Protein–RNA interactions for Protein: Q96AY4

TTC28, Tetratricopeptide repeat protein 28, humanhuman

Predictions only

Length 2,481 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28Q96AY4 FAM212B-203ENST00000444059 1423 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
TTC28Q96AY4 INPP5J-204ENST00000402238 1564 ntTSL 2 BASIC18.61■□□□□ 0.57
TTC28Q96AY4 AC008691.1-203ENST00000515337 1580 ntTSL 2 BASIC18.61■□□□□ 0.57
TTC28Q96AY4 BTBD9-205ENST00000419706 2034 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
TTC28Q96AY4 SMG7-AS1-201ENST00000421703 2220 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
TTC28Q96AY4 SLC35E4-202ENST00000406566 2081 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
TTC28Q96AY4 PRRT1-201ENST00000211413 1909 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
TTC28Q96AY4 FAM87B-201ENST00000326734 1947 ntTSL 2 BASIC18.61■□□□□ 0.57
TTC28Q96AY4 GAS2L1P1-201ENST00000420145 1480 ntBASIC18.61■□□□□ 0.57
TTC28Q96AY4 HNRNPH3-202ENST00000354695 1332 ntAPPRIS ALT1 TSL 1 (best) BASIC18.61■□□□□ 0.57
TTC28Q96AY4 APTR-204ENST00000440088 2029 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
TTC28Q96AY4 CAPZB-204ENST00000375144 1568 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
TTC28Q96AY4 AC005906.2-207ENST00000639005 1580 ntTSL 5 BASIC18.61■□□□□ 0.57
TTC28Q96AY4 HRAS-204ENST00000417302 1233 ntTSL 5 BASIC18.61■□□□□ 0.57
TTC28Q96AY4 AC073283.1-201ENST00000421759 860 ntTSL 3 BASIC18.61■□□□□ 0.57
TTC28Q96AY4 ELP6-205ENST00000439305 880 ntTSL 2 BASIC18.61■□□□□ 0.57
TTC28Q96AY4 RBM14-RBM4-203ENST00000500635 829 ntTSL 2 BASIC18.61■□□□□ 0.57
TTC28Q96AY4 AC073592.4-201ENST00000623827 446 ntBASIC18.61■□□□□ 0.57
TTC28Q96AY4 PGM5P2-202ENST00000637225 1043 ntBASIC18.61■□□□□ 0.57
TTC28Q96AY4 TMEM91-209ENST00000539627 1843 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
TTC28Q96AY4 TMUB2-213ENST00000589856 1505 ntTSL 2 BASIC18.61■□□□□ 0.57
TTC28Q96AY4 CHODL-201ENST00000299295 2548 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
TTC28Q96AY4 SLC39A5-209ENST00000454355 1968 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
TTC28Q96AY4 IRF7-207ENST00000525445 1588 ntTSL 5 BASIC18.6■□□□□ 0.57
TTC28Q96AY4 RNF39-201ENST00000244360 2206 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
TTC28Q96AY4 CHTOP-207ENST00000614256 1840 ntTSL 3 BASIC18.6■□□□□ 0.57
TTC28Q96AY4 P2RY6-210ENST00000542092 1674 ntAPPRIS P1 TSL 2 BASIC18.6■□□□□ 0.57
TTC28Q96AY4 RFXANK-203ENST00000407360 1212 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
TTC28Q96AY4 CIRBP-204ENST00000585630 870 ntAPPRIS P3 TSL 3 BASIC18.6■□□□□ 0.57
TTC28Q96AY4 AL353135.1-201ENST00000606729 504 ntBASIC18.6■□□□□ 0.57
TTC28Q96AY4 IFIH1-202ENST00000421365 1617 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
TTC28Q96AY4 HOXD1-201ENST00000331462 1975 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
