Protein–RNA interactions for Protein: P06340

HLA-DOA, HLA class II histocompatibility antigen, DO alpha chain, humanhuman

Predictions only

Length 250 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DOAP06340 AC120498.9-201ENST00000339021 3867 ntBASIC21.64■■□□□ 1.05
HLA-DOAP06340 YY1AP1-213ENST00000405763 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC21.64■■□□□ 1.05
HLA-DOAP06340 PNOC-201ENST00000301908 1200 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
HLA-DOAP06340 MPIG6B-202ENST00000375805 668 ntAPPRIS ALT2 TSL 1 (best) BASIC21.64■■□□□ 1.05
HLA-DOAP06340 DYNLL1-203ENST00000392509 814 ntAPPRIS P1 TSL 3 BASIC21.64■■□□□ 1.05
HLA-DOAP06340 IGHV3-47-201ENST00000425060 335 ntBASIC21.64■■□□□ 1.05
HLA-DOAP06340 WDR88-203ENST00000592765 651 ntTSL 5 BASIC21.64■■□□□ 1.05
HLA-DOAP06340 FCGRT-210ENST00000596975 1054 ntTSL 5 BASIC21.64■■□□□ 1.05
HLA-DOAP06340 NDUFA6-204ENST00000617763 1183 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
HLA-DOAP06340 ANKRD20A8P-203ENST00000641373 517 ntBASIC21.64■■□□□ 1.05
HLA-DOAP06340 NKX2-1-202ENST00000498187 2338 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
HLA-DOAP06340 CLINT1-207ENST00000523908 2346 ntAPPRIS ALT1 TSL 1 (best) BASIC21.64■■□□□ 1.05
HLA-DOAP06340 ZDHHC3-205ENST00000424952 2687 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
HLA-DOAP06340 FOXN3-214ENST00000557258 2692 ntAPPRIS P3 TSL 1 (best) BASIC21.64■■□□□ 1.05
HLA-DOAP06340 MAPK9-203ENST00000393360 4326 ntTSL 5 BASIC21.64■■□□□ 1.05
HLA-DOAP06340 C6orf141-206ENST00000529246 1450 ntAPPRIS P1 BASIC21.64■■□□□ 1.05
HLA-DOAP06340 NECTIN3-206ENST00000485303 3664 ntAPPRIS P3 TSL 1 (best) BASIC21.64■■□□□ 1.05
HLA-DOAP06340 CACTIN-202ENST00000248420 2671 ntAPPRIS P1 TSL 5 BASIC21.63■■□□□ 1.05
HLA-DOAP06340 PHYKPL-201ENST00000308158 2038 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
HLA-DOAP06340 CAMKK1-202ENST00000348335 3563 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
HLA-DOAP06340 GTPBP8-208ENST00000619116 1378 ntTSL 5 BASIC21.63■■□□□ 1.05
HLA-DOAP06340 INSM1-201ENST00000310227 2829 ntAPPRIS P1 BASIC21.63■■□□□ 1.05
HLA-DOAP06340 CD55-201ENST00000314754 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC21.63■■□□□ 1.05
HLA-DOAP06340 PMEPA1-202ENST00000341744 4845 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
HLA-DOAP06340 AL499627.1-201ENST00000569373 2188 ntBASIC21.63■■□□□ 1.05
HLA-DOAP06340 LURAP1-201ENST00000371980 1854 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
HLA-DOAP06340 STX8-201ENST00000306357 1246 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
HLA-DOAP06340 SEC61G-203ENST00000415949 732 ntAPPRIS P1 TSL 5 BASIC21.63■■□□□ 1.05
HLA-DOAP06340 SLC2A1-204ENST00000460369 541 ntTSL 2 BASIC21.63■■□□□ 1.05
HLA-DOAP06340 RPP14-206ENST00000466547 805 ntAPPRIS P1 TSL 3 BASIC21.63■■□□□ 1.05
HLA-DOAP06340 AC012366.1-201ENST00000615411 473 ntTSL 5 BASIC21.63■■□□□ 1.05
HLA-DOAP06340 GDPD1-201ENST00000284116 1821 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
