Protein–RNA interactions for Protein: P55347

PKNOX1, Homeobox protein PKNOX1, humanhuman

Predictions only

Length 436 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PKNOX1P55347 FARP2-202ENST00000373287 2580 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
PKNOX1P55347 AL135905.2-201ENST00000584934 1404 