Protein–RNA interactions for Protein: H3BSU7

TMX2-CTNND1, TMX2-CTNND1 readthrough (NMD candidate), humanhuman

Predictions only

Length 103 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TMX2-CTNND1H3BSU7 AL445472.1-201ENST00000452532 1007 ntTSL 2 BASIC18.04■□□□□ 0.48
TMX2-CTNND1H3BSU7 AC010655.4-201ENST00000462662 707 ntTSL 4 BASIC18.04■□□□□ 0.48
TMX2-CTNND1H3BSU7 PRAP1-202ENST00000463201 587 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
TMX2-CTNND1H3BSU7 CCDC106-206ENST00000591241 1153 ntTSL 3 BASIC18.04■□□□□ 0.48
TMX2-CTNND1H3BSU7 AC024243.1-201ENST00000609234 778 ntBASIC18.04■□□□□ 0.48
TMX2-CTNND1H3BSU7 NPAP1P7-201ENST00000613027 823 ntBASIC18.04■□□□□ 0.48
TMX2-CTNND1H3BSU7 SORCS2-203ENST00000507866 6152 ntAPPRIS P2 TSL 1 (best) BASIC18.04■□□□□ 0.48
TMX2-CTNND1H3BSU7 KCNH2-203ENST00000430723 2648 ntTSL 5 BASIC18.04■□□□□ 0.48
TMX2-CTNND1H3BSU7 PRR5-ARHGAP8-201ENST00000352766 2043 ntAPPRIS P1 TSL 2 BASIC18.04■□□□□ 0.48
TMX2-CTNND1H3BSU7 ZNF48-205ENST00000613509 3339 ntAPPRIS P1 TSL 2 BASIC18.04■□□□□ 0.48
TMX2-CTNND1H3BSU7 FIP1L1-202ENST00000337488 2198 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
TMX2-CTNND1H3BSU7 KLHL40-201ENST00000287777 2517 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
TMX2-CTNND1H3BSU7 COPS7A-215ENST00000543155 2127 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
TMX2-CTNND1H3BSU7 ADAP1-217ENST00000611167 2118 ntTSL 5 BASIC18.04■□□□□ 0.48
TMX2-CTNND1H3BSU7 KDM1A-201ENST00000356634 3033 ntAPPRIS P3 TSL 1 (best) BASIC18.04■□□□□ 0.48
TMX2-CTNND1H3BSU7 MOK-201ENST00000361847 1940 ntAPPRIS P3 TSL 1 (best) BASIC18.04■□□□□ 0.48
TMX2-CTNND1H3BSU7 C1QTNF1-209ENST00000581774 1368 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
TMX2-CTNND1H3BSU7 HOXC4-201ENST00000303406 1524 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
TMX2-CTNND1H3BSU7 TOM1L1-202ENST00000445275 2228 ntTSL 2 BASIC18.03■□□□□ 0.48
TMX2-CTNND1H3BSU7 PDLIM3-201ENST00000284767 2589 ntTSL 5 BASIC18.03■□□□□ 0.48
TMX2-CTNND1H3BSU7 RIMBP3-201ENST00000619918 6105 ntAPPRIS P1 BASIC18.03■□□□□ 0.48
TMX2-CTNND1H3BSU7 CRYZL1-203ENST00000381540 1482 ntTSL 2 BASIC18.03■□□□□ 0.48
TMX2-CTNND1H3BSU7 TSPAN4-204ENST00000397404 1462 ntAPPRIS P1 TSL 5 BASIC18.03■□□□□ 0.48
TMX2-CTNND1H3BSU7 ACD-202ENST00000393919 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
TMX2-CTNND1H3BSU7 RBPMS-210ENST00000520191 1613 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
TMX2-CTNND1H3BSU7 BLACE-201ENST00000378120 2456 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
TMX2-CTNND1H3BSU7 INS-201ENST00000250971 503 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
TMX2-CTNND1H3BSU7 DHRS4-203ENST00000397075 727 ntTSL 2 BASIC18.03■□□□□ 0.48
TMX2-CTNND1H3BSU7 PRMT2-206ENST00000397638 2131 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
TMX2-CTNND1H3BSU7 FAM41C-202ENST00000432963 504 ntTSL 2 BASIC18.03■□□□□ 0.48
TMX2-CTNND1H3BSU7 SPDYE13P-201ENST00000445314 798 ntBASIC18.03■□□□□ 0.48
TMX2-CTNND1H3BSU7 AC092597.1-201ENST00000487352 616 ntBASIC18.03■□□□□ 0.48
TMX2-CTNND1H3BSU7 AC008825.1-201ENST00000504398 452 ntTSL 3 BASIC18.03■□□□□ 0.48
