Protein–RNA interactions for Protein: Q9Y6N9

USH1C, Harmonin, humanhuman

Predictions only

Length 552 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USH1CQ9Y6N9 PRELID3A-201ENST00000336990 1715 ntAPPRIS P1 TSL 2 BASIC18.35■□□□□ 0.53
USH1CQ9Y6N9 PRELID3A-202ENST00000440960 1716 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
USH1CQ9Y6N9 CACNA1I-201ENST00000401624 6740 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
USH1CQ9Y6N9 OGFOD3-202ENST00000329197 1652 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
USH1CQ9Y6N9 NFIC-211ENST00000641145 8399 ntBASIC18.34■□□□□ 0.53
USH1CQ9Y6N9 CIRBP-202ENST00000413636 1606 ntTSL 2 BASIC18.34■□□□□ 0.53
USH1CQ9Y6N9 GDPD5-214ENST00000533784 2441 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
USH1CQ9Y6N9 PCK2-205ENST00000558096 2433 ntTSL 2 BASIC18.34■□□□□ 0.53
USH1CQ9Y6N9 SAAL1-201ENST00000300013 1518 ntAPPRIS ALT1 TSL 2 BASIC18.34■□□□□ 0.53
USH1CQ9Y6N9 MAEA-208ENST00000505839 1444 ntTSL 2 BASIC18.34■□□□□ 0.53
USH1CQ9Y6N9 MSLNL-201ENST00000442466 2109 ntAPPRIS P1 TSL 5 BASIC18.34■□□□□ 0.53
USH1CQ9Y6N9 ASB1-201ENST00000264607 6994 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
USH1CQ9Y6N9 PCDHGC5-202ENST00000610789 2763 ntAPPRIS ALT2 BASIC18.34■□□□□ 0.53
USH1CQ9Y6N9 ELF2-204ENST00000394235 4012 ntAPPRIS P1 TSL 5 BASIC18.34■□□□□ 0.53
USH1CQ9Y6N9 DHCR7-201ENST00000355527 2666 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
USH1CQ9Y6N9 GABARAPL1-201ENST00000266458 1957 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
USH1CQ9Y6N9 LINC00535-201ENST00000501400 1914 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
USH1CQ9Y6N9 FNDC11-201ENST00000370097 1119 ntAPPRIS P1 TSL 2 BASIC18.34■□□□□ 0.53
USH1CQ9Y6N9 CBY3-201ENST00000376974 785 ntAPPRIS P1 TSL 2 BASIC18.34■□□□□ 0.53
USH1CQ9Y6N9 KLRG2-202ENST00000393039 1148 ntTSL 5 BASIC18.34■□□□□ 0.53
USH1CQ9Y6N9 KCNMA1-220ENST00000481070 896 ntTSL 2 BASIC18.34■□□□□ 0.53
USH1CQ9Y6N9 AC068987.1-201ENST00000562996 427 ntTSL 3 BASIC18.34■□□□□ 0.53
USH1CQ9Y6N9 AC012313.6-201ENST00000599889 790 ntTSL 3 BASIC18.34■□□□□ 0.53
USH1CQ9Y6N9 CD99-210ENST00000611428 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
USH1CQ9Y6N9 AC120498.8-201ENST00000614275 531 ntBASIC18.34■□□□□ 0.53
USH1CQ9Y6N9 OGFR-204ENST00000621591 1194 ntTSL 5 BASIC18.34■□□□□ 0.53
USH1CQ9Y6N9 ADAM23-201ENST00000264377 6330 ntAPPRIS P2 TSL 1 (best) BASIC18.34■□□□□ 0.53
USH1CQ9Y6N9 TPRA1-204ENST00000450633 1865 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
USH1CQ9Y6N9 CEP120-201ENST00000306467 4900 ntAPPRIS P1 TSL 5 BASIC18.34■□□□□ 0.53
USH1CQ9Y6N9 UNC13A-205ENST00000551649 6052 ntAPPRIS ALT2 TSL 5 BASIC18.34■□□□□ 0.53
USH1CQ9Y6N9 AL139384.1-201ENST00000612143 3047 ntBASIC18.34■□□□□ 0.53
USH1CQ9Y6N9 EIPR1-201ENST00000382125 1766 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
USH1CQ9Y6N9 QPCTL-201ENST00000012049 2310 ntAPPRIS P1 TSL 2 BASIC18.34■□□□□ 0.53
