Protein–RNA interactions for Protein: P06400

RB1, Retinoblastoma-associated protein, humanhuman

Predictions only

Length 928 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RB1P06400 SUFU-201ENST00000369899 1839 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
RB1P06400 PIGU-202ENST00000374820 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
RB1P06400 ICAM4-202ENST00000380770 1211 ntAPPRIS P3 TSL 1 (best) BASIC19.4■□□□□ 0.7
RB1P06400 CSF3-203ENST00000394148 622 ntTSL 3 BASIC19.4■□□□□ 0.7
RB1P06400 LBH-204ENST00000406087 559 ntTSL 4 BASIC19.4■□□□□ 0.7
RB1P06400 MRPS24-203ENST00000418740 743 ntTSL 2 BASIC19.4■□□□□ 0.7
RB1P06400 UPF3AP3-201ENST00000420996 769 ntBASIC19.4■□□□□ 0.7
RB1P06400 CR559946.1-201ENST00000453835 531 ntTSL 4 BASIC19.4■□□□□ 0.7
RB1P06400 AP001107.6-201ENST00000526655 516 ntTSL 3 BASIC19.4■□□□□ 0.7
RB1P06400 MEN1-206ENST00000377321 2614 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
RB1P06400 SPNS1-203ENST00000334536 2027 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
RB1P06400 PSMC3IP-204ENST00000587209 1381 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
RB1P06400 HMOX2-208ENST00000570646 2147 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
RB1P06400 DIAPH1-203ENST00000389057 5762 ntAPPRIS ALT2 TSL 5 BASIC19.4■□□□□ 0.7
RB1P06400 AC062028.1-203ENST00000447433 1472 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
RB1P06400 DAPK2-205ENST00000558069 1473 ntTSL 5 BASIC19.4■□□□□ 0.7
RB1P06400 DOK3-201ENST00000312943 2292 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
RB1P06400 PAQR4-203ENST00000572687 2251 ntTSL 2 BASIC19.4■□□□□ 0.7
RB1P06400 DMAP1-201ENST00000315913 1552 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
RB1P06400 ARHGEF2-204ENST00000368315 1645 ntTSL 5 BASIC19.4■□□□□ 0.7
RB1P06400 ESR2-204ENST00000353772 2454 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
RB1P06400 GUCA1A-201ENST00000053469 1874 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
RB1P06400 DUT-202ENST00000455976 1935 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
RB1P06400 ZNF276-208ENST00000568064 2203 ntTSL 5 BASIC19.39■□□□□ 0.69
RB1P06400 MED15P5-201ENST00000423150 992 ntBASIC19.39■□□□□ 0.69
RB1P06400 MTCL1P1-201ENST00000446207 792 ntBASIC19.39■□□□□ 0.69
RB1P06400 SPCS2-202ENST00000526361 772 ntTSL 2 BASIC19.39■□□□□ 0.69
RB1P06400 AP005233.2-201ENST00000561588 372 ntTSL 3 BASIC19.39■□□□□ 0.69
RB1P06400 LINC01956-202ENST00000584273 612 ntTSL 3 BASIC19.39■□□□□ 0.69
RB1P06400 MKNK2-212ENST00000591588 631 ntTSL 2 BASIC19.39■□□□□ 0.69
RB1P06400 FAM71E1-202ENST00000595790 1225 ntAPPRIS P3 TSL 1 (best) BASIC19.39■□□□□ 0.69
RB1P06400 AC140113.2-201ENST00000604370 208 ntBASIC19.39■□□□□ 0.69
RB1P06400 KXD1-201ENST00000222307 1426 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
RB1P06400 WDR18-204ENST00000587001 1465 ntTSL 5 BASIC19.39■□□□□ 0.69
RB1P06400 PHOX2B-201ENST00000226382 3030 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
RB1P06400 SEPT4-201ENST00000317256 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
RB1P06400 HTD2-201ENST00000461393 1508 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
RB1P06400 DMD-208ENST00000378680 1858 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
RB1P06400 HMGA1-201ENST00000311487 1920 ntAPPRIS P4 TSL 1 (best) BASIC19.39■□□□□ 0.69
RB1P06400 TM9SF1-203ENST00000524835 1938 ntTSL 2 BASIC19.39■□□□□ 0.69
RB1P06400 TULP1-208ENST00000614066 2084 ntAPPRIS ALT2 TSL 5 BASIC19.39■□□□□ 0.69
RB1P06400 LINC01547-202ENST00000397841 2303 ntTSL 2 BASIC19.39■□□□□ 0.69
RB1P06400 DLX2-201ENST00000234198 2453 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
RB1P06400 CLK3-202ENST00000395066 2621 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
RB1P06400 CEBPA-201ENST00000498907 2631 ntAPPRIS P1 BASIC19.38■□□□□ 0.69
RB1P06400 GUCY1A3-210ENST00000513574 2656 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
RB1P06400 GALNT10-202ENST00000377661 3778 ntTSL 5 BASIC19.38■□□□□ 0.69
RB1P06400 FAM110A-201ENST00000246100 1619 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
