Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 AC073111.4-202ENST00000486297 585 ntTSL 4 BASIC18.46■□□□□ 0.55
HDDC3Q8N4P3 CMTM1-213ENST00000529506 581 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
HDDC3Q8N4P3 AL662844.1-201ENST00000546340 181 ntBASIC18.46■□□□□ 0.55
HDDC3Q8N4P3 TPSP2-201ENST00000561760 610 ntBASIC18.46■□□□□ 0.55
HDDC3Q8N4P3 ZFPM1-205ENST00000569086 563 ntTSL 2 BASIC18.46■□□□□ 0.55
HDDC3Q8N4P3 TEN1-204ENST00000588202 862 ntTSL 3 BASIC18.46■□□□□ 0.55
HDDC3Q8N4P3 AL121832.1-201ENST00000615180 677 ntTSL 3 BASIC18.46■□□□□ 0.55
HDDC3Q8N4P3 KLF13-201ENST00000307145 6825 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
HDDC3Q8N4P3 RPL3-201ENST00000216146 1442 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
HDDC3Q8N4P3 APBB1-207ENST00000529519 1442 ntTSL 5 BASIC18.46■□□□□ 0.55
HDDC3Q8N4P3 CORO6-212ENST00000584969 1416 ntAPPRIS ALT1 TSL 5 BASIC18.46■□□□□ 0.55
HDDC3Q8N4P3 MAPT-209ENST00000446361 5345 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
HDDC3Q8N4P3 EPN3-216ENST00000537145 2223 ntTSL 5 BASIC18.46■□□□□ 0.55
HDDC3Q8N4P3 TMEM222-201ENST00000374076 1599 ntAPPRIS P2 TSL 1 (best) BASIC18.46■□□□□ 0.55
HDDC3Q8N4P3 ERLIN1-203ENST00000421367 5792 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
HDDC3Q8N4P3 ACBD4-207ENST00000586346 1579 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
HDDC3Q8N4P3 CBLN2-201ENST00000269503 2945 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
HDDC3Q8N4P3 WNT7B-202ENST00000409496 2285 ntAPPRIS ALT1 TSL 2 BASIC18.46■□□□□ 0.54
HDDC3Q8N4P3 SGO1-209ENST00000442720 2266 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.54
HDDC3Q8N4P3 STXBP2-201ENST00000221283 1876 ntAPPRIS P3 TSL 1 (best) BASIC18.46■□□□□ 0.54
HDDC3Q8N4P3 TRIM13-206ENST00000457662 1489 ntAPPRIS P3 TSL 1 (best) BASIC18.46■□□□□ 0.54
HDDC3Q8N4P3 MRGPRF-AS1-201ENST00000538407 1490 ntTSL 1 (best) BASIC18.46■□□□□ 0.54
HDDC3Q8N4P3 ACD-215ENST00000620761 1483 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.54
HDDC3Q8N4P3 FBLN7-202ENST00000331203 2301 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
HDDC3Q8N4P3 FAR2P2-204ENST00000424873 2070 ntTSL 2 BASIC18.45■□□□□ 0.54
HDDC3Q8N4P3 PCSK7-201ENST00000320934 4649 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
HDDC3Q8N4P3 FSTL1-201ENST00000295633 5943 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
HDDC3Q8N4P3 FCN3-201ENST00000270879 1030 ntAPPRIS P4 TSL 1 (best) BASIC18.45■□□□□ 0.54
HDDC3Q8N4P3 TMEM89-201ENST00000330862 662 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
HDDC3Q8N4P3 MAL-203ENST00000353004 873 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
HDDC3Q8N4P3 FCN3-202ENST00000354982 997 ntAPPRIS ALT2 TSL 1 (best) BASIC18.45■□□□□ 0.54
HDDC3Q8N4P3 FAM239B-201ENST00000381106 1099 ntTSL 2 BASIC18.45■□□□□ 0.54
