Protein–RNA interactions for Protein: Q8IWP9

CCDC28A, Coiled-coil domain-containing protein 28A, humanhuman

Predictions only

Length 274 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28AQ8IWP9 AC099063.4-201ENST00000641099 1602 ntBASIC15.41■□□□□ 0.06
CCDC28AQ8IWP9 C6orf106-202ENST00000374023 4418 ntAPPRIS P4 TSL 1 (best) BASIC15.41■□□□□ 0.06
CCDC28AQ8IWP9 NTRK3-202ENST00000355254 2938 ntAPPRIS ALT2 TSL 5 BASIC15.41■□□□□ 0.06
CCDC28AQ8IWP9 PCID2-202ENST00000337344 1898 ntAPPRIS P1 TSL 2 BASIC15.41■□□□□ 0.06
CCDC28AQ8IWP9 LENG8-209ENST00000616932 2825 ntAPPRIS ALT2 TSL 5 BASIC15.41■□□□□ 0.06
CCDC28AQ8IWP9 MTA1-202ENST00000405646 2709 ntAPPRIS ALT2 TSL 5 BASIC15.41■□□□□ 0.06
CCDC28AQ8IWP9 LIN54-204ENST00000505397 2742 ntAPPRIS P1 TSL 5 BASIC15.41■□□□□ 0.06
CCDC28AQ8IWP9 AC138649.1-201ENST00000619611 1449 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
CCDC28AQ8IWP9 ST6GAL2-203ENST00000409087 1657 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
CCDC28AQ8IWP9 TRPC4AP-202ENST00000451813 3138 ntTSL 2 BASIC15.41■□□□□ 0.06
CCDC28AQ8IWP9 RAB1A-202ENST00000409751 1333 ntTSL 5 BASIC15.41■□□□□ 0.06
CCDC28AQ8IWP9 GSPT1-202ENST00000434724 7105 ntAPPRIS P4 TSL 1 (best) BASIC15.41■□□□□ 0.06
CCDC28AQ8IWP9 CTNNBIP1-203ENST00000377263 3000 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
CCDC28AQ8IWP9 ARID4B-202ENST00000349213 5811 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
CCDC28AQ8IWP9 GPS1-201ENST00000306823 1842 ntAPPRIS P3 TSL 1 (best) BASIC15.4■□□□□ 0.06
CCDC28AQ8IWP9 RBPJ-205ENST00000355476 5990 ntAPPRIS P3 TSL 1 (best) BASIC15.4■□□□□ 0.06
CCDC28AQ8IWP9 TSC2-202ENST00000350773 5532 ntAPPRIS ALT2 TSL 1 (best) BASIC15.4■□□□□ 0.06
CCDC28AQ8IWP9 ZNF821-211ENST00000564134 1748 ntTSL 5 BASIC15.4■□□□□ 0.06
CCDC28AQ8IWP9 SCP2-204ENST00000407246 2239 ntTSL 2 BASIC15.4■□□□□ 0.06
CCDC28AQ8IWP9 SLC27A2-201ENST00000267842 2394 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
CCDC28AQ8IWP9 AC010478.1-202ENST00000559112 2367 ntTSL 2 BASIC15.4■□□□□ 0.06
CCDC28AQ8IWP9 PDZD7-201ENST00000370215 2032 ntTSL 2 BASIC15.4■□□□□ 0.06
CCDC28AQ8IWP9 GPBAR1-204ENST00000522678 2003 ntAPPRIS P1 TSL 2 BASIC15.4■□□□□ 0.06
CCDC28AQ8IWP9 MOCS2-202ENST00000396954 1785 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
CCDC28AQ8IWP9 ZFAND2B-202ENST00000409097 1765 ntTSL 2 BASIC15.4■□□□□ 0.06
CCDC28AQ8IWP9 RELL2-207ENST00000521367 1780 ntTSL 5 BASIC15.4■□□□□ 0.06
CCDC28AQ8IWP9 HOXC9-203ENST00000508190 1505 ntAPPRIS P1 TSL 3 BASIC15.4■□□□□ 0.06
CCDC28AQ8IWP9 AC012414.1-201ENST00000556676 535 ntBASIC15.4■□□□□ 0.06
CCDC28AQ8IWP9 POLI-208ENST00000579534 6133 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
CCDC28AQ8IWP9 MMP25-201ENST00000336577 3554 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
CCDC28AQ8IWP9 TFAP2E-201ENST00000373235 2189 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
CCDC28AQ8IWP9 AC018755.2-202ENST00000429354 1926 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
