Protein–RNA interactions for Protein: Q969F9

HPS3, Hermansky-Pudlak syndrome 3 protein, humanhuman

Predictions only

Length 1,004 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HPS3Q969F9 SERPINE2-201ENST00000258405 2195 ntAPPRIS P3 TSL 1 (best) BASIC20.41■□□□□ 0.86
HPS3Q969F9 MCCC1-214ENST00000610757 2410 ntTSL 5 BASIC20.41■□□□□ 0.86
HPS3Q969F9 KMT2E-207ENST00000476671 2523 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
HPS3Q969F9 HIC1-202ENST00000399849 3156 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
HPS3Q969F9 USP48-204ENST00000400301 4309 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
HPS3Q969F9 MPG-201ENST00000219431 1193 ntAPPRIS P4 TSL 3 BASIC20.4■□□□□ 0.86
HPS3Q969F9 ANKRD10-201ENST00000267339 2495 ntAPPRIS P1 TSL 2 BASIC20.4■□□□□ 0.86
HPS3Q969F9 HEXIM2-201ENST00000307275 1528 ntAPPRIS P1 TSL 2 BASIC20.4■□□□□ 0.86
HPS3Q969F9 LTBP3-202ENST00000322147 4046 ntAPPRIS P3 TSL 1 (best) BASIC20.4■□□□□ 0.86
HPS3Q969F9 CARMIL2-201ENST00000334583 4687 ntAPPRIS P3 TSL 1 (best) BASIC20.4■□□□□ 0.86
HPS3Q969F9 EIF3B-201ENST00000360876 3055 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
HPS3Q969F9 MBD1-206ENST00000382948 2434 ntAPPRIS P3 TSL 2 BASIC20.4■□□□□ 0.86
HPS3Q969F9 TMC6-203ENST00000392467 2833 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
HPS3Q969F9 AC211429.1-201ENST00000415277 523 ntBASIC20.4■□□□□ 0.86
HPS3Q969F9 TRIM73-205ENST00000450434 1425 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
HPS3Q969F9 AC108025.1-201ENST00000453678 1058 ntTSL 5 BASIC20.4■□□□□ 0.86
HPS3Q969F9 SEC1P-202ENST00000473944 940 ntBASIC20.4■□□□□ 0.86
HPS3Q969F9 SDR39U1-202ENST00000538105 1041 ntTSL 2 BASIC20.4■□□□□ 0.86
HPS3Q969F9 GCHFR-202ENST00000558467 785 ntTSL 2 BASIC20.4■□□□□ 0.86
HPS3Q969F9 COQ9-210ENST00000567072 1482 ntTSL 3 BASIC20.4■□□□□ 0.86
HPS3Q969F9 AL138966.2-201ENST00000621997 464 ntBASIC20.4■□□□□ 0.86
HPS3Q969F9 KMT5B-201ENST00000304363 5837 ntAPPRIS P1 TSL 5 BASIC20.4■□□□□ 0.86
HPS3Q969F9 FBXO31-201ENST00000311635 5934 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
HPS3Q969F9 AC118553.2-203ENST00000639037 2590 ntAPPRIS P5 TSL 5 BASIC20.4■□□□□ 0.86
HPS3Q969F9 TP53BP2-202ENST00000391878 4741 ntTSL 1 (best) BASIC20.39■□□□□ 0.86
HPS3Q969F9 NRBP1-203ENST00000379852 2163 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
HPS3Q969F9 DDX42-202ENST00000389924 3939 ntAPPRIS P1 TSL 5 BASIC20.39■□□□□ 0.86
HPS3Q969F9 RGS20-203ENST00000344277 1667 ntTSL 1 (best) BASIC20.39■□□□□ 0.86
HPS3Q969F9 STARD7-AS1-202ENST00000446816 1527 ntTSL 2 BASIC20.39■□□□□ 0.85
HPS3Q969F9 AC008393.1-201ENST00000499601 1454 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
HPS3Q969F9 TDRKH-207ENST00000458431 2768 ntAPPRIS P2 TSL 1 (best) BASIC20.39■□□□□ 0.85
HPS3Q969F9 UPK3B-201ENST00000257632 1296 ntAPPRIS P5 TSL 2 BASIC20.39■□□□□ 0.85
