Protein–RNA interactions for Protein: O14646

CHD1, Chromodomain-helicase-DNA-binding protein 1, humanhuman

Predictions only

Length 1,710 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD1O14646 PUF60-203ENST00000453551 1842 ntTSL 1 (best) BASIC29.64■■■□□ 2.33
CHD1O14646 CUEDC1-202ENST00000407144 2190 ntAPPRIS P1 TSL 5 BASIC29.63■■■□□ 2.33
CHD1O14646 LSM14A-202ENST00000540746 2152 ntTSL 2 BASIC29.63■■■□□ 2.33
CHD1O14646 GOSR2-201ENST00000225567 1245 ntTSL 1 (best) BASIC29.63■■■□□ 2.33
CHD1O14646 PSMG3-201ENST00000252329 1007 ntAPPRIS P1 TSL 3 BASIC29.63■■■□□ 2.33
CHD1O14646 B4GALT1-AS1-202ENST00000442432 843 ntTSL 2 BASIC29.63■■■□□ 2.33
CHD1O14646 METTL23-203ENST00000586738 1059 ntTSL 5 BASIC29.63■■■□□ 2.33
CHD1O14646 METTL23-205ENST00000588302 925 ntTSL 5 BASIC29.63■■■□□ 2.33
CHD1O14646 NPAS3-206ENST00000548645 2926 ntAPPRIS ALT2 TSL 1 (best) BASIC29.63■■■□□ 2.33
CHD1O14646 AL163051.1-201ENST00000569214 1512 ntBASIC29.63■■■□□ 2.33
CHD1O14646 B4GALT2-201ENST00000309519 2004 ntTSL 2 BASIC29.63■■■□□ 2.33
CHD1O14646 LYPD3-201ENST00000244333 1694 ntAPPRIS P1 TSL 1 (best) BASIC29.63■■■□□ 2.33
CHD1O14646 COPS8-202ENST00000392008 1654 ntTSL 2 BASIC29.63■■■□□ 2.33
CHD1O14646 ELMOD1-202ENST00000443271 1990 ntAPPRIS P1 TSL 2 BASIC29.63■■■□□ 2.33
CHD1O14646 P2RY6-203ENST00000393591 1829 ntAPPRIS P1 TSL 1 (best) BASIC29.62■■■□□ 2.33
CHD1O14646 CLTA-201ENST00000242285 1152 ntAPPRIS P4 TSL 1 (best) BASIC29.62■■■□□ 2.33
CHD1O14646 CLTA-203ENST00000396603 1090 ntTSL 1 (best) BASIC29.62■■■□□ 2.33
CHD1O14646 TAF8-206ENST00000472818 719 ntTSL 2 BASIC29.62■■■□□ 2.33
CHD1O14646 NDUFA6-202ENST00000498737 1256 ntTSL 1 (best) BASIC29.62■■■□□ 2.33
CHD1O14646 NDUFA6-203ENST00000602404 1080 ntAPPRIS P1 TSL 1 (best) BASIC29.62■■■□□ 2.33
CHD1O14646 AP000867.4-201ENST00000641616 219 ntBASIC29.62■■■□□ 2.33
CHD1O14646 INPP5J-204ENST00000402238 1564 ntTSL 2 BASIC29.62■■■□□ 2.33
CHD1O14646 SLC4A1APP2-201ENST00000424054 1259 ntBASIC29.62■■■□□ 2.33
CHD1O14646 AC008127.1-201ENST00000548424 499 ntTSL 5 BASIC29.62■■■□□ 2.33
CHD1O14646 AL391261.2-201ENST00000554907 773 ntTSL 2 BASIC29.62■■■□□ 2.33
CHD1O14646 AC010618.3-201ENST00000596643 775 ntTSL 3 BASIC29.62■■■□□ 2.33
CHD1O14646 AL590999.1-203ENST00000606829 542 ntTSL 4 BASIC29.62■■■□□ 2.33
CHD1O14646 SLC35D3-201ENST00000331858 2359 ntAPPRIS P1 TSL 1 (best) BASIC29.62■■■□□ 2.33
CHD1O14646 PNRC1-202ENST00000354922 1345 ntTSL 1 (best) BASIC29.62■■■□□ 2.33
CHD1O14646 ST3GAL3-219ENST00000372374 2170 ntTSL 5 BASIC29.61■■■□□ 2.33
CHD1O14646 SEH1L-202ENST00000399892 1846 ntTSL 1 (best) BASIC29.61■■■□□ 2.33
CHD1O14646 FAM129C-211ENST00000600871 1822 ntAPPRIS ALT2 TSL 5 BASIC29.61■■■□□ 2.33