TMX2-CTNND1H3BSU7 PRELID1P1-202ENST00000567272 903 ntBASIC18.03■□□□□ 0.48
TMX2-CTNND1H3BSU7 PRR29-207ENST00000580752 458 ntTSL 3 BASIC18.03■□□□□ 0.48
TMX2-CTNND1H3BSU7 RABAC1-210ENST00000601891 628 ntTSL 3 BASIC18.03■□□□□ 0.48
TMX2-CTNND1H3BSU7 ANKRD36-207ENST00000639293 1168 ntAPPRIS ALT2 TSL 5 BASIC18.03■□□□□ 0.48
TMX2-CTNND1H3BSU7 USP49-202ENST00000373010 2446 ntTSL 5 BASIC18.03■□□□□ 0.48
TMX2-CTNND1H3BSU7 MSLN-207ENST00000566549 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
TMX2-CTNND1H3BSU7 TGFBR1-201ENST00000374990 5720 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
TMX2-CTNND1H3BSU7 ARHGAP8-202ENST00000356099 1584 ntAPPRIS P3 TSL 1 (best) BASIC18.03■□□□□ 0.48
TMX2-CTNND1H3BSU7 DLGAP4-201ENST00000339266 5016 ntAPPRIS ALT2 TSL 5 BASIC18.03■□□□□ 0.48
TMX2-CTNND1H3BSU7 CDKN1B-201ENST00000228872 2657 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
TMX2-CTNND1H3BSU7 SMN2-202ENST00000380742 1388 ntAPPRIS ALT2 TSL 5 BASIC18.03■□□□□ 0.48
TMX2-CTNND1H3BSU7 CCNJ-202ENST00000403870 2830 ntTSL 5 BASIC18.03■□□□□ 0.48
TMX2-CTNND1H3BSU7 TLE3-201ENST00000317509 5207 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
TMX2-CTNND1H3BSU7 ST3GAL4-205ENST00000449406 1669 ntTSL 5 BASIC18.03■□□□□ 0.48
TMX2-CTNND1H3BSU7 CAMKV-205ENST00000467248 1688 ntTSL 2 BASIC18.03■□□□□ 0.48
TMX2-CTNND1H3BSU7 SF1-203ENST00000377387 2947 ntAPPRIS ALT2 TSL 1 (best) BASIC18.02■□□□□ 0.48
TMX2-CTNND1H3BSU7 CADPS2-208ENST00000615869 6066 ntAPPRIS ALT1 TSL 5 BASIC18.02■□□□□ 0.48
TMX2-CTNND1H3BSU7 TP73-202ENST00000354437 2140 ntTSL 5 BASIC18.02■□□□□ 0.48
TMX2-CTNND1H3BSU7 VPS26A-202ENST00000373382 3229 ntAPPRIS P1 TSL 5 BASIC18.02■□□□□ 0.48
TMX2-CTNND1H3BSU7 RPLP0-219ENST00000551150 1344 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
TMX2-CTNND1H3BSU7 AGAP4-201ENST00000311652 2715 ntAPPRIS ALT2 TSL 1 (best) BASIC18.02■□□□□ 0.48
TMX2-CTNND1H3BSU7 TCEA1-201ENST00000396401 2718 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
TMX2-CTNND1H3BSU7 LGI2-201ENST00000382114 6428 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
TMX2-CTNND1H3BSU7 ACVR1B-203ENST00000426655 1782 ntTSL 2 BASIC18.02■□□□□ 0.48
TMX2-CTNND1H3BSU7 ZNF395-211ENST00000523202 2068 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
TMX2-CTNND1H3BSU7 NCOA6-207ENST00000616167 3271 ntAPPRIS ALT2 TSL 5 BASIC18.02■□□□□ 0.48
TMX2-CTNND1H3BSU7 ZNF575-201ENST00000314228 1298 ntAPPRIS P1 TSL 2 BASIC18.02■□□□□ 0.48
TMX2-CTNND1H3BSU7 MRPL43-205ENST00000370234 798 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
TMX2-CTNND1H3BSU7 MPIG6B-205ENST00000375810 910 ntAPPRIS ALT2 TSL 1 (best) BASIC18.02■□□□□ 0.48
TMX2-CTNND1H3BSU7 LAD1-202ENST00000391967 2906 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
TMX2-CTNND1H3BSU7 CYHR1-203ENST00000424149 1162 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
TMX2-CTNND1H3BSU7 IFT27-205ENST00000433985 1095 ntAPPRIS ALT1 TSL 1 (best) BASIC18.02■□□□□ 0.48
TMX2-CTNND1H3BSU7 FCMR-202ENST00000442471 1441 ntTSL 2 BASIC18.02■□□□□ 0.48
TMX2-CTNND1H3BSU7 LAMTOR4-205ENST00000468582 621 ntTSL 2 BASIC18.02■□□□□ 0.48
