Protein–RNA interactions for Protein: Q9HD45

TM9SF3, Transmembrane 9 superfamily member 3, humanhuman

Predictions only

Length 589 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF3Q9HD45 XKR6-203ENST00000416569 3382 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
TM9SF3Q9HD45 ADAM33-202ENST00000356518 3677 ntAPPRIS P3 TSL 1 (best) BASIC18.41■□□□□ 0.54
TM9SF3Q9HD45 APBB1-207ENST00000529519 1442 ntTSL 5 BASIC18.4■□□□□ 0.54
TM9SF3Q9HD45 ENTPD8-204ENST00000472938 1749 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
TM9SF3Q9HD45 KRT8P32-201ENST00000512863 1461 ntBASIC18.4■□□□□ 0.54
TM9SF3Q9HD45 KRT8-217ENST00000619952 2437 ntTSL 2 BASIC18.4■□□□□ 0.54
TM9SF3Q9HD45 LTBP4-201ENST00000204005 5032 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
TM9SF3Q9HD45 RSAD1-201ENST00000258955 2528 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
TM9SF3Q9HD45 LRWD1-201ENST00000292616 2215 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
TM9SF3Q9HD45 MRPS15-201ENST00000373116 1006 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
TM9SF3Q9HD45 TSPY19P-201ENST00000418461 509 ntBASIC18.4■□□□□ 0.54
TM9SF3Q9HD45 TSPY18P-201ENST00000441642 509 ntBASIC18.4■□□□□ 0.54
TM9SF3Q9HD45 FNDC5-205ENST00000496770 837 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
TM9SF3Q9HD45 AL512357.1-201ENST00000557687 518 ntTSL 4 BASIC18.4■□□□□ 0.54
TM9SF3Q9HD45 AC026471.3-201ENST00000565137 578 ntTSL 2 BASIC18.4■□□□□ 0.54
TM9SF3Q9HD45 AC008878.4-201ENST00000602083 293 ntTSL 5 BASIC18.4■□□□□ 0.54
TM9SF3Q9HD45 SCAMP4-213ENST00000621748 1172 ntAPPRIS P1 TSL 5 BASIC18.4■□□□□ 0.54
TM9SF3Q9HD45 HOXB9-201ENST00000311177 2581 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
TM9SF3Q9HD45 RPH3A-203ENST00000543106 2581 ntAPPRIS ALT2 TSL 2 BASIC18.4■□□□□ 0.54
TM9SF3Q9HD45 UBC-206ENST00000538617 1303 ntTSL 5 BASIC18.4■□□□□ 0.54
TM9SF3Q9HD45 DSCC1-201ENST00000313655 2314 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
TM9SF3Q9HD45 ABCB9-202ENST00000344275 2394 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
TM9SF3Q9HD45 FEM1AP3-201ENST00000403722 1741 ntBASIC18.4■□□□□ 0.54
TM9SF3Q9HD45 KRT8P10-201ENST00000450021 1447 ntBASIC18.4■□□□□ 0.54
TM9SF3Q9HD45 KRT81-202ENST00000615839 1505 ntAPPRIS ALT2 TSL 5 BASIC18.39■□□□□ 0.54
TM9SF3Q9HD45 AC020661.1-201ENST00000503052 1584 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
TM9SF3Q9HD45 EDNRA-206ENST00000511804 1569 ntTSL 2 BASIC18.39■□□□□ 0.53
TM9SF3Q9HD45 SPOPL-201ENST00000280098 6025 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
TM9SF3Q9HD45 ASMTL-201ENST00000381317 2027 ntAPPRIS P3 TSL 1 (best) BASIC18.39■□□□□ 0.53
TM9SF3Q9HD45 SIGIRR-220ENST00000531205 1649 ntTSL 2 BASIC18.39■□□□□ 0.53
TM9SF3Q9HD45 GSTO2-201ENST00000338595 1179 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
TM9SF3Q9HD45 AL645608.6-201ENST00000418300 402 ntTSL 3 BASIC18.39■□□□□ 0.53