HDDC3Q8N4P3 ZFAND2B-207ENST00000409412 569 ntTSL 2 BASIC18.45■□□□□ 0.54
HDDC3Q8N4P3 PCAT7-201ENST00000452148 1164 ntTSL 2 BASIC18.45■□□□□ 0.54
HDDC3Q8N4P3 AL137026.1-202ENST00000452578 1089 ntTSL 2 BASIC18.45■□□□□ 0.54
HDDC3Q8N4P3 LBX1-AS1-204ENST00000456391 421 ntTSL 5 BASIC18.45■□□□□ 0.54
HDDC3Q8N4P3 TOB2P1-201ENST00000469761 992 ntBASIC18.45■□□□□ 0.54
HDDC3Q8N4P3 FOSL1P1-201ENST00000511041 816 ntBASIC18.45■□□□□ 0.54
HDDC3Q8N4P3 CIB2-208ENST00000560618 804 ntTSL 2 BASIC18.45■□□□□ 0.54
HDDC3Q8N4P3 AC012615.1-201ENST00000565797 1299 ntBASIC18.45■□□□□ 0.54
HDDC3Q8N4P3 ISG15-203ENST00000624697 788 ntAPPRIS ALT2 TSL 3 BASIC18.45■□□□□ 0.54
HDDC3Q8N4P3 STMN3-201ENST00000370053 2255 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
HDDC3Q8N4P3 LINC01700-201ENST00000433952 1598 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
HDDC3Q8N4P3 SYT17-207ENST00000568115 1721 ntTSL 5 BASIC18.45■□□□□ 0.54
HDDC3Q8N4P3 RPP25-201ENST00000322177 3049 ntAPPRIS P1 BASIC18.45■□□□□ 0.54
HDDC3Q8N4P3 ESPN-205ENST00000461727 1869 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
HDDC3Q8N4P3 GUCA1A-201ENST00000053469 1874 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
HDDC3Q8N4P3 ADAP1-216ENST00000539900 2178 ntTSL 2 BASIC18.45■□□□□ 0.54
HDDC3Q8N4P3 DISP3-202ENST00000304391 1495 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
HDDC3Q8N4P3 ENDOV-225ENST00000522751 1475 ntTSL 5 BASIC18.45■□□□□ 0.54
HDDC3Q8N4P3 LARGE2-208ENST00000531526 2528 ntAPPRIS P3 TSL 2 BASIC18.45■□□□□ 0.54
HDDC3Q8N4P3 CLIP2-201ENST00000223398 5563 ntAPPRIS P1 TSL 5 BASIC18.44■□□□□ 0.54
HDDC3Q8N4P3 TPCN2-208ENST00000637342 2856 ntTSL 5 BASIC18.44■□□□□ 0.54
HDDC3Q8N4P3 TM7SF3-201ENST00000343028 2709 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
HDDC3Q8N4P3 BIN2-210ENST00000615107 2255 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
HDDC3Q8N4P3 P2RX5-203ENST00000547178 1998 ntAPPRIS ALT2 TSL 1 (best) BASIC18.44■□□□□ 0.54
HDDC3Q8N4P3 DLG3-202ENST00000374355 5074 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
HDDC3Q8N4P3 PCDH1-201ENST00000287008 4793 ntAPPRIS P3 TSL 5 BASIC18.44■□□□□ 0.54
HDDC3Q8N4P3 PCDHA4-201ENST00000378125 2328 ntTSL 5 BASIC18.44■□□□□ 0.54
HDDC3Q8N4P3 CARHSP1-201ENST00000311052 746 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
HDDC3Q8N4P3 TRAPPC3-202ENST00000373162 1056 ntTSL 2 BASIC18.44■□□□□ 0.54
HDDC3Q8N4P3 KCNAB2-205ENST00000378092 1202 ntAPPRIS ALT1 TSL 5 BASIC18.44■□□□□ 0.54
HDDC3Q8N4P3 GNB1L-203ENST00000405009 1076 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
HDDC3Q8N4P3 DARS-AS1-202ENST00000419808 772 ntTSL 5 BASIC18.44■□□□□ 0.54
HDDC3Q8N4P3 PPOX-214ENST00000535223 664 ntTSL 3 BASIC18.44■□□□□ 0.54
HDDC3Q8N4P3 EFCAB11-211ENST00000556609 568 ntTSL 3 BASIC18.44■□□□□ 0.54
HDDC3Q8N4P3 BRICD5-203ENST00000566018 555 ntTSL 2 BASIC18.44■□□□□ 0.54
