Protein–RNA interactions for Protein: Q9NZC9

SMARCAL1, SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1, humanhuman

Predictions only

Length 954 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCAL1Q9NZC9 AL096828.2-201ENST00000567259 1965 ntBASIC19.41■□□□□ 0.7
SMARCAL1Q9NZC9 PLA2G4C-222ENST00000599921 1984 ntAPPRIS P3 TSL 1 (best) BASIC19.41■□□□□ 0.7
SMARCAL1Q9NZC9 AC008878.3-201ENST00000617428 4964 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
SMARCAL1Q9NZC9 TTC34-201ENST00000401095 8814 ntAPPRIS ALT2 TSL 5 BASIC19.4■□□□□ 0.7
SMARCAL1Q9NZC9 GPAT3-202ENST00000395226 2631 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
SMARCAL1Q9NZC9 ADIRF-AS1-201ENST00000418273 2627 ntTSL 3 BASIC19.4■□□□□ 0.7
SMARCAL1Q9NZC9 SDHA-213ENST00000510361 2148 ntTSL 2 BASIC19.4■□□□□ 0.7
SMARCAL1Q9NZC9 AC108860.2-201ENST00000562760 2183 ntBASIC19.4■□□□□ 0.7
SMARCAL1Q9NZC9 CADPS2-208ENST00000615869 6066 ntAPPRIS ALT1 TSL 5 BASIC19.4■□□□□ 0.7
SMARCAL1Q9NZC9 ZSCAN18-201ENST00000240727 2779 ntAPPRIS P3 TSL 1 (best) BASIC19.4■□□□□ 0.7
SMARCAL1Q9NZC9 COQ8A-201ENST00000366777 2872 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
SMARCAL1Q9NZC9 CDC14B-208ENST00000463569 1734 ntAPPRIS ALT2 TSL 5 BASIC19.4■□□□□ 0.7
SMARCAL1Q9NZC9 TPGS2-219ENST00000593035 1727 ntAPPRIS ALT2 TSL 2 BASIC19.4■□□□□ 0.7
SMARCAL1Q9NZC9 PITPNC1-201ENST00000299954 6359 ntAPPRIS ALT2 TSL 5 BASIC19.4■□□□□ 0.7
SMARCAL1Q9NZC9 ITGA7-201ENST00000257879 4120 ntAPPRIS P3 TSL 1 (best) BASIC19.4■□□□□ 0.7
SMARCAL1Q9NZC9 DNAJB2-201ENST00000336576 3176 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
SMARCAL1Q9NZC9 CLIC6-201ENST00000349499 3806 ntAPPRIS P3 TSL 1 (best) BASIC19.4■□□□□ 0.7
SMARCAL1Q9NZC9 KRASP1-201ENST00000407852 552 ntBASIC19.4■□□□□ 0.7
SMARCAL1Q9NZC9 AC004980.1-204ENST00000429707 299 ntBASIC19.4■□□□□ 0.7
SMARCAL1Q9NZC9 Z98884.1-201ENST00000451646 830 ntTSL 3 BASIC19.4■□□□□ 0.7
SMARCAL1Q9NZC9 AC091390.4-202ENST00000476426 537 ntBASIC19.4■□□□□ 0.7
SMARCAL1Q9NZC9 C5orf49-202ENST00000509627 1020 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
SMARCAL1Q9NZC9 GLRB-205ENST00000512619 728 ntTSL 3 BASIC19.4■□□□□ 0.7
SMARCAL1Q9NZC9 B3GAT3-205ENST00000534026 1120 ntTSL 2 BASIC19.4■□□□□ 0.7
SMARCAL1Q9NZC9 TESC-AS1-201ENST00000547006 1053 ntTSL 2 BASIC19.4■□□□□ 0.7
SMARCAL1Q9NZC9 PRRT1-201ENST00000211413 1909 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
SMARCAL1Q9NZC9 SLC2A8-202ENST00000373360 1937 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
SMARCAL1Q9NZC9 ZNF623-201ENST00000458270 2733 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
SMARCAL1Q9NZC9 AC120049.1-201ENST00000592638 2065 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
SMARCAL1Q9NZC9 AMFR-201ENST00000290649 3600 ntAPPRIS P2 TSL 1 (best) BASIC19.4■□□□□ 0.7
SMARCAL1Q9NZC9 BTG3-201ENST00000339775 1485 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
SMARCAL1Q9NZC9 MINOS1-NBL1-204ENST00000602662 1623 ntAPPRIS P1 TSL 2 BASIC19.4■□□□□ 0.7
SMARCAL1Q9NZC9 TICAM1-202ENST00000621756 1650 ntTSL 5 BASIC19.4■□□□□ 0.7