CHD1O14646 TWIST2-202ENST00000612363 1404 ntAPPRIS P1 TSL 1 (best) BASIC29.61■■■□□ 2.33
CHD1O14646 ZNF420-201ENST00000304239 1945 ntTSL 2 BASIC29.61■■■□□ 2.33
CHD1O14646 AC099778.1-201ENST00000568593 1911 ntBASIC29.61■■■□□ 2.33
CHD1O14646 TBC1D10A-204ENST00000403477 1950 ntAPPRIS ALT2 TSL 2 BASIC29.61■■■□□ 2.33
CHD1O14646 ZNF331-202ENST00000411977 2248 ntAPPRIS P1 TSL 1 (best) BASIC29.61■■■□□ 2.33
CHD1O14646 GYG2P1-204ENST00000382966 639 ntTSL 3 BASIC29.61■■■□□ 2.33
CHD1O14646 PIK3CD-AS2-201ENST00000415330 939 ntTSL 5 BASIC29.61■■■□□ 2.33
CHD1O14646 SIGLEC30P-201ENST00000455569 941 ntBASIC29.61■■■□□ 2.33
CHD1O14646 LINC01336-202ENST00000506086 479 ntTSL 5 BASIC29.61■■■□□ 2.33
CHD1O14646 AC109322.1-201ENST00000524499 1264 ntBASIC29.61■■■□□ 2.33
CHD1O14646 AC010507.1-201ENST00000633895 436 ntBASIC29.61■■■□□ 2.33
CHD1O14646 UBQLN4P1-201ENST00000461599 1801 ntBASIC29.61■■■□□ 2.33
CHD1O14646 WNT9B-201ENST00000290015 1376 ntAPPRIS P1 TSL 1 (best) BASIC29.61■■■□□ 2.33
CHD1O14646 TH-206ENST00000381178 1910 ntTSL 1 (best) BASIC29.61■■■□□ 2.33
CHD1O14646 SLC3A2-202ENST00000377889 1993 ntAPPRIS P1 TSL 1 (best) BASIC29.61■■■□□ 2.33
CHD1O14646 CYP1B1-207ENST00000614273 2174 ntAPPRIS P1 TSL 5 BASIC29.61■■■□□ 2.33
CHD1O14646 DALRD3-205ENST00000440857 2014 ntTSL 1 (best) BASIC29.6■■■□□ 2.33
CHD1O14646 OPN1LW-201ENST00000369951 1261 ntAPPRIS P1 TSL 1 (best) BASIC29.6■■■□□ 2.33
CHD1O14646 MEIS3P1-201ENST00000495167 958 ntBASIC29.6■■■□□ 2.33
CHD1O14646 AC069262.1-201ENST00000539058 672 ntBASIC29.6■■■□□ 2.33
CHD1O14646 AL359644.1-202ENST00000637541 571 ntTSL 3 BASIC29.6■■■□□ 2.33
CHD1O14646 AL022326.1-202ENST00000641533 845 ntBASIC29.6■■■□□ 2.33
CHD1O14646 SP7-203ENST00000537210 1472 ntTSL 1 (best) BASIC29.6■■■□□ 2.33
CHD1O14646 KIF25-202ENST00000354419 1510 ntAPPRIS P1 TSL 1 (best) BASIC29.6■■■□□ 2.33
CHD1O14646 SHD-201ENST00000543264 2577 ntAPPRIS P1 TSL 1 (best) BASIC29.6■■■□□ 2.33
CHD1O14646 ACOT7-202ENST00000377842 1813 ntAPPRIS ALT2 TSL 1 (best) BASIC29.6■■■□□ 2.33
CHD1O14646 SLC39A4-202ENST00000301305 2174 ntAPPRIS P1 TSL 1 (best) BASIC29.6■■■□□ 2.33
CHD1O14646 GRM6-202ENST00000517717 2673 ntAPPRIS P1 TSL 5 BASIC29.6■■■□□ 2.33
CHD1O14646 SIVA1-202ENST00000347067 550 ntTSL 1 (best) BASIC29.59■■■□□ 2.33
CHD1O14646 LINC01264-201ENST00000431395 500 ntTSL 3 BASIC29.59■■■□□ 2.33
CHD1O14646 MRVI1-AS1-203ENST00000529979 784 ntTSL 3 BASIC29.59■■■□□ 2.33
CHD1O14646 FSTL3-207ENST00000605925 748 ntTSL 4 BASIC29.59■■■□□ 2.33
CHD1O14646 SIGLEC16-201ENST00000599858 1437 ntBASIC29.59■■■□□ 2.33
CHD1O14646 NFE2-204ENST00000553070 1523 ntAPPRIS P1 TSL 1 (best) BASIC29.59■■■□□ 2.33