HPS3Q969F9 MED4-202ENST00000378586 931 ntAPPRIS ALT2 TSL 2 BASIC20.39■□□□□ 0.85
HPS3Q969F9 ICAM1-202ENST00000423829 1296 ntTSL 2 BASIC20.39■□□□□ 0.85
HPS3Q969F9 AC037459.1-202ENST00000430850 531 ntAPPRIS P1 TSL 4 BASIC20.39■□□□□ 0.85
HPS3Q969F9 MNX1-AS1-201ENST00000480284 1041 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
HPS3Q969F9 C7orf49-209ENST00000483029 596 ntTSL 2 BASIC20.39■□□□□ 0.85
HPS3Q969F9 C17orf62-230ENST00000583617 866 ntTSL 5 BASIC20.39■□□□□ 0.85
HPS3Q969F9 KLK7-206ENST00000597707 1054 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
HPS3Q969F9 AC064834.1-201ENST00000606986 503 ntTSL 3 BASIC20.39■□□□□ 0.85
HPS3Q969F9 PITPNB-211ENST00000634017 1017 ntAPPRIS ALT1 TSL 2 BASIC20.39■□□□□ 0.85
HPS3Q969F9 NOC2LP1-202ENST00000452600 2235 ntBASIC20.39■□□□□ 0.85
HPS3Q969F9 POC1B-GALNT4-201ENST00000547474 2207 ntTSL 2 BASIC20.39■□□□□ 0.85
HPS3Q969F9 PNMA8B-202ENST00000599531 5308 ntAPPRIS P1 BASIC20.39■□□□□ 0.85
HPS3Q969F9 KMT2B-201ENST00000420124 8469 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
HPS3Q969F9 THAP3-203ENST00000377627 2053 ntAPPRIS P3 TSL 2 BASIC20.39■□□□□ 0.85
HPS3Q969F9 SLC37A2-203ENST00000403796 2910 ntAPPRIS ALT1 TSL 2 BASIC20.39■□□□□ 0.85
HPS3Q969F9 FAM213B-205ENST00000444521 2827 ntAPPRIS ALT2 TSL 2 BASIC20.39■□□□□ 0.85
HPS3Q969F9 MAPRE3-201ENST00000233121 1892 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
HPS3Q969F9 AC005332.8-201ENST00000622750 2735 ntBASIC20.39■□□□□ 0.85
HPS3Q969F9 SREBF2-209ENST00000612482 5365 ntTSL 5 BASIC20.39■□□□□ 0.85
HPS3Q969F9 AC063977.6-201ENST00000600074 1763 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
HPS3Q969F9 RPL32-202ENST00000396953 1734 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
HPS3Q969F9 AC087500.1-202ENST00000571689 1715 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
HPS3Q969F9 CABIN1-202ENST00000337989 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC20.38■□□□□ 0.85
HPS3Q969F9 FSCN2-201ENST00000334850 1551 ntTSL 5 BASIC20.38■□□□□ 0.85
HPS3Q969F9 ABO-203ENST00000611156 1577 ntAPPRIS ALT2 TSL 5 BASIC20.38■□□□□ 0.85
HPS3Q969F9 ERCC2-205ENST00000485403 1538 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
HPS3Q969F9 TAX1BP3-201ENST00000225525 1377 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
HPS3Q969F9 DCAF4-201ENST00000353777 1940 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
HPS3Q969F9 IL1R1-205ENST00000410023 5143 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
HPS3Q969F9 MCF2L-207ENST00000397024 490 ntTSL 5 BASIC20.38■□□□□ 0.85
HPS3Q969F9 AC104596.1-202ENST00000507486 759 ntTSL 3 BASIC20.38■□□□□ 0.85
HPS3Q969F9 SNCB-205ENST00000510387 730 ntAPPRIS P1 TSL 2 BASIC20.38■□□□□ 0.85
HPS3Q969F9 NDUFB10-202ENST00000543683 830 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
HPS3Q969F9 AC104390.1-201ENST00000555663 520 ntBASIC20.38■□□□□ 0.85