USH1CQ9Y6N9 BMPER-201ENST00000297161 5031 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
USH1CQ9Y6N9 VPS51-201ENST00000279281 2714 ntAPPRIS P2 TSL 1 (best) BASIC18.34■□□□□ 0.53
USH1CQ9Y6N9 RNF112-201ENST00000461366 3212 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
USH1CQ9Y6N9 TIMM50-202ENST00000544017 2572 ntAPPRIS P2 TSL 1 (best) BASIC18.34■□□□□ 0.53
USH1CQ9Y6N9 ZNF326-202ENST00000361911 1538 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
USH1CQ9Y6N9 PHB2-203ENST00000535923 1515 ntAPPRIS P2 TSL 5 BASIC18.33■□□□□ 0.53
USH1CQ9Y6N9 TSC22D4-202ENST00000393991 1469 ntTSL 2 BASIC18.33■□□□□ 0.53
USH1CQ9Y6N9 PACS1-201ENST00000320580 4392 ntAPPRIS P2 TSL 1 (best) BASIC18.33■□□□□ 0.53
USH1CQ9Y6N9 MIEF2-204ENST00000395706 2441 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
USH1CQ9Y6N9 DIO3OS-212ENST00000557661 1937 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
USH1CQ9Y6N9 AC027796.3-201ENST00000572919 4753 ntAPPRIS P1 TSL 5 BASIC18.33■□□□□ 0.53
USH1CQ9Y6N9 CYP2W1-202ENST00000340150 2361 ntTSL 2 BASIC18.33■□□□□ 0.53
USH1CQ9Y6N9 AC112777.1-201ENST00000540175 1423 ntBASIC18.33■□□□□ 0.53
USH1CQ9Y6N9 CD99P1-204ENST00000435581 2788 ntTSL 2 BASIC18.33■□□□□ 0.53
USH1CQ9Y6N9 FBXL17-201ENST00000359660 4510 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
USH1CQ9Y6N9 C8orf34-206ENST00000518698 2223 ntAPPRIS P2 TSL 2 BASIC18.33■□□□□ 0.53
USH1CQ9Y6N9 PDLIM3-202ENST00000284770 1766 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
USH1CQ9Y6N9 ARFGAP2-229ENST00000627920 2613 ntTSL 2 BASIC18.33■□□□□ 0.53
USH1CQ9Y6N9 AP2S1-201ENST00000263270 935 ntAPPRIS P3 TSL 1 (best) BASIC18.33■□□□□ 0.52
USH1CQ9Y6N9 CAVIN3-201ENST00000303927 1174 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
USH1CQ9Y6N9 SLC29A4P2-201ENST00000504749 1089 ntBASIC18.33■□□□□ 0.52
USH1CQ9Y6N9 RGMA-211ENST00000557420 989 ntTSL 3 BASIC18.33■□□□□ 0.52
USH1CQ9Y6N9 AC092118.2-201ENST00000613495 667 ntBASIC18.33■□□□□ 0.52
USH1CQ9Y6N9 AC073111.5-205ENST00000641717 521 ntBASIC18.33■□□□□ 0.52
USH1CQ9Y6N9 RAB33B-201ENST00000305626 4562 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
USH1CQ9Y6N9 CNST-202ENST00000366512 2422 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
USH1CQ9Y6N9 CFC1-202ENST00000615342 1554 ntTSL 5 BASIC18.33■□□□□ 0.52
USH1CQ9Y6N9 CFC1B-202ENST00000619050 1554 ntTSL 5 BASIC18.33■□□□□ 0.52
USH1CQ9Y6N9 FBXL16-202ENST00000397621 3547 ntAPPRIS P1 TSL 5 BASIC18.33■□□□□ 0.52
USH1CQ9Y6N9 FAM111A-204ENST00000528737 6189 ntAPPRIS P1 TSL 2 BASIC18.33■□□□□ 0.52
USH1CQ9Y6N9 POLR3D-201ENST00000306433 1931 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
USH1CQ9Y6N9 CASZ1-202ENST00000377022 7936 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
USH1CQ9Y6N9 PDLIM2-207ENST00000409417 1487 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
USH1CQ9Y6N9 AP5S1-203ENST00000379573 1848 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