CCDC28AQ8IWP9 CACNA1A-238ENST00000637276 7135 ntAPPRIS ALT2 TSL 5 BASIC15.4■□□□□ 0.06
CCDC28AQ8IWP9 ANKRD29-208ENST00000592179 3361 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
CCDC28AQ8IWP9 MAP3K9-206ENST00000555993 4449 ntAPPRIS P3 TSL 1 (best) BASIC15.4■□□□□ 0.06
CCDC28AQ8IWP9 SLC6A8-201ENST00000253122 3763 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
CCDC28AQ8IWP9 SLC6A2-209ENST00000568943 2471 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
CCDC28AQ8IWP9 CIZ1-226ENST00000629610 2855 ntAPPRIS ALT2 TSL 2 BASIC15.4■□□□□ 0.06
CCDC28AQ8IWP9 TP53INP1-201ENST00000342697 5638 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
CCDC28AQ8IWP9 SALL3-202ENST00000537592 6555 ntAPPRIS P1 TSL 5 BASIC15.4■□□□□ 0.06
CCDC28AQ8IWP9 AMZ2P1-202ENST00000430983 3425 ntTSL 2 BASIC15.4■□□□□ 0.06
CCDC28AQ8IWP9 SLC12A5-201ENST00000243964 6061 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
CCDC28AQ8IWP9 CYP2S1-201ENST00000310054 2782 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
CCDC28AQ8IWP9 ADAMTS1-201ENST00000284984 5191 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
CCDC28AQ8IWP9 LINC01270-201ENST00000371639 2281 ntTSL 2 BASIC15.4■□□□□ 0.06
CCDC28AQ8IWP9 GCK-209ENST00000616242 2260 ntTSL 5 BASIC15.4■□□□□ 0.06
CCDC28AQ8IWP9 CRAMP1-202ENST00000397412 7772 ntAPPRIS P1 TSL 5 BASIC15.4■□□□□ 0.06
CCDC28AQ8IWP9 ABHD12B-202ENST00000353130 1477 ntAPPRIS P3 TSL 1 (best) BASIC15.4■□□□□ 0.06
CCDC28AQ8IWP9 IRF3-221ENST00000598808 1468 ntTSL 5 BASIC15.4■□□□□ 0.06
CCDC28AQ8IWP9 TJP1-212ENST00000614355 6977 ntAPPRIS ALT2 TSL 5 BASIC15.4■□□□□ 0.06
CCDC28AQ8IWP9 AFTPH-202ENST00000238856 4040 ntAPPRIS P3 TSL 1 (best) BASIC15.4■□□□□ 0.06
CCDC28AQ8IWP9 SHISA6-202ENST00000409168 7262 ntAPPRIS ALT2 TSL 1 (best) BASIC15.39■□□□□ 0.05
CCDC28AQ8IWP9 VIPR1-204ENST00000438259 2427 ntTSL 2 BASIC15.39■□□□□ 0.05
CCDC28AQ8IWP9 RGS6-210ENST00000553530 5685 ntAPPRIS P3 TSL 1 (best) BASIC15.39■□□□□ 0.05
CCDC28AQ8IWP9 AC116050.2-201ENST00000612102 1779 ntBASIC15.39■□□□□ 0.05
CCDC28AQ8IWP9 CYP11A1-201ENST00000268053 1934 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
CCDC28AQ8IWP9 POLR3D-201ENST00000306433 1931 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
CCDC28AQ8IWP9 SLC34A1-204ENST00000512593 1912 ntTSL 2 BASIC15.39■□□□□ 0.05
CCDC28AQ8IWP9 CCDC106-201ENST00000308964 1546 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
CCDC28AQ8IWP9 ST3GAL3-239ENST00000545417 1667 ntTSL 5 BASIC15.39■□□□□ 0.05
CCDC28AQ8IWP9 MROH1-201ENST00000326134 5183 ntAPPRIS P3 TSL 5 BASIC15.39■□□□□ 0.05
CCDC28AQ8IWP9 MYB-203ENST00000341911 3672 ntAPPRIS ALT1 TSL 1 (best) BASIC15.39■□□□□ 0.05
CCDC28AQ8IWP9 HAGH-202ENST00000397356 2984 ntAPPRIS P3 TSL 1 (best) BASIC15.39■□□□□ 0.05
CCDC28AQ8IWP9 POU5F1P4-201ENST00000413175 1085 ntBASIC15.39■□□□□ 0.05
CCDC28AQ8IWP9 POLR2H-204ENST00000438240 994 ntTSL 3 BASIC15.39■□□□□ 0.05
CCDC28AQ8IWP9 AC005775.1-201ENST00000592413 850 ntTSL 5 BASIC15.39■□□□□ 0.05
CCDC28AQ8IWP9 ITGB2-AS1-202ENST00000441379 2282 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