RB1P06400 PRR23B-201ENST00000329447 1896 ntAPPRIS P1 BASIC19.38■□□□□ 0.69
RB1P06400 REEP4-202ENST00000334530 1476 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
RB1P06400 PODXL2-201ENST00000342480 2186 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
RB1P06400 PQLC2-201ENST00000375153 2153 ntAPPRIS P1 TSL 2 BASIC19.38■□□□□ 0.69
RB1P06400 NKX3-2-201ENST00000382438 2801 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
RB1P06400 MLST8-202ENST00000382450 1861 ntAPPRIS ALT1 TSL 2 BASIC19.38■□□□□ 0.69
RB1P06400 RBCK1-206ENST00000400247 790 ntTSL 2 BASIC19.38■□□□□ 0.69
RB1P06400 IMP4-203ENST00000409935 958 ntTSL 5 BASIC19.38■□□□□ 0.69
RB1P06400 CAMTA1-IT1-201ENST00000427317 365 ntTSL 3 BASIC19.38■□□□□ 0.69
RB1P06400 RPS2P1-201ENST00000434010 821 ntBASIC19.38■□□□□ 0.69
RB1P06400 AC125634.1-201ENST00000438758 1403 ntBASIC19.38■□□□□ 0.69
RB1P06400 SNX19-209ENST00000530356 1562 ntTSL 2 BASIC19.38■□□□□ 0.69
RB1P06400 OR7E14P-202ENST00000530490 1290 ntBASIC19.38■□□□□ 0.69
RB1P06400 SART3-203ENST00000546611 1184 ntBASIC19.38■□□□□ 0.69
RB1P06400 BLOC1S1-204ENST00000549147 1229 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
RB1P06400 AC015712.1-203ENST00000559331 593 ntTSL 3 BASIC19.38■□□□□ 0.69
RB1P06400 AC034105.1-201ENST00000563488 319 ntBASIC19.38■□□□□ 0.69
RB1P06400 MLST8-215ENST00000564088 1861 ntAPPRIS P3 TSL 2 BASIC19.38■□□□□ 0.69
RB1P06400 STX10-207ENST00000589083 1241 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
RB1P06400 AL356488.2-201ENST00000602755 427 ntBASIC19.38■□□□□ 0.69
RB1P06400 TAF15-215ENST00000605844 2191 ntAPPRIS P3 TSL 1 (best) BASIC19.38■□□□□ 0.69
RB1P06400 AC055717.3-201ENST00000622967 595 ntBASIC19.38■□□□□ 0.69
RB1P06400 AL356309.3-201ENST00000624132 1934 ntBASIC19.37■□□□□ 0.69
RB1P06400 MYBPH-201ENST00000255416 1805 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
RB1P06400 CASTOR1-202ENST00000407689 1623 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
RB1P06400 SCO1-203ENST00000577427 1601 ntTSL 3 BASIC19.37■□□□□ 0.69
RB1P06400 FLT1-209ENST00000639477 6337 ntTSL 5 BASIC19.37■□□□□ 0.69
RB1P06400 EBF4-202ENST00000380648 2910 ntAPPRIS P2 TSL 5 BASIC19.37■□□□□ 0.69
RB1P06400 FUOM-202ENST00000368551 628 ntTSL 3 BASIC19.37■□□□□ 0.69
RB1P06400 HNRNPA1P28-201ENST00000424481 961 ntBASIC19.37■□□□□ 0.69
RB1P06400 NT5C3B-215ENST00000521789 993 ntTSL 3 BASIC19.37■□□□□ 0.69
RB1P06400 AC010735.2-201ENST00000607970 584 ntTSL 4 BASIC19.37■□□□□ 0.69
RB1P06400 SENP5-204ENST00000445299 2491 ntTSL 2 BASIC19.37■□□□□ 0.69
RB1P06400 YTHDF3-213ENST00000621820 2363 ntTSL 2 BASIC19.37■□□□□ 0.69
RB1P06400 SLC4A4-201ENST00000264485 5852 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
RB1P06400 CAPZB-202ENST00000264203 2068 ntTSL 2 BASIC19.37■□□□□ 0.69
RB1P06400 ARHGEF4-202ENST00000355771 1872 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
RB1P06400 PALM-202ENST00000338448 2725 ntAPPRIS P4 TSL 1 (best) BASIC19.37■□□□□ 0.69
RB1P06400 HDAC4-201ENST00000345617 8976 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
RB1P06400 HDAC4-215ENST00000543185 8990 ntTSL 5 BASIC19.37■□□□□ 0.69
RB1P06400 CLN3-204ENST00000357857 1720 ntTSL 2 BASIC19.37■□□□□ 0.69
RB1P06400 BLACE-201ENST00000378120 2456 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
RB1P06400 KLC1-219ENST00000555836 2467 ntTSL 5 BASIC19.36■□□□□ 0.69
RB1P06400 PSRC1-202ENST00000369904 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
RB1P06400 GPANK1-201ENST00000375893 1598 ntAPPRIS P1 TSL 5 BASIC19.36■□□□□ 0.69
RB1P06400 TNFSF13-205ENST00000396545 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC19.36■□□□□ 0.69
RB1P06400 IRF7-207ENST00000525445 1588 ntTSL 5 BASIC19.36■□□□□ 0.69
RB1P06400 SAE1-203ENST00000413379 2313 ntTSL 2 BASIC19.36■□□□□ 0.69
RB1P06400 COL4A3BP-201ENST00000261415 2262 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
RB1P06400 TMED3-201ENST00000299705 1475 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
RB1P06400 CHRNG-201ENST00000389492 1398 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
RB1P06400 C8orf46-215ENST00000522977 1347 ntTSL 2 BASIC19.36■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 89 ms