Protein–RNA interactions for Protein: O43248

HOXC11, Homeobox protein Hox-C11, humanhuman

Predicted RBP Predictions only

Length 304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC11O43248 TPM1-218ENST00000559281 851 ntTSL 5 BASIC18.7■□□□□ 0.58
HOXC11O43248 AC007220.1-201ENST00000572466 1055 ntTSL 3 BASIC18.7■□□□□ 0.58
HOXC11O43248 KLK8-205ENST00000593490 267 ntTSL 3 BASIC18.7■□□□□ 0.58
HOXC11O43248 LETM1P2-201ENST00000597330 2178 ntBASIC18.7■□□□□ 0.58
HOXC11O43248 AL024508.2-201ENST00000607749 1894 ntBASIC18.7■□□□□ 0.58
HOXC11O43248 REEP2-201ENST00000254901 2099 ntAPPRIS P3 TSL 1 (best) BASIC18.7■□□□□ 0.58
HOXC11O43248 SLC35B2-207ENST00000619636 2063 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
HOXC11O43248 MEN1-208ENST00000394374 3155 ntAPPRIS P3 TSL 5 BASIC18.7■□□□□ 0.58
HOXC11O43248 KLHDC2-201ENST00000298307 5514 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
HOXC11O43248 CDKN2C-201ENST00000262662 2904 ntAPPRIS P1 TSL 2 BASIC18.7■□□□□ 0.58
HOXC11O43248 RNPS1-219ENST00000566397 1685 ntTSL 2 BASIC18.69■□□□□ 0.58
HOXC11O43248 ZNF787-202ENST00000587279 1657 ntTSL 2 BASIC18.69■□□□□ 0.58
HOXC11O43248 METRN-204ENST00000568223 3325 ntAPPRIS P2 TSL 1 (best) BASIC18.69■□□□□ 0.58
HOXC11O43248 RGS11-204ENST00000397770 2390 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
HOXC11O43248 MFSD1-219ENST00000622669 2361 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
HOXC11O43248 RGS3-202ENST00000342620 1714 ntTSL 5 BASIC18.69■□□□□ 0.58
HOXC11O43248 PRPS1-203ENST00000372428 1748 ntTSL 2 BASIC18.69■□□□□ 0.58
HOXC11O43248 ARPC1B-201ENST00000252725 1551 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
HOXC11O43248 PDCD10-201ENST00000392750 2067 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
HOXC11O43248 DOK1-201ENST00000233668 2555 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
HOXC11O43248 MAP4K4-210ENST00000425019 4403 ntTSL 5 BASIC18.69■□□□□ 0.58
HOXC11O43248 NEIL3-201ENST00000264596 2408 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
HOXC11O43248 KRT8P10-201ENST00000450021 1447 ntBASIC18.69■□□□□ 0.58
HOXC11O43248 ATP5J-201ENST00000284971 614 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
HOXC11O43248 ANKRD37-201ENST00000335174 1141 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
HOXC11O43248 AL591212.1-201ENST00000433646 615 ntTSL 5 BASIC18.69■□□□□ 0.58
HOXC11O43248 LINC00595-207ENST00000476909 792 ntTSL 2 BASIC18.69■□□□□ 0.58
HOXC11O43248 AP003555.3-201ENST00000534086 432 ntTSL 4 BASIC18.69■□□□□ 0.58
HOXC11O43248 AP001453.1-201ENST00000534988 923 ntTSL 3 BASIC18.69■□□□□ 0.58
HOXC11O43248 CCDC61-201ENST00000536603 1282 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
HOXC11O43248 PLAUR-214ENST00000601723 1205 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
HOXC11O43248 CCNC-219ENST00000627680 896 ntTSL 5 BASIC18.69■□□□□ 0.58
HOXC11O43248 SEMA3D-202ENST00000444867 1605 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
HOXC11O43248 CCNL2-201ENST00000400809 2305 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
HOXC11O43248 SBNO2-201ENST00000361757 4923 ntAPPRIS P4 TSL 1 (best) BASIC18.69■□□□□ 0.58
HOXC11O43248 PSMD11-202ENST00000457654 2159 ntAPPRIS P1 TSL 2 BASIC18.69■□□□□ 0.58
HOXC11O43248 OGFOD3-202ENST00000329197 1652 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
HOXC11O43248 CELF6-204ENST00000543764 1676 ntTSL 2 BASIC18.69■□□□□ 0.58
HOXC11O43248 STARD10-218ENST00000543304 1513 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
HOXC11O43248 ZNF331-214ENST00000511154 2120 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
HOXC11O43248 SEPT6-202ENST00000354228 1576 ntAPPRIS P4 TSL 1 (best) BASIC18.68■□□□□ 0.58
HOXC11O43248 IGF2-207ENST00000434045 1583 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
HOXC11O43248 ADAP1-216ENST00000539900 2178 ntTSL 2 BASIC18.68■□□□□ 0.58
HOXC11O43248 PHYKPL-201ENST00000308158 2038 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
HOXC11O43248 YY1AP1-213ENST00000405763 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
HOXC11O43248 HYI-201ENST00000372425 1265 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
HOXC11O43248 MRPS15-201ENST00000373116 1006 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
HOXC11O43248 ARMC12-202ENST00000373866 1254 ntAPPRIS P1 TSL 3 BASIC18.68■□□□□ 0.58
HOXC11O43248 SDR39U1-201ENST00000399395 1233 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