CCDC28AQ8IWP9 PCDHA14-201ENST00000506751 2298 ntBASIC15.39■□□□□ 0.05
CCDC28AQ8IWP9 DMTN-206ENST00000443491 2415 ntAPPRIS P1 TSL 5 BASIC15.39■□□□□ 0.05
CCDC28AQ8IWP9 NDUFV1-201ENST00000322776 1596 ntAPPRIS P3 TSL 1 (best) BASIC15.39■□□□□ 0.05
CCDC28AQ8IWP9 ZNF385C-201ENST00000436535 1572 ntAPPRIS P1 TSL 5 BASIC15.39■□□□□ 0.05
CCDC28AQ8IWP9 PAGR1-201ENST00000320330 1702 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
CCDC28AQ8IWP9 TFDP2-202ENST00000467072 1853 ntAPPRIS P3 TSL 1 (best) BASIC15.39■□□□□ 0.05
CCDC28AQ8IWP9 TBX6-203ENST00000553607 2162 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
CCDC28AQ8IWP9 EPO-201ENST00000252723 1330 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
CCDC28AQ8IWP9 RAB24-201ENST00000303251 1311 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
CCDC28AQ8IWP9 POMZP3-202ENST00000310842 1490 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
CCDC28AQ8IWP9 AC011944.1-201ENST00000316148 1900 ntTSL 2 BASIC15.39■□□□□ 0.05
CCDC28AQ8IWP9 PFN2-201ENST00000239940 2261 ntAPPRIS P3 TSL 1 (best) BASIC15.38■□□□□ 0.05
CCDC28AQ8IWP9 AC142086.1-202ENST00000398669 1839 ntTSL 2 BASIC15.38■□□□□ 0.05
CCDC28AQ8IWP9 GTF2H4-202ENST00000376316 1673 ntAPPRIS P1 TSL 5 BASIC15.38■□□□□ 0.05
CCDC28AQ8IWP9 RBFOX1-204ENST00000422070 1684 ntTSL 2 BASIC15.38■□□□□ 0.05
CCDC28AQ8IWP9 SCRN2-201ENST00000290216 1548 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
CCDC28AQ8IWP9 DDAH1-205ENST00000539042 1519 ntAPPRIS P1 TSL 5 BASIC15.38■□□□□ 0.05
CCDC28AQ8IWP9 MTX2-201ENST00000249442 1364 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
CCDC28AQ8IWP9 KCNC2-209ENST00000550433 2931 ntAPPRIS ALT2 TSL 1 (best) BASIC15.38■□□□□ 0.05
CCDC28AQ8IWP9 HIPK4-201ENST00000291823 2452 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
CCDC28AQ8IWP9 DNM2-203ENST00000389253 3581 ntTSL 5 BASIC15.38■□□□□ 0.05
CCDC28AQ8IWP9 CAMTA1-201ENST00000303635 8444 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
CCDC28AQ8IWP9 FBXL17-201ENST00000359660 4510 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
CCDC28AQ8IWP9 CPNE9-205ENST00000613455 1742 ntTSL 5 BASIC15.38■□□□□ 0.05
CCDC28AQ8IWP9 BCAR1-202ENST00000393420 2667 ntTSL 5 BASIC15.38■□□□□ 0.05
CCDC28AQ8IWP9 ZFPM2-201ENST00000407775 4700 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
CCDC28AQ8IWP9 GPRC5C-205ENST00000481232 1592 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
CCDC28AQ8IWP9 NABP2-202ENST00000341463 1411 ntAPPRIS P1 TSL 3 BASIC15.38■□□□□ 0.05
CCDC28AQ8IWP9 KRT8P36-201ENST00000489121 1440 ntBASIC15.38■□□□□ 0.05
CCDC28AQ8IWP9 NXT1-201ENST00000254998 1123 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
CCDC28AQ8IWP9 TMEM243-201ENST00000257637 1063 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
CCDC28AQ8IWP9 ZNF746-201ENST00000340622 3806 ntAPPRIS P3 TSL 1 (best) BASIC15.38■□□□□ 0.05
CCDC28AQ8IWP9 EIF6-201ENST00000374436 1252 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
Retrieved 100 of 98,524 protein–RNA pairs in 33.1 ms