TM9SF3Q9HD45 PVRIG2P-201ENST00000435460 978 ntBASIC18.39■□□□□ 0.53
TM9SF3Q9HD45 AP003733.1-201ENST00000491725 852 ntBASIC18.39■□□□□ 0.53
TM9SF3Q9HD45 AC012615.1-201ENST00000565797 1299 ntBASIC18.39■□□□□ 0.53
TM9SF3Q9HD45 MIR2117HG-201ENST00000588060 506 ntTSL 4 BASIC18.39■□□□□ 0.53
TM9SF3Q9HD45 AC005332.3-201ENST00000589904 676 ntBASIC18.39■□□□□ 0.53
TM9SF3Q9HD45 BID-205ENST00000399774 2167 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
TM9SF3Q9HD45 MUTYH-203ENST00000372098 1839 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
TM9SF3Q9HD45 MUTYH-204ENST00000372104 1823 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
TM9SF3Q9HD45 MUTYH-205ENST00000372110 1809 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
TM9SF3Q9HD45 WDR45-205ENST00000376358 1432 ntTSL 2 BASIC18.39■□□□□ 0.53
TM9SF3Q9HD45 SLC25A3-201ENST00000188376 1909 ntAPPRIS ALT1 TSL 1 (best) BASIC18.39■□□□□ 0.53
TM9SF3Q9HD45 PTPRJ-207ENST00000613246 7851 ntAPPRIS ALT2 TSL 5 BASIC18.39■□□□□ 0.53
TM9SF3Q9HD45 USF2-202ENST00000343550 1523 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
TM9SF3Q9HD45 PITX2-203ENST00000355080 2100 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
TM9SF3Q9HD45 LRPPRC-202ENST00000409659 1610 ntTSL 5 BASIC18.38■□□□□ 0.53
TM9SF3Q9HD45 WDR18-202ENST00000585809 1608 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
TM9SF3Q9HD45 AC012615.6-201ENST00000593201 1697 ntTSL 2 BASIC18.38■□□□□ 0.53
TM9SF3Q9HD45 MORC4-201ENST00000255495 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
TM9SF3Q9HD45 PFN2-203ENST00000452853 1780 ntAPPRIS ALT1 TSL 1 (best) BASIC18.38■□□□□ 0.53
TM9SF3Q9HD45 FDXR-217ENST00000582944 1766 ntTSL 2 BASIC18.38■□□□□ 0.53
TM9SF3Q9HD45 SLC27A3-204ENST00000368661 2410 ntAPPRIS P2 TSL 1 (best) BASIC18.38■□□□□ 0.53
TM9SF3Q9HD45 MYH14-208ENST00000598205 6137 ntAPPRIS P3 TSL 5 BASIC18.38■□□□□ 0.53
TM9SF3Q9HD45 LARGE2-201ENST00000325468 2522 ntAPPRIS P3 TSL 1 (best) BASIC18.38■□□□□ 0.53
TM9SF3Q9HD45 KLK12-201ENST00000250351 882 ntAPPRIS P4 TSL 5 BASIC18.38■□□□□ 0.53
TM9SF3Q9HD45 CARHSP1-201ENST00000311052 746 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
TM9SF3Q9HD45 TCEAL2-201ENST00000329035 1080 ntAPPRIS P1 TSL 5 BASIC18.38■□□□□ 0.53
TM9SF3Q9HD45 CHCHD1-201ENST00000372833 835 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
TM9SF3Q9HD45 VKORC1-205ENST00000394975 1012 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
TM9SF3Q9HD45 EMBP1-201ENST00000458200 901 ntBASIC18.38■□□□□ 0.53
TM9SF3Q9HD45 MRPL52-215ENST00000556840 398 ntTSL 2 BASIC18.38■□□□□ 0.53
TM9SF3Q9HD45 BRICD5-203ENST00000566018 555 ntTSL 2 BASIC18.38■□□□□ 0.53
TM9SF3Q9HD45 AL121772.3-201ENST00000610840 674 ntBASIC18.38■□□□□ 0.53
TM9SF3Q9HD45 AC243773.1-201ENST00000614759 544 ntTSL 5 BASIC18.38■□□□□ 0.53
TM9SF3Q9HD45 EBLN3P-205ENST00000629870 958 ntTSL 3 BASIC18.38■□□□□ 0.53
TM9SF3Q9HD45 CTNNBL1-201ENST00000361383 1925 ntAPPRIS P2 TSL 1 (best) BASIC18.38■□□□□ 0.53