TTC28Q96AY4 ZGPAT-201ENST00000328969 1945 ntTSL 2 BASIC18.6■□□□□ 0.57
TTC28Q96AY4 GOSR2-210ENST00000576910 1891 ntAPPRIS ALT1 TSL 5 BASIC18.6■□□□□ 0.57
TTC28Q96AY4 AC134772.1-202ENST00000435578 549 ntTSL 4 BASIC18.6■□□□□ 0.57
TTC28Q96AY4 TMEM176B-205ENST00000450753 1006 ntTSL 2 BASIC18.6■□□□□ 0.57
TTC28Q96AY4 ZNF655-218ENST00000454654 571 ntTSL 4 BASIC18.6■□□□□ 0.57
TTC28Q96AY4 AL121820.2-201ENST00000556301 279 ntTSL 2 BASIC18.6■□□□□ 0.57
TTC28Q96AY4 AC005593.1-201ENST00000624894 515 ntBASIC18.6■□□□□ 0.57
TTC28Q96AY4 SCLT1-204ENST00000503215 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
TTC28Q96AY4 MYBL2-202ENST00000396863 2704 ntTSL 2 BASIC18.6■□□□□ 0.57
TTC28Q96AY4 CYP51A1P2-201ENST00000419457 1499 ntBASIC18.6■□□□□ 0.57
TTC28Q96AY4 SLC2A14-214ENST00000542505 1650 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
TTC28Q96AY4 GPAA1-201ENST00000355091 2078 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
TTC28Q96AY4 MYB-221ENST00000527615 2381 ntTSL 5 BASIC18.59■□□□□ 0.57
TTC28Q96AY4 GOSR2-201ENST00000225567 1245 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
TTC28Q96AY4 C16orf92-201ENST00000300575 895 ntAPPRIS P2 TSL 1 (best) BASIC18.59■□□□□ 0.57
TTC28Q96AY4 METTL26-202ENST00000338401 544 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
TTC28Q96AY4 HYAL1-206ENST00000447605 666 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
TTC28Q96AY4 AC083973.1-206ENST00000518213 815 ntTSL 3 BASIC18.59■□□□□ 0.57
TTC28Q96AY4 PPP2R3B-202ENST00000390665 2151 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
TTC28Q96AY4 MEDAG-201ENST00000380482 2374 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
TTC28Q96AY4 LINC01521-201ENST00000504184 1943 ntBASIC18.59■□□□□ 0.57
TTC28Q96AY4 CRTC2-203ENST00000368633 2644 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
TTC28Q96AY4 TRAM2-AS1-204ENST00000606714 2453 ntTSL 2 BASIC18.59■□□□□ 0.57
TTC28Q96AY4 MAN1B1-AS1-201ENST00000596585 1872 ntBASIC18.59■□□□□ 0.57
TTC28Q96AY4 JAM2-202ENST00000400532 1757 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
TTC28Q96AY4 METTL21A-208ENST00000448007 1770 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
TTC28Q96AY4 COPS8-202ENST00000392008 1654 ntTSL 2 BASIC18.59■□□□□ 0.57
TTC28Q96AY4 MRPL43-201ENST00000299179 747 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
TTC28Q96AY4 RPS19BP1-201ENST00000334678 927 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
TTC28Q96AY4 IGHV3-7-201ENST00000390598 430 ntAPPRIS P1 BASIC18.59■□□□□ 0.57
TTC28Q96AY4 FAM58CP-201ENST00000435741 640 ntBASIC18.59■□□□□ 0.57
TTC28Q96AY4 AC022509.3-202ENST00000545819 566 ntTSL 3 BASIC18.59■□□□□ 0.57
TTC28Q96AY4 NAT14-202ENST00000587400 416 ntTSL 5 BASIC18.59■□□□□ 0.57
TTC28Q96AY4 SYNGR4-204ENST00000601610 859 ntTSL 3 BASIC18.59■□□□□ 0.57
TTC28Q96AY4 RGS3-202ENST00000342620 1714 ntTSL 5 BASIC18.59■□□□□ 0.57