HOXC11O43248 MRPL28-203ENST00000429738 310 ntTSL 2 BASIC18.68■□□□□ 0.58
HOXC11O43248 AL611929.1-201ENST00000457340 449 ntTSL 3 BASIC18.68■□□□□ 0.58
HOXC11O43248 MIR3936HG-202ENST00000457998 733 ntTSL 2 BASIC18.68■□□□□ 0.58
HOXC11O43248 MAPK8IP1-201ENST00000241014 3050 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
HOXC11O43248 CHRNB1-201ENST00000306071 2557 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
HOXC11O43248 CDC42BPB-201ENST00000361246 6758 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
HOXC11O43248 MTERF2-202ENST00000392830 1763 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
HOXC11O43248 VEGFA-206ENST00000372077 2834 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
HOXC11O43248 CRYL1-202ENST00000382812 1581 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
HOXC11O43248 MSC-201ENST00000325509 2023 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
HOXC11O43248 TNFAIP2-209ENST00000560869 4683 ntAPPRIS P1 TSL 5 BASIC18.67■□□□□ 0.58
HOXC11O43248 ZNF324B-202ENST00000545523 2368 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
HOXC11O43248 SNCG-201ENST00000348795 684 ntTSL 2 BASIC18.67■□□□□ 0.58
HOXC11O43248 TBC1D7-202ENST00000356436 1116 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
HOXC11O43248 CD1E-203ENST00000368156 861 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
HOXC11O43248 TBC1D7-204ENST00000379300 1276 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
HOXC11O43248 CDKN1C-201ENST00000380725 1220 ntAPPRIS ALT2 TSL 2 BASIC18.67■□□□□ 0.58
HOXC11O43248 CYCS-202ENST00000409409 974 ntAPPRIS P1 TSL 3 BASIC18.67■□□□□ 0.58
HOXC11O43248 KRT16P4-201ENST00000453883 522 ntBASIC18.67■□□□□ 0.58
HOXC11O43248 RBM14-RBM4-203ENST00000500635 829 ntTSL 2 BASIC18.67■□□□□ 0.58
HOXC11O43248 ENDOV-205ENST00000518644 625 ntTSL 4 BASIC18.67■□□□□ 0.58
HOXC11O43248 AC104692.2-201ENST00000603054 253 ntBASIC18.67■□□□□ 0.58
HOXC11O43248 AL162497.1-201ENST00000615635 518 ntTSL 4 BASIC18.67■□□□□ 0.58
HOXC11O43248 AL031008.1-201ENST00000619963 541 ntBASIC18.67■□□□□ 0.58
HOXC11O43248 MAP2K3-215ENST00000627447 351 ntTSL 5 BASIC18.67■□□□□ 0.58
HOXC11O43248 RCCD1-201ENST00000394258 2689 ntAPPRIS P2 TSL 1 (best) BASIC18.67■□□□□ 0.58
HOXC11O43248 SAMD11-211ENST00000616125 2230 ntAPPRIS ALT2 TSL 5 BASIC18.67■□□□□ 0.58
HOXC11O43248 NGLY1-202ENST00000280700 2473 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
HOXC11O43248 GUCA1A-202ENST00000372958 1575 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
HOXC11O43248 GHDC-212ENST00000593209 1827 ntTSL 5 BASIC18.67■□□□□ 0.58
HOXC11O43248 CSF3-206ENST00000577675 1360 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
HOXC11O43248 PRSS33-201ENST00000293851 1694 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
HOXC11O43248 HOXB9-201ENST00000311177 2581 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
HOXC11O43248 NARF-204ENST00000390006 1766 ntTSL 2 BASIC18.66■□□□□ 0.58
HOXC11O43248 INPP5J-203ENST00000401755 1751 ntTSL 2 BASIC18.66■□□□□ 0.58
HOXC11O43248 CCNA1-202ENST00000440264 1758 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
HOXC11O43248 ZNF692-204ENST00000451251 2065 ntAPPRIS ALT2 TSL 2 BASIC18.66■□□□□ 0.58
HOXC11O43248 TSR2-201ENST00000375151 1534 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
HOXC11O43248 SET-201ENST00000322030 2915 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
HOXC11O43248 PRMT2-201ENST00000291705 1011 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
HOXC11O43248 AC008610.1-201ENST00000504573 393 ntTSL 2 BASIC18.66■□□□□ 0.58
HOXC11O43248 FXYD6-211ENST00000539526 2132 ntAPPRIS P2 TSL 1 (best) BASIC18.66■□□□□ 0.58
HOXC11O43248 TSFM-208ENST00000543727 651 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
HOXC11O43248 BMF-207ENST00000559701 630 ntTSL 3 BASIC18.66■□□□□ 0.58
HOXC11O43248 HDDC3-205ENST00000559898 1024 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
HOXC11O43248 CARHSP1-205ENST00000562843 843 ntTSL 2 BASIC18.66■□□□□ 0.58
HOXC11O43248 ZNF385B-204ENST00000410066 3288 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
HOXC11O43248 SLC12A5-210ENST00000616202 2445 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
HOXC11O43248 LURAP1-201ENST00000371980 1854 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
HOXC11O43248 FIBCD1-201ENST00000372337 1868 ntTSL 5 BASIC18.66■□□□□ 0.58
HOXC11O43248 AC016757.1-205ENST00000470346 1888 ntTSL 2 BASIC18.66■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 31.6 ms