TM9SF3Q9HD45 SLC3A2-202ENST00000377889 1993 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
TM9SF3Q9HD45 NFATC1-201ENST00000253506 4642 ntAPPRIS P3 TSL 1 (best) BASIC18.38■□□□□ 0.53
TM9SF3Q9HD45 LINC00960-201ENST00000463183 1333 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
TM9SF3Q9HD45 CCNJ-203ENST00000465148 2677 ntAPPRIS P1 TSL 2 BASIC18.38■□□□□ 0.53
TM9SF3Q9HD45 EEF1A2-201ENST00000217182 2006 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
TM9SF3Q9HD45 CALB2-202ENST00000349553 1373 ntTSL 5 BASIC18.38■□□□□ 0.53
TM9SF3Q9HD45 SLC35G2-202ENST00000446465 2060 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
TM9SF3Q9HD45 GRAMD2B-219ENST00000544396 2822 ntTSL 2 BASIC18.38■□□□□ 0.53
TM9SF3Q9HD45 DSCAM-201ENST00000400454 8552 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
TM9SF3Q9HD45 PCCA-201ENST00000376279 2418 ntTSL 2 BASIC18.38■□□□□ 0.53
TM9SF3Q9HD45 AC034236.2-201ENST00000606662 1610 ntBASIC18.38■□□□□ 0.53
TM9SF3Q9HD45 BLACE-201ENST00000378120 2456 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
TM9SF3Q9HD45 CNOT11-201ENST00000289382 2599 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
TM9SF3Q9HD45 TMEM74-201ENST00000297459 1741 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
TM9SF3Q9HD45 FAM189B-204ENST00000368368 2609 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
TM9SF3Q9HD45 SENP6-201ENST00000327284 2700 ntTSL 2 BASIC18.37■□□□□ 0.53
TM9SF3Q9HD45 ANGPTL4-201ENST00000301455 1879 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
TM9SF3Q9HD45 PLCXD1-202ENST00000381663 1863 ntAPPRIS P2 TSL 5 BASIC18.37■□□□□ 0.53
TM9SF3Q9HD45 DCAF4-201ENST00000353777 1940 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
TM9SF3Q9HD45 PLD4-204ENST00000540372 2007 ntAPPRIS ALT2 TSL 2 BASIC18.37■□□□□ 0.53
TM9SF3Q9HD45 NR1D2-201ENST00000312521 5258 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
TM9SF3Q9HD45 CYTH1-209ENST00000589296 2159 ntTSL 5 BASIC18.37■□□□□ 0.53
TM9SF3Q9HD45 FAM69B-201ENST00000371691 2410 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
TM9SF3Q9HD45 TEAD2-202ENST00000377214 2440 ntAPPRIS ALT1 TSL 2 BASIC18.37■□□□□ 0.53
TM9SF3Q9HD45 GNB1L-203ENST00000405009 1076 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
TM9SF3Q9HD45 ITM2C-204ENST00000409704 1106 ntTSL 5 BASIC18.37■□□□□ 0.53
TM9SF3Q9HD45 AC004975.2-201ENST00000442017 565 ntTSL 5 BASIC18.37■□□□□ 0.53
TM9SF3Q9HD45 AP001625.2-201ENST00000442605 575 ntTSL 2 BASIC18.37■□□□□ 0.53
TM9SF3Q9HD45 PCAT7-201ENST00000452148 1164 ntTSL 2 BASIC18.37■□□□□ 0.53
TM9SF3Q9HD45 CCNG1-208ENST00000510664 994 ntTSL 5 BASIC18.37■□□□□ 0.53
TM9SF3Q9HD45 FOSL1P1-201ENST00000511041 816 ntBASIC18.37■□□□□ 0.53
TM9SF3Q9HD45 AC091304.2-201ENST00000564639 760 ntBASIC18.37■□□□□ 0.53
TM9SF3Q9HD45 AC090616.6-201ENST00000582640 721 ntBASIC18.37■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 29.6 ms