HPS3Q969F9 ETFA-216ENST00000560726 942 ntTSL 3 BASIC20.38■□□□□ 0.85
HPS3Q969F9 CLDND2-203ENST00000601435 575 ntAPPRIS P1 TSL 3 BASIC20.38■□□□□ 0.85
HPS3Q969F9 AC097493.4-201ENST00000641197 219 ntBASIC20.38■□□□□ 0.85
HPS3Q969F9 FBXO44-201ENST00000251546 1896 ntTSL 2 BASIC20.38■□□□□ 0.85
HPS3Q969F9 ZNF419-207ENST00000442920 1857 ntAPPRIS ALT2 TSL 2 BASIC20.38■□□□□ 0.85
HPS3Q969F9 ZNF205-206ENST00000620094 2309 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
HPS3Q969F9 CD1E-205ENST00000368160 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC20.38■□□□□ 0.85
HPS3Q969F9 MLLT1-201ENST00000252674 4507 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
HPS3Q969F9 NFIX-202ENST00000360105 5459 ntTSL 5 BASIC20.38■□□□□ 0.85
HPS3Q969F9 REXO1L9P-201ENST00000604264 2108 ntBASIC20.38■□□□□ 0.85
HPS3Q969F9 STRA6-209ENST00000563965 2565 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
HPS3Q969F9 PLPP4-202ENST00000398250 1521 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
HPS3Q969F9 NCF1B-201ENST00000423083 1516 ntTSL 2 BASIC20.37■□□□□ 0.85
HPS3Q969F9 LARGE2-201ENST00000325468 2522 ntAPPRIS P3 TSL 1 (best) BASIC20.37■□□□□ 0.85
HPS3Q969F9 LMNA-207ENST00000368301 2461 ntTSL 2 BASIC20.37■□□□□ 0.85
HPS3Q969F9 NDUFA10-214ENST00000620965 1489 ntAPPRIS ALT1 TSL 5 BASIC20.37■□□□□ 0.85
HPS3Q969F9 SLC44A3-201ENST00000271227 2388 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
HPS3Q969F9 WNT5B-203ENST00000537031 1437 ntAPPRIS P1 TSL 2 BASIC20.37■□□□□ 0.85
HPS3Q969F9 FLYWCH1P1-201ENST00000460917 1874 ntBASIC20.37■□□□□ 0.85
HPS3Q969F9 VIPR1-201ENST00000325123 2773 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
HPS3Q969F9 ADAM33-203ENST00000379861 3674 ntAPPRIS ALT2 TSL 1 (best) BASIC20.37■□□□□ 0.85
HPS3Q969F9 PLCL2-204ENST00000615277 4147 ntAPPRIS ALT2 TSL 1 (best) BASIC20.37■□□□□ 0.85
HPS3Q969F9 DTX2-211ENST00000446600 2281 ntTSL 2 BASIC20.37■□□□□ 0.85
HPS3Q969F9 SSUH2-202ENST00000341795 1799 ntAPPRIS P3 TSL 1 (best) BASIC20.37■□□□□ 0.85
HPS3Q969F9 GAMT-202ENST00000447102 1769 ntTSL 2 BASIC20.37■□□□□ 0.85
HPS3Q969F9 BIRC7-202ENST00000342412 1302 ntAPPRIS ALT2 TSL 1 (best) BASIC20.37■□□□□ 0.85
HPS3Q969F9 HES7-201ENST00000317814 678 ntAPPRIS P3 TSL 1 (best) BASIC20.37■□□□□ 0.85
HPS3Q969F9 AL162457.2-201ENST00000447909 937 ntTSL 3 BASIC20.37■□□□□ 0.85
HPS3Q969F9 ZNF706-206ENST00000519744 785 ntTSL 3 BASIC20.37■□□□□ 0.85
HPS3Q969F9 FOSL1-203ENST00000531493 1200 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
HPS3Q969F9 C14orf144-201ENST00000553757 537 ntTSL 4 BASIC20.37■□□□□ 0.85
HPS3Q969F9 CMTM3-210ENST00000565666 769 ntTSL 3 BASIC20.37■□□□□ 0.85
HPS3Q969F9 TPSB2-201ENST00000606293 1165 ntAPPRIS ALT2 TSL 1 (best) BASIC20.37■□□□□ 0.85
HPS3Q969F9 TCP11-228ENST00000611141 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC20.37■□□□□ 0.85
Retrieved 100 of 98,524 protein–RNA pairs in 24.8 ms