CHD1O14646 ENTPD8-201ENST00000344119 2111 ntTSL 1 (best) BASIC29.59■■■□□ 2.33
CHD1O14646 ARRDC2-202ENST00000379656 2528 ntTSL 2 BASIC29.59■■■□□ 2.33
CHD1O14646 PRR14-202ENST00000300835 2198 ntAPPRIS P1 TSL 1 (best) BASIC29.59■■■□□ 2.33
CHD1O14646 FAM66C-208ENST00000541558 2087 ntTSL 2 BASIC29.59■■■□□ 2.33
CHD1O14646 FIBCD1-201ENST00000372337 1868 ntTSL 5 BASIC29.59■■■□□ 2.33
CHD1O14646 OGFOD2-211ENST00000538628 1696 ntTSL 1 (best) BASIC29.59■■■□□ 2.33
CHD1O14646 SDCBP2-204ENST00000381812 1550 ntAPPRIS P1 TSL 5 BASIC29.59■■■□□ 2.33
CHD1O14646 CRYL1-202ENST00000382812 1581 ntTSL 1 (best) BASIC29.59■■■□□ 2.33
CHD1O14646 RBFOX1-207ENST00000547338 1513 ntTSL 2 BASIC29.59■■■□□ 2.33
CHD1O14646 IGLL3P-201ENST00000412472 434 ntBASIC29.59■■■□□ 2.33
CHD1O14646 SNHG11-204ENST00000420006 720 ntTSL 3 BASIC29.59■■■□□ 2.33
CHD1O14646 SNHG11-206ENST00000432153 1181 ntTSL 3 BASIC29.59■■■□□ 2.33
CHD1O14646 AC190387.1-201ENST00000551683 408 ntBASIC29.59■■■□□ 2.33
CHD1O14646 INO80C-206ENST00000586489 594 ntTSL 3 BASIC29.59■■■□□ 2.33
CHD1O14646 PHLDB3-201ENST00000292140 2591 ntAPPRIS P1 TSL 5 BASIC29.59■■■□□ 2.33
CHD1O14646 TRIP6-201ENST00000200457 1942 ntAPPRIS P1 TSL 1 (best) BASIC29.58■■■□□ 2.33
CHD1O14646 GLB1-201ENST00000307363 2616 ntAPPRIS P4 TSL 1 (best) BASIC29.58■■■□□ 2.33
CHD1O14646 TUSC3-204ENST00000506802 1546 ntTSL 5 BASIC29.58■■■□□ 2.33
CHD1O14646 PABPC4-204ENST00000372862 2470 ntTSL 5 BASIC29.58■■■□□ 2.33
CHD1O14646 CRYGN-201ENST00000337323 754 ntAPPRIS P1 TSL 1 (best) BASIC29.58■■■□□ 2.33
CHD1O14646 AL359317.2-203ENST00000557409 538 ntTSL 4 BASIC29.58■■■□□ 2.33
CHD1O14646 MIR4745-201ENST00000577608 62 ntBASIC29.58■■■□□ 2.33
CHD1O14646 SLC39A1-209ENST00000537590 2022 ntTSL 2 BASIC29.58■■■□□ 2.33
CHD1O14646 MYBPH-201ENST00000255416 1805 ntAPPRIS P1 TSL 1 (best) BASIC29.58■■■□□ 2.33
CHD1O14646 RAB34-204ENST00000395245 1766 ntAPPRIS P1 TSL 1 (best) BASIC29.58■■■□□ 2.33
CHD1O14646 TIMM8A-201ENST00000372902 1664 ntAPPRIS P1 TSL 1 (best) BASIC29.58■■■□□ 2.33
CHD1O14646 LIMS2-207ENST00000409808 2315 ntAPPRIS ALT1 TSL 5 BASIC29.58■■■□□ 2.33
CHD1O14646 MIXL1-201ENST00000366810 2005 ntAPPRIS P1 TSL 1 (best) BASIC29.57■■■□□ 2.32
CHD1O14646 FAM3D-201ENST00000358781 1319 ntAPPRIS P1 TSL 1 (best) BASIC29.57■■■□□ 2.32
CHD1O14646 ROPN1L-201ENST00000274134 1066 ntAPPRIS P1 TSL 1 (best) BASIC29.57■■■□□ 2.32
CHD1O14646 AC015922.1-201ENST00000421102 1152 ntBASIC29.57■■■□□ 2.32
CHD1O14646 ADH5P3-201ENST00000433842 1137 ntBASIC29.57■■■□□ 2.32
CHD1O14646 AC087641.1-201ENST00000557561 1021 ntBASIC29.57■■■□□ 2.32
CHD1O14646 AC004408.1-201ENST00000579256 573 ntTSL 4 BASIC29.57■■■□□ 2.32
Retrieved 100 of 98,524 protein–RNA pairs in 37.4 ms