USH1CQ9Y6N9 PPT2-247ENST00000375143 1754 ntAPPRIS ALT2 TSL 5 BASIC18.32■□□□□ 0.52
USH1CQ9Y6N9 NARF-204ENST00000390006 1766 ntTSL 2 BASIC18.32■□□□□ 0.52
USH1CQ9Y6N9 LHFPL6-201ENST00000379589 2110 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
USH1CQ9Y6N9 POMT1-208ENST00000423007 3320 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
USH1CQ9Y6N9 ADO-201ENST00000373783 3627 ntAPPRIS P1 BASIC18.32■□□□□ 0.52
USH1CQ9Y6N9 GPAT3-202ENST00000395226 2631 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
USH1CQ9Y6N9 JMJD4-201ENST00000366758 2595 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
USH1CQ9Y6N9 METTL21A-203ENST00000411432 4805 ntAPPRIS P1 TSL 2 BASIC18.32■□□□□ 0.52
USH1CQ9Y6N9 IZUMO2-201ENST00000293405 728 ntAPPRIS P2 TSL 1 (best) BASIC18.32■□□□□ 0.52
USH1CQ9Y6N9 GATS-209ENST00000454084 1030 ntTSL 3 BASIC18.32■□□□□ 0.52
USH1CQ9Y6N9 C1orf52-203ENST00000471115 1219 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
USH1CQ9Y6N9 OAS3-207ENST00000551007 998 ntTSL 2 BASIC18.32■□□□□ 0.52
USH1CQ9Y6N9 CIRBP-213ENST00000587323 1092 ntTSL 5 BASIC18.32■□□□□ 0.52
USH1CQ9Y6N9 SLC6A6-208ENST00000621751 1252 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
USH1CQ9Y6N9 HLA-B-256ENST00000639848 1089 ntBASIC18.32■□□□□ 0.52
USH1CQ9Y6N9 AC068587.9-201ENST00000641814 219 ntBASIC18.32■□□□□ 0.52
USH1CQ9Y6N9 ZDHHC4-205ENST00000396713 1552 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
USH1CQ9Y6N9 NPIPA8-201ENST00000525596 1565 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
USH1CQ9Y6N9 USP39-201ENST00000323701 2177 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
USH1CQ9Y6N9 PLD3-206ENST00000409587 2180 ntAPPRIS P1 TSL 5 BASIC18.32■□□□□ 0.52
USH1CQ9Y6N9 IFFO1-211ENST00000615885 2775 ntTSL 5 BASIC18.32■□□□□ 0.52
USH1CQ9Y6N9 PLPPR4-202ENST00000370185 5369 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
USH1CQ9Y6N9 CNTNAP3-201ENST00000297668 5064 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
USH1CQ9Y6N9 C1orf56-201ENST00000368926 2096 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
USH1CQ9Y6N9 MFGE8-202ENST00000268151 1752 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
USH1CQ9Y6N9 KATNBL1P6-202ENST00000562413 1466 ntBASIC18.32■□□□□ 0.52
USH1CQ9Y6N9 AL162311.3-201ENST00000555918 2867 ntTSL 2 BASIC18.32■□□□□ 0.52
USH1CQ9Y6N9 MID1IP1-201ENST00000336949 2536 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
USH1CQ9Y6N9 ORAI2-202ENST00000403646 2528 ntAPPRIS P1 TSL 2 BASIC18.31■□□□□ 0.52
USH1CQ9Y6N9 RNF2-201ENST00000367509 1677 ntTSL 2 BASIC18.31■□□□□ 0.52
USH1CQ9Y6N9 ZNF644-201ENST00000337393 5763 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
USH1CQ9Y6N9 LGALS9C-209ENST00000581545 1378 ntTSL 5 BASIC18.31■□□□□ 0.52
USH1CQ9Y6N9 COL4A2-201ENST00000360467 6281 ntAPPRIS P1 TSL 5 BASIC18.31■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 48.7 ms