SMARCAL1Q9NZC9 TMEM128-201ENST00000254742 1737 ntTSL 1 (best) BASIC19.39■□□□□ 0.7
SMARCAL1Q9NZC9 RGN-204ENST00000457380 2041 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
SMARCAL1Q9NZC9 AC005498.3-201ENST00000596587 2045 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
SMARCAL1Q9NZC9 SPATC1L-201ENST00000291672 2303 ntAPPRIS P1 TSL 2 BASIC19.39■□□□□ 0.69
SMARCAL1Q9NZC9 CADPS2-202ENST00000334010 6045 ntAPPRIS ALT2 TSL 5 BASIC19.39■□□□□ 0.69
SMARCAL1Q9NZC9 CDC25A-202ENST00000351231 3663 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
SMARCAL1Q9NZC9 INPP5J-207ENST00000405300 2515 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
SMARCAL1Q9NZC9 C5orf56-203ENST00000378953 942 ntAPPRIS ALT2 TSL 2 BASIC19.39■□□□□ 0.69
SMARCAL1Q9NZC9 UBE2F-203ENST00000409633 837 ntTSL 3 BASIC19.39■□□□□ 0.69
SMARCAL1Q9NZC9 HOXB-AS3-204ENST00000466037 522 ntTSL 3 BASIC19.39■□□□□ 0.69
SMARCAL1Q9NZC9 BAALC-AS1-206ENST00000521383 736 ntTSL 3 BASIC19.39■□□□□ 0.69
SMARCAL1Q9NZC9 KAZN-209ENST00000636564 1197 ntTSL 5 BASIC19.39■□□□□ 0.69
SMARCAL1Q9NZC9 SPAG6-203ENST00000376624 2605 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
SMARCAL1Q9NZC9 HTR7P1-201ENST00000538670 1336 ntBASIC19.39■□□□□ 0.69
SMARCAL1Q9NZC9 GTF3A-201ENST00000381140 1383 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
SMARCAL1Q9NZC9 GPBAR1-202ENST00000519574 1382 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
SMARCAL1Q9NZC9 RNASET2-214ENST00000620173 1391 ntTSL 5 BASIC19.39■□□□□ 0.69
SMARCAL1Q9NZC9 NIPAL2-202ENST00000430223 4496 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
SMARCAL1Q9NZC9 USP32-201ENST00000300896 5171 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
SMARCAL1Q9NZC9 C1orf159-205ENST00000421241 1841 ntAPPRIS P3 TSL 2 BASIC19.39■□□□□ 0.69
SMARCAL1Q9NZC9 ACSM2B-208ENST00000565322 1834 ntTSL 2 BASIC19.39■□□□□ 0.69
SMARCAL1Q9NZC9 STK4-201ENST00000372801 2038 ntTSL 2 BASIC19.39■□□□□ 0.69
SMARCAL1Q9NZC9 AC013275.1-201ENST00000413602 2019 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
SMARCAL1Q9NZC9 FAM53A-205ENST00000472884 2086 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
SMARCAL1Q9NZC9 ARID1A-201ENST00000324856 8577 ntAPPRIS P3 TSL 1 (best) BASIC19.39■□□□□ 0.69
SMARCAL1Q9NZC9 RCC1-202ENST00000373832 2424 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
SMARCAL1Q9NZC9 RSPH6A-201ENST00000221538 2456 ntAPPRIS P2 TSL 1 (best) BASIC19.38■□□□□ 0.69
SMARCAL1Q9NZC9 SQOR-201ENST00000260324 2003 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
SMARCAL1Q9NZC9 SEPT11-201ENST00000264893 5593 ntAPPRIS P2 TSL 1 (best) BASIC19.38■□□□□ 0.69
SMARCAL1Q9NZC9 TMEFF2-201ENST00000272771 2604 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
SMARCAL1Q9NZC9 OGFR-201ENST00000290291 2410 ntAPPRIS P2 TSL 1 (best) BASIC19.38■□□□□ 0.69
SMARCAL1Q9NZC9 CLTA-202ENST00000345519 1073 ntAPPRIS ALT1 TSL 1 (best) BASIC19.38■□□□□ 0.69
SMARCAL1Q9NZC9 MTMR14-203ENST00000353332 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC19.38■□□□□ 0.69
SMARCAL1Q9NZC9 CEACAM3-202ENST00000357396 1316 ntAPPRIS P3 TSL 1 (best) BASIC19.38■□□□□ 0.69