TMX2-CTNND1H3BSU7 CUTA-210ENST00000488034 769 ntAPPRIS ALT1 TSL 2 BASIC18.02■□□□□ 0.48
TMX2-CTNND1H3BSU7 AC125616.1-201ENST00000540369 1015 ntTSL 3 BASIC18.02■□□□□ 0.48
TMX2-CTNND1H3BSU7 C1QTNF1-205ENST00000578229 1294 ntTSL 4 BASIC18.02■□□□□ 0.48
TMX2-CTNND1H3BSU7 AC092119.3-201ENST00000612618 583 ntBASIC18.02■□□□□ 0.48
TMX2-CTNND1H3BSU7 AC112497.1-201ENST00000624824 639 ntBASIC18.02■□□□□ 0.48
TMX2-CTNND1H3BSU7 AC005906.2-207ENST00000639005 1580 ntTSL 5 BASIC18.02■□□□□ 0.48
TMX2-CTNND1H3BSU7 SLC22A23-205ENST00000436008 6641 ntAPPRIS ALT2 TSL 5 BASIC18.02■□□□□ 0.48
TMX2-CTNND1H3BSU7 PMS1-206ENST00000418224 3018 ntTSL 5 BASIC18.02■□□□□ 0.48
TMX2-CTNND1H3BSU7 MEN1-205ENST00000377316 2868 ntTSL 5 BASIC18.02■□□□□ 0.48
TMX2-CTNND1H3BSU7 APMAP-201ENST00000217456 2430 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
TMX2-CTNND1H3BSU7 LEFTY2-201ENST00000366820 2287 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
TMX2-CTNND1H3BSU7 LAG3-201ENST00000203629 1974 ntAPPRIS P2 TSL 1 (best) BASIC18.02■□□□□ 0.47
TMX2-CTNND1H3BSU7 SQSTM1-202ENST00000389805 2986 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
TMX2-CTNND1H3BSU7 ROCK2-202ENST00000315872 8292 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
TMX2-CTNND1H3BSU7 KIFC3-203ENST00000445690 3379 ntAPPRIS ALT2 TSL 1 (best) BASIC18.02■□□□□ 0.47
TMX2-CTNND1H3BSU7 SOGA3-203ENST00000525778 4077 ntAPPRIS P1 TSL 5 BASIC18.02■□□□□ 0.47
TMX2-CTNND1H3BSU7 QPRT-202ENST00000395384 2343 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
TMX2-CTNND1H3BSU7 WNT5B-201ENST00000310594 2184 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
TMX2-CTNND1H3BSU7 ST3GAL3-219ENST00000372374 2170 ntTSL 5 BASIC18.01■□□□□ 0.47
TMX2-CTNND1H3BSU7 P2RX5-202ENST00000345901 2031 ntTSL 5 BASIC18.01■□□□□ 0.47
TMX2-CTNND1H3BSU7 ASMTL-201ENST00000381317 2027 ntAPPRIS P3 TSL 1 (best) BASIC18.01■□□□□ 0.47
TMX2-CTNND1H3BSU7 ASMTL-202ENST00000381333 2035 ntAPPRIS ALT2 TSL 2 BASIC18.01■□□□□ 0.47
TMX2-CTNND1H3BSU7 FOXD4L6-201ENST00000622588 2034 ntAPPRIS P1 BASIC18.01■□□□□ 0.47
TMX2-CTNND1H3BSU7 ATRIP-201ENST00000320211 2590 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
TMX2-CTNND1H3BSU7 SLCO6A1-201ENST00000379807 2437 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
TMX2-CTNND1H3BSU7 KCNK4-207ENST00000539216 1723 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
TMX2-CTNND1H3BSU7 SYT8-202ENST00000381968 1424 ntAPPRIS P2 TSL 5 BASIC18.01■□□□□ 0.47
TMX2-CTNND1H3BSU7 KRT8P7-201ENST00000533003 1432 ntBASIC18.01■□□□□ 0.47
TMX2-CTNND1H3BSU7 VIPR1-201ENST00000325123 2773 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
TMX2-CTNND1H3BSU7 ZNF446-203ENST00000594369 2238 ntAPPRIS P2 TSL 1 (best) BASIC18.01■□□□□ 0.47
TMX2-CTNND1H3BSU7 CHIC2-201ENST00000263921 1194 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
TMX2-CTNND1H3BSU7 TMEM190-201ENST00000291934 593 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
TMX2-CTNND1H3BSU7 AP2S1-202ENST00000352203 793 ntTSL 2 BASIC18.01■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 50.2 ms