HDDC3Q8N4P3 TK1-205ENST00000590862 642 ntTSL 3 BASIC18.44■□□□□ 0.54
HDDC3Q8N4P3 GNAS-AS1-203ENST00000598163 548 ntTSL 4 BASIC18.44■□□□□ 0.54
HDDC3Q8N4P3 AC104692.2-201ENST00000603054 253 ntBASIC18.44■□□□□ 0.54
HDDC3Q8N4P3 PMEPA1-202ENST00000341744 4845 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
HDDC3Q8N4P3 HOXB9-201ENST00000311177 2581 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
HDDC3Q8N4P3 ACVR1B-205ENST00000541224 1791 ntTSL 2 BASIC18.44■□□□□ 0.54
HDDC3Q8N4P3 MEPCE-202ENST00000414441 2261 ntTSL 2 BASIC18.44■□□□□ 0.54
HDDC3Q8N4P3 LINC00960-201ENST00000463183 1333 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
HDDC3Q8N4P3 SUFU-201ENST00000369899 1839 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
HDDC3Q8N4P3 MED15P9-202ENST00000427638 1841 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
HDDC3Q8N4P3 CCNL2-201ENST00000400809 2305 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
HDDC3Q8N4P3 SNX17-201ENST00000233575 2044 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
HDDC3Q8N4P3 SAMD11-211ENST00000616125 2230 ntAPPRIS ALT2 TSL 5 BASIC18.43■□□□□ 0.54
HDDC3Q8N4P3 SNAI3-AS1-205ENST00000568633 2096 ntBASIC18.43■□□□□ 0.54
HDDC3Q8N4P3 CHRNA10-201ENST00000250699 1945 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
HDDC3Q8N4P3 COL4A3BP-201ENST00000261415 2262 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
HDDC3Q8N4P3 EIF2B4-210ENST00000493344 1949 ntTSL 5 BASIC18.43■□□□□ 0.54
HDDC3Q8N4P3 EYA2-210ENST00000611592 2612 ntTSL 5 BASIC18.43■□□□□ 0.54
HDDC3Q8N4P3 PTN-201ENST00000348225 1614 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
HDDC3Q8N4P3 ASL-205ENST00000395332 1622 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
HDDC3Q8N4P3 PHPT1-202ENST00000371661 985 ntTSL 5 BASIC18.43■□□□□ 0.54
HDDC3Q8N4P3 RPL36-202ENST00000394580 556 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
HDDC3Q8N4P3 CAPG-203ENST00000409670 1183 ntAPPRIS P1 TSL 5 BASIC18.43■□□□□ 0.54
HDDC3Q8N4P3 PRSS42-201ENST00000429665 882 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
HDDC3Q8N4P3 LINC01237-203ENST00000430555 843 ntTSL 4 BASIC18.43■□□□□ 0.54
HDDC3Q8N4P3 AC079781.3-201ENST00000449110 356 ntBASIC18.43■□□□□ 0.54
HDDC3Q8N4P3 KRT18P31-201ENST00000506277 1292 ntBASIC18.43■□□□□ 0.54
HDDC3Q8N4P3 SRSF1-209ENST00000585096 568 ntTSL 4 BASIC18.43■□□□□ 0.54
HDDC3Q8N4P3 EVL-202ENST00000402714 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC18.43■□□□□ 0.54
HDDC3Q8N4P3 GATA5-201ENST00000252997 2595 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
HDDC3Q8N4P3 TSPAN17-202ENST00000310032 2550 ntTSL 5 BASIC18.43■□□□□ 0.54
HDDC3Q8N4P3 BST1-201ENST00000265016 1480 ntAPPRIS P2 TSL 1 (best) BASIC18.43■□□□□ 0.54
HDDC3Q8N4P3 SLC2A14-214ENST00000542505 1650 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 20.3 ms