SMARCAL1Q9NZC9 PDE4D-204ENST00000358923 2969 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
SMARCAL1Q9NZC9 NMRK1-201ENST00000361092 1185 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
SMARCAL1Q9NZC9 TMEM35B-201ENST00000373337 922 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
SMARCAL1Q9NZC9 FAM167B-201ENST00000373582 936 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
SMARCAL1Q9NZC9 PPT2-247ENST00000375143 1754 ntAPPRIS ALT2 TSL 5 BASIC19.38■□□□□ 0.69
SMARCAL1Q9NZC9 KDELC1-201ENST00000376004 2060 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
SMARCAL1Q9NZC9 CCK-202ENST00000396169 1527 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
SMARCAL1Q9NZC9 MOCS2-202ENST00000396954 1785 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
SMARCAL1Q9NZC9 AC007405.3-201ENST00000429172 561 ntTSL 3 BASIC19.38■□□□□ 0.69
SMARCAL1Q9NZC9 APEH-202ENST00000438011 2249 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
SMARCAL1Q9NZC9 STYXL1-208ENST00000451157 1570 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
SMARCAL1Q9NZC9 ASCL5-202ENST00000458416 1420 ntAPPRIS P1 BASIC19.38■□□□□ 0.69
SMARCAL1Q9NZC9 EPS8L2-205ENST00000526198 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC19.38■□□□□ 0.69
SMARCAL1Q9NZC9 SIVA1-203ENST00000535554 1244 ntAPPRIS ALT1 TSL 2 BASIC19.38■□□□□ 0.69
SMARCAL1Q9NZC9 BCL2L10-202ENST00000561198 825 ntAPPRIS ALT2 TSL 1 (best) BASIC19.38■□□□□ 0.69
SMARCAL1Q9NZC9 AC022211.2-202ENST00000582668 546 ntTSL 4 BASIC19.38■□□□□ 0.69
SMARCAL1Q9NZC9 SLC1A5-205ENST00000594991 2031 ntTSL 2 BASIC19.38■□□□□ 0.69
SMARCAL1Q9NZC9 RCAN3-209ENST00000616511 2527 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
SMARCAL1Q9NZC9 MARK4-211ENST00000622871 1147 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
SMARCAL1Q9NZC9 NLRP6-203ENST00000534750 2936 ntAPPRIS ALT2 TSL 2 BASIC19.38■□□□□ 0.69
SMARCAL1Q9NZC9 CLCN2-204ENST00000434054 2897 ntAPPRIS ALT2 TSL 2 BASIC19.38■□□□□ 0.69
SMARCAL1Q9NZC9 ZNF302-201ENST00000423823 2590 ntAPPRIS P3 TSL 1 (best) BASIC19.38■□□□□ 0.69
SMARCAL1Q9NZC9 ORAI2-202ENST00000403646 2528 ntAPPRIS P1 TSL 2 BASIC19.38■□□□□ 0.69
SMARCAL1Q9NZC9 SLCO6A1-202ENST00000389019 2340 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
SMARCAL1Q9NZC9 ERMARD-210ENST00000588451 2146 ntTSL 5 BASIC19.37■□□□□ 0.69
SMARCAL1Q9NZC9 EDC3-214ENST00000568176 1825 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
SMARCAL1Q9NZC9 LPAR2-201ENST00000407877 1791 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
SMARCAL1Q9NZC9 ACBD4-215ENST00000592162 1684 ntTSL 5 BASIC19.37■□□□□ 0.69
SMARCAL1Q9NZC9 LGALS12-203ENST00000394618 1618 ntAPPRIS P3 TSL 1 (best) BASIC19.37■□□□□ 0.69
SMARCAL1Q9NZC9 TP53BP2-201ENST00000343537 4651 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
SMARCAL1Q9NZC9 HOXC13-AS-201ENST00000512916 1408 ntTSL 3 BASIC19.37■□□□□ 0.69
SMARCAL1Q9NZC9 VASN-201ENST00000304735 2806 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
SMARCAL1Q9NZC9 AC239809.2-201ENST00000415381 517 ntBASIC19.37■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 29.8 ms