Protein–RNA interactions for Protein: P01375

TNF, Tumor necrosis factor, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFP01375 PAQR4-204ENST00000574988 869 ntTSL 2 BASIC17.94■□□□□ 0.46
TNFP01375 H3F3B-206ENST00000587560 551 ntAPPRIS P1 TSL 2 BASIC17.94■□□□□ 0.46
TNFP01375 AL121772.3-201ENST00000610840 674 ntBASIC17.94■□□□□ 0.46
TNFP01375 APBB1-207ENST00000529519 1442 ntTSL 5 BASIC17.94■□□□□ 0.46
TNFP01375 TSPAN17-202ENST00000310032 2550 ntTSL 5 BASIC17.94■□□□□ 0.46
TNFP01375 MROH1-202ENST00000423230 1712 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
TNFP01375 YY1AP1-213ENST00000405763 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
TNFP01375 CCDC47-202ENST00000403162 2195 ntAPPRIS P1 TSL 2 BASIC17.94■□□□□ 0.46
TNFP01375 AGAP4-207ENST00000616763 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
TNFP01375 SLBP-201ENST00000318386 1635 ntAPPRIS ALT1 TSL 3 BASIC17.94■□□□□ 0.46
TNFP01375 HOXC10-201ENST00000303460 1936 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
TNFP01375 CDK2AP2-201ENST00000301488 1378 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
TNFP01375 AC233702.3-201ENST00000578656 1387 ntBASIC17.93■□□□□ 0.46
TNFP01375 GAS2L1-208ENST00000616432 2925 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
TNFP01375 ARFRP1-208ENST00000612256 2974 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
TNFP01375 AOC3-204ENST00000591562 2522 ntTSL 2 BASIC17.93■□□□□ 0.46
TNFP01375 SDHA-201ENST00000264932 2390 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
TNFP01375 CD320-201ENST00000301458 1250 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
TNFP01375 KRTAP5-6-201ENST00000382160 561 ntAPPRIS P1 BASIC17.93■□□□□ 0.46
TNFP01375 UBE2J2-205ENST00000400930 1021 ntTSL 5 BASIC17.93■□□□□ 0.46
TNFP01375 AC093585.1-201ENST00000425183 428 ntTSL 2 BASIC17.93■□□□□ 0.46
TNFP01375 AC074051.2-201ENST00000565115 352 ntBASIC17.93■□□□□ 0.46
TNFP01375 LAT-211ENST00000566177 786 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.46
TNFP01375 AC011840.4-201ENST00000578471 627 ntBASIC17.93■□□□□ 0.46
TNFP01375 PHF20L1-209ENST00000395386 6237 ntAPPRIS P1 TSL 5 BASIC17.93■□□□□ 0.46
TNFP01375 ANKRD9-201ENST00000286918 6727 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
TNFP01375 ANKRD16-203ENST00000380094 2738 ntAPPRIS P1 TSL 2 BASIC17.93■□□□□ 0.46
TNFP01375 GRK2-201ENST00000308595 3466 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
TNFP01375 RAX-202ENST00000334889 3197 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
TNFP01375 LRP1-204ENST00000553277 1693 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
TNFP01375 SDHAP2-201ENST00000455183 2001 ntBASIC17.93■□□□□ 0.46
TNFP01375 PDE4DIP-214ENST00000479408 2746 ntTSL 5 BASIC17.92■□□□□ 0.46
TNFP01375 JMJD4-202ENST00000438896 2502 ntTSL 2 BASIC17.92■□□□□ 0.46
TNFP01375 AP2S1-202ENST00000352203 793 ntTSL 2 BASIC17.92■□□□□ 0.46
TNFP01375 FAM239B-201ENST00000381106 1099 ntTSL 2 BASIC17.92■□□□□ 0.46
TNFP01375 RPL8-202ENST00000394920 965 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
TNFP01375 GNB1L-203ENST00000405009 1076 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
TNFP01375 LEF1-AS1-201ENST00000436413 1045 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
TNFP01375 AC113404.2-201ENST00000507884 177 ntBASIC17.92■□□□□ 0.46
TNFP01375 AC105202.1-201ENST00000517833 995 ntTSL 3 BASIC17.92■□□□□ 0.46
TNFP01375 FOXP3-205ENST00000518685 1213 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
TNFP01375 VEGFA-222ENST00000520948 1199 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
TNFP01375 RPL28-210ENST00000560583 1204 ntTSL 2 BASIC17.92■□□□□ 0.46
TNFP01375 TRAF7-205ENST00000567653 666 ntTSL 2 BASIC17.92■□□□□ 0.46
TNFP01375 ANAPC11-204ENST00000571024 668 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
TNFP01375 ANAPC11-218ENST00000582222 523 ntTSL 2 BASIC17.92■□□□□ 0.46
TNFP01375 SRSF1-209ENST00000585096 568 ntTSL 4 BASIC17.92■□□□□ 0.46
TNFP01375 C19orf25-204ENST00000586564 1265 ntAPPRIS P1 TSL 3 BASIC17.92■□□□□ 0.46
TNFP01375 AP2S1-204ENST00000597020 707 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