HLA-DOAP06340 HEXDC-203ENST00000577944 1820 ntTSL 5 BASIC21.63■■□□□ 1.05
HLA-DOAP06340 BCL7A-203ENST00000538010 6247 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
HLA-DOAP06340 OGFOD2-201ENST00000228922 1780 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
HLA-DOAP06340 CADPS2-201ENST00000313070 6065 ntTSL 5 BASIC21.63■■□□□ 1.05
HLA-DOAP06340 RIMKLB-202ENST00000357529 5830 ntAPPRIS P1 TSL 5 BASIC21.63■■□□□ 1.05
HLA-DOAP06340 GLT1D1-204ENST00000442111 2995 ntAPPRIS P1 TSL 5 BASIC21.63■■□□□ 1.05
HLA-DOAP06340 PRSS33-201ENST00000293851 1694 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
HLA-DOAP06340 LGI3-202ENST00000424267 3114 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
HLA-DOAP06340 NSUN5P1-202ENST00000421140 1535 ntBASIC21.62■■□□□ 1.05
HLA-DOAP06340 NSUN5P2-203ENST00000457352 1529 ntBASIC21.62■■□□□ 1.05
HLA-DOAP06340 SNCG-201ENST00000348795 684 ntTSL 2 BASIC21.62■■□□□ 1.05
HLA-DOAP06340 AC008610.1-201ENST00000504573 393 ntTSL 2 BASIC21.62■■□□□ 1.05
HLA-DOAP06340 COX6C-204ENST00000520271 571 ntAPPRIS P1 TSL 2 BASIC21.62■■□□□ 1.05
HLA-DOAP06340 CCDC61-201ENST00000536603 1282 ntAPPRIS ALT2 TSL 1 (best) BASIC21.62■■□□□ 1.05
HLA-DOAP06340 AC135586.2-201ENST00000537262 567 ntAPPRIS P1 TSL 4 BASIC21.62■■□□□ 1.05
HLA-DOAP06340 MROH1-202ENST00000423230 1712 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
HLA-DOAP06340 FIBCD1-201ENST00000372337 1868 ntTSL 5 BASIC21.62■■□□□ 1.05
HLA-DOAP06340 AL024508.2-201ENST00000607749 1894 ntBASIC21.62■■□□□ 1.05
HLA-DOAP06340 GLS-202ENST00000338435 4475 ntAPPRIS ALT1 TSL 1 (best) BASIC21.62■■□□□ 1.05
HLA-DOAP06340 GAS2L1-208ENST00000616432 2925 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
HLA-DOAP06340 GHDC-212ENST00000593209 1827 ntTSL 5 BASIC21.62■■□□□ 1.05
HLA-DOAP06340 AC008105.1-201ENST00000587534 2003 ntTSL 2 BASIC21.62■■□□□ 1.05
HLA-DOAP06340 CABP1-201ENST00000288616 1369 ntAPPRIS P4 TSL 1 (best) BASIC21.61■■□□□ 1.05
HLA-DOAP06340 IGF2-207ENST00000434045 1583 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
HLA-DOAP06340 RBM45-201ENST00000286070 1785 ntAPPRIS P2 TSL 1 (best) BASIC21.61■■□□□ 1.05
HLA-DOAP06340 LDHAL6A-202ENST00000396213 1716 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
HLA-DOAP06340 UBTD2-201ENST00000393792 3301 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
HLA-DOAP06340 CCDC134-201ENST00000255784 1270 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
HLA-DOAP06340 CMTM1-204ENST00000336328 606 ntAPPRIS ALT2 TSL 1 (best) BASIC21.61■■□□□ 1.05
HLA-DOAP06340 NPFFR2-202ENST00000344413 1234 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
HLA-DOAP06340 S100A3-201ENST00000368712 579 ntAPPRIS P1 TSL 3 BASIC21.61■■□□□ 1.05
HLA-DOAP06340 C1QC-203ENST00000374640 1163 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
HLA-DOAP06340 POLR2M-203ENST00000464277 910 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
HLA-DOAP06340 CMTM1-213ENST00000529506 581 ntAPPRIS ALT2 TSL 1 (best) BASIC21.61■■□□□ 1.05
HLA-DOAP06340 AP005901.3-202ENST00000581653 237 ntBASIC21.61■■□□□ 1.05
HLA-DOAP06340 KLK8-205ENST00000593490 267 ntTSL 3 BASIC21.61■■□□□ 1.05
HLA-DOAP06340 FAM129C-201ENST00000332386 2222 ntAPPRIS ALT2 TSL 1 (best) BASIC21.61■■□□□ 1.05
HLA-DOAP06340 ASL-205ENST00000395332 1622 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
HLA-DOAP06340 CRYL1-202ENST00000382812 1581 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
HLA-DOAP06340 UHRF1-203ENST00000615884 2651 ntAPPRIS P1 TSL 2 BASIC21.61■■□□□ 1.05
HLA-DOAP06340 HMGA1-201ENST00000311487 1920 ntAPPRIS P4 TSL 1 (best) BASIC21.61■■□□□ 1.05
HLA-DOAP06340 COL13A1-201ENST00000354547 3027 ntAPPRIS ALT2 TSL 5 BASIC21.61■■□□□ 1.05
HLA-DOAP06340 PRKCSH-209ENST00000589838 1898 ntAPPRIS P3 TSL 1 (best) BASIC21.6■■□□□ 1.05
HLA-DOAP06340 NBPF9-209ENST00000621645 5632 ntAPPRIS ALT2 TSL 2 BASIC21.6■■□□□ 1.05
HLA-DOAP06340 LYNX1-204ENST00000614491 4708 ntAPPRIS P1 TSL 2 BASIC21.6■■□□□ 1.05
HLA-DOAP06340 MEF2B-201ENST00000409224 1683 ntTSL 2 BASIC21.6■■□□□ 1.05
HLA-DOAP06340 RANBP10-201ENST00000317506 5341 ntAPPRIS P2 TSL 1 (best) BASIC21.6■■□□□ 1.05
HLA-DOAP06340 RANBP10-209ENST00000630626 5305 ntAPPRIS ALT2 TSL 5 BASIC21.6■■□□□ 1.05
HLA-DOAP06340 CDAN1-201ENST00000356231 4637 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
HLA-DOAP06340 LINC01356-201ENST00000401018 1819 ntTSL 2 BASIC21.6■■□□□ 1.05
HLA-DOAP06340 TPM1-203ENST00000317516 738 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
HLA-DOAP06340 TMEM234-202ENST00000344461 721 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
HLA-DOAP06340 HYI-201ENST00000372425 1265 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
HLA-DOAP06340 TSPY12P-201ENST00000421279 868 ntBASIC21.6■■□□□ 1.05
HLA-DOAP06340 MINOS1P3-201ENST00000457048 203 ntBASIC21.6■■□□□ 1.05
HLA-DOAP06340 AL611929.1-201ENST00000457340 449 ntTSL 3 BASIC21.6■■□□□ 1.05
HLA-DOAP06340 MIR3936HG-202ENST00000457998 733 ntTSL 2 BASIC21.6■■□□□ 1.05
HLA-DOAP06340 EMBP1-201ENST00000458200 901 ntBASIC21.6■■□□□ 1.05
HLA-DOAP06340 ENDOV-205ENST00000518644 625 ntTSL 4 BASIC21.6■■□□□ 1.05
HLA-DOAP06340 TPM1-218ENST00000559281 851 ntTSL 5 BASIC21.6■■□□□ 1.05
HLA-DOAP06340 BCL2L12-210ENST00000611631 1259 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
HLA-DOAP06340 ARFRP1-208ENST00000612256 2974 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
HLA-DOAP06340 YTHDC2-207ENST00000515883 2629 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
HLA-DOAP06340 CNOT6-201ENST00000261951 6176 ntAPPRIS P1 TSL 5 BASIC21.6■■□□□ 1.05
HLA-DOAP06340 ST3GAL4-217ENST00000534083 1919 ntAPPRIS ALT1 TSL 5 BASIC21.6■■□□□ 1.05
HLA-DOAP06340 DLG3-202ENST00000374355 5074 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
HLA-DOAP06340 GUCA1A-202ENST00000372958 1575 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
HLA-DOAP06340 SEPT8-216ENST00000620483 4335 ntTSL 5 BASIC21.6■■□□□ 1.05
Retrieved 100 of 98,524 protein–RNA pairs in 57.7 ms