST00000452859 1601 ntTSL 2 BASIC18.46■□□□□ 0.55
VIMP08670 TMEM189-UBE2V1-201ENST00000341698 2757 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
VIMP08670 STK4-201ENST00000372801 2038 ntTSL 2 BASIC18.46■□□□□ 0.55
VIMP08670 SPI1-201ENST00000227163 1168 ntAPPRIS ALT1 TSL 2 BASIC18.46■□□□□ 0.55
VIMP08670 GGT1-206ENST00000404223 952 ntTSL 2 BASIC18.46■□□□□ 0.55
VIMP08670 ZNF717-203ENST00000477374 1169 ntTSL 2 BASIC18.46■□□□□ 0.55
VIMP08670 AC016065.1-203ENST00000523225 1017 ntTSL 3 BASIC18.46■□□□□ 0.55
VIMP08670 ATOX1-207ENST00000524142 749 ntAPPRIS P1 TSL 5 BASIC18.46■□□□□ 0.55
VIMP08670 RRAS2-203ENST00000526063 970 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
VIMP08670 RRAS2-208ENST00000532814 982 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
VIMP08670 ISCU-212ENST00000547005 795 ntTSL 3 BASIC18.46■□□□□ 0.55
VIMP08670 GGTLC2-204ENST00000613850 973 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
VIMP08670 GGTLC2-205ENST00000618722 1047 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
VIMP08670 TSC22D1-AS1-201ENST00000616360 2845 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
VIMP08670 CPEB2-204ENST00000382401 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
VIMP08670 ZNF140-207ENST00000440550 1663 ntTSL 2 BASIC18.46■□□□□ 0.55
VIMP08670 CCS-208ENST00000533244 1430 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
VIMP08670 PRAG1-201ENST00000615670 4903 ntAPPRIS P1 TSL 5 BASIC18.46■□□□□ 0.55
VIMP08670 SH2D2A-201ENST00000368198 1599 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
VIMP08670 ACBD3-201ENST00000366812 3573 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
VIMP08670 RNASEH2C-203ENST00000528220 1337 ntTSL 2 BASIC18.46■□□□□ 0.55
VIMP08670 CLPB-212ENST00000543042 2133 ntTSL 2 BASIC18.46■□□□□ 0.55
VIMP08670 ARNTL2-208ENST00000544915 6785 ntAPPRIS ALT2 TSL 5 BASIC18.46■□□□□ 0.55
VIMP08670 SCAMP4-201ENST00000316097 2684 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.54
VIMP08670 PIP5K1A-207ENST00000441902 2297 ntTSL 2 BASIC18.46■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 45.8 ms