TTC28Q96AY4 GRM6-202ENST00000517717 2673 ntAPPRIS P1 TSL 5 BASIC18.58■□□□□ 0.57
TTC28Q96AY4 CYP51A1P1-201ENST00000492267 1507 ntBASIC18.58■□□□□ 0.57
TTC28Q96AY4 AL512353.2-201ENST00000448759 1962 ntBASIC18.58■□□□□ 0.57
TTC28Q96AY4 TIMM17B-202ENST00000396779 1099 ntTSL 5 BASIC18.58■□□□□ 0.57
TTC28Q96AY4 CENPM-205ENST00000404067 905 ntTSL 3 BASIC18.58■□□□□ 0.57
TTC28Q96AY4 GOLGA6L11P-201ENST00000417252 1298 ntBASIC18.58■□□□□ 0.57
TTC28Q96AY4 FAM192A-212ENST00000566077 1066 ntTSL 3 BASIC18.58■□□□□ 0.57
TTC28Q96AY4 CBWD1-202ENST00000356521 1706 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
TTC28Q96AY4 TMEM44-202ENST00000347147 2245 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
TTC28Q96AY4 PDLIM3-202ENST00000284770 1766 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
TTC28Q96AY4 GAL3ST1-202ENST00000401975 1791 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
TTC28Q96AY4 STAC3-201ENST00000332782 1656 ntAPPRIS P1 TSL 2 BASIC18.58■□□□□ 0.56
TTC28Q96AY4 HSD11B1L-223ENST00000616276 1580 ntAPPRIS ALT2 TSL 5 BASIC18.58■□□□□ 0.56
TTC28Q96AY4 SLC2A8-203ENST00000373371 2172 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
TTC28Q96AY4 FBXW11-203ENST00000393802 2181 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
TTC28Q96AY4 CLPP-201ENST00000245816 1155 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
TTC28Q96AY4 HOXD8-203ENST00000450510 1268 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.56
TTC28Q96AY4 NDUFS7-216ENST00000546283 1060 ntTSL 2 BASIC18.58■□□□□ 0.56
TTC28Q96AY4 TVP23B-206ENST00000574226 1080 ntAPPRIS ALT1 TSL 1 (best) BASIC18.58■□□□□ 0.56
TTC28Q96AY4 AC002398.2-201ENST00000587767 660 ntTSL 5 BASIC18.58■□□□□ 0.56
TTC28Q96AY4 GOLGA2-215ENST00000639983 1038 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
TTC28Q96AY4 RAP1B-204ENST00000393436 2049 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
TTC28Q96AY4 E4F1-206ENST00000565090 2028 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
TTC28Q96AY4 KCNH2-201ENST00000262186 4286 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
TTC28Q96AY4 TRIP6-201ENST00000200457 1942 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
TTC28Q96AY4 IL17RE-201ENST00000383814 2704 ntAPPRIS P2 TSL 1 (best) BASIC18.57■□□□□ 0.56
TTC28Q96AY4 FEM1AP4-201ENST00000443167 1987 ntBASIC18.57■□□□□ 0.56
TTC28Q96AY4 UGP2-201ENST00000337130 2338 ntAPPRIS P2 TSL 1 (best) BASIC18.57■□□□□ 0.56
TTC28Q96AY4 AC010616.1-201ENST00000597630 2078 ntAPPRIS P1 TSL 5 BASIC18.57■□□□□ 0.56
TTC28Q96AY4 PIGZ-204ENST00000443835 675 ntTSL 4 BASIC18.57■□□□□ 0.56
TTC28Q96AY4 KRT19P2-202ENST00000557173 1012 ntBASIC18.57■□□□□ 0.56
TTC28Q96AY4 SPATA8-AS1-201ENST00000558722 465 ntTSL 3 BASIC18.57■□□□□ 0.56
TTC28Q96AY4 CD177-202ENST00000607855 536 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 23.2 ms