TNFP01375 CYP1B1-AS1-214ENST00000620177 554 ntTSL 4 BASIC17.92■□□□□ 0.46
TNFP01375 Metazoa_SRP.104-201ENST00000622099 280 ntBASIC17.92■□□□□ 0.46
TNFP01375 PTENP1-AS-201ENST00000627688 873 ntTSL 5 BASIC17.92■□□□□ 0.46
TNFP01375 LINC01714-202ENST00000635451 896 ntTSL 5 BASIC17.92■□□□□ 0.46
TNFP01375 IFNLR1-205ENST00000374421 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC17.92■□□□□ 0.46
TNFP01375 GPR162-201ENST00000311268 2768 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
TNFP01375 PRSS33-201ENST00000293851 1694 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
TNFP01375 RNPS1-219ENST00000566397 1685 ntTSL 2 BASIC17.92■□□□□ 0.46
TNFP01375 RHOV-201ENST00000220507 1705 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
TNFP01375 DLK1-202ENST00000341267 4722 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
TNFP01375 USP21-201ENST00000289865 2195 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
TNFP01375 TNFSF11-203ENST00000398795 2199 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
TNFP01375 SHROOM1-202ENST00000378676 2352 ntAPPRIS ALT2 TSL 5 BASIC17.91■□□□□ 0.46
TNFP01375 PCSK6-214ENST00000611716 4409 ntAPPRIS P4 TSL 1 (best) BASIC17.91■□□□□ 0.46
TNFP01375 BMP1-202ENST00000306385 4229 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
TNFP01375 INSM1-201ENST00000310227 2829 ntAPPRIS P1 BASIC17.91■□□□□ 0.46
TNFP01375 KLC1-217ENST00000554280 2426 ntTSL 5 BASIC17.91■□□□□ 0.46
TNFP01375 GPR35-201ENST00000319838 2249 ntAPPRIS P3 TSL 2 BASIC17.91■□□□□ 0.46
TNFP01375 ARHGEF18-202ENST00000359920 5733 ntAPPRIS ALT2 TSL 2 BASIC17.91■□□□□ 0.46
TNFP01375 AC044802.1-201ENST00000501143 2894 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
TNFP01375 THAP3-203ENST00000377627 2053 ntAPPRIS P3 TSL 2 BASIC17.91■□□□□ 0.46
TNFP01375 VSTM2A-203ENST00000404951 2521 ntTSL 5 BASIC17.91■□□□□ 0.46
TNFP01375 ARMC9-201ENST00000349938 2300 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
TNFP01375 FAM171A2-201ENST00000293443 3160 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
TNFP01375 INSL3-201ENST00000317306 755 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
TNFP01375 PITX2-203ENST00000355080 2100 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
TNFP01375 NFIB-201ENST00000380921 1274 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
TNFP01375 SUMF2-203ENST00000395435 1287 ntTSL 2 BASIC17.91■□□□□ 0.46
TNFP01375 DDT-202ENST00000398344 713 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
TNFP01375 DDT-203ENST00000403754 569 ntTSL 3 BASIC17.91■□□□□ 0.46
TNFP01375 KRTCAP3-202ENST00000407293 942 ntTSL 2 BASIC17.91■□□□□ 0.46
TNFP01375 ITM2C-204ENST00000409704 1106 ntTSL 5 BASIC17.91■□□□□ 0.46
TNFP01375 AL645608.6-201ENST00000418300 402 ntTSL 3 BASIC17.91■□□□□ 0.46
TNFP01375 AKR7L-201ENST00000420396 1240 ntAPPRIS ALT2 TSL 5 BASIC17.91■□□□□ 0.46
TNFP01375 DDT-206ENST00000430101 573 ntTSL 2 BASIC17.91■□□□□ 0.46
TNFP01375 KRT17P6-201ENST00000453795 1220 ntBASIC17.91■□□□□ 0.46
TNFP01375 PDCD6-207ENST00000509581 1156 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
TNFP01375 AC091304.2-201ENST00000564639 760 ntBASIC17.91■□□□□ 0.46
TNFP01375 LINC01711-201ENST00000598340 967 ntBASIC17.91■□□□□ 0.46
TNFP01375 GXYLT1P4-201ENST00000613576 1192 ntBASIC17.91■□□□□ 0.46
TNFP01375 CTBP2-214ENST00000531469 1918 ntAPPRIS P1 TSL 2 BASIC17.91■□□□□ 0.46
TNFP01375 TMEM128-201ENST00000254742 1737 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
TNFP01375 AL499627.1-201ENST00000569373 2188 ntBASIC17.91■□□□□ 0.46
TNFP01375 SRP68-201ENST00000307877 2649 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
TNFP01375 PAXIP1-202ENST00000404141 3827 ntAPPRIS P1 TSL 5 BASIC17.91■□□□□ 0.46
TNFP01375 MXD3-202ENST00000427908 2269 ntTSL 2 BASIC17.91■□□□□ 0.46
TNFP01375 GHDC-212ENST00000593209 1827 ntTSL 5 BASIC17.91■□□□□ 0.46
TNFP01375 SHF-201ENST00000290894 2500 ntAPPRIS P3 TSL 2 BASIC17.91■□□□□ 0.46
TNFP01375 SLC6A11-202ENST00000454147 2794 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
TNFP01375 MRPL4-203ENST00000393733 1620 ntTSL 5 BASIC17.9■□□□□ 0.46
TNFP01375 EGLN2-201ENST00000303961 2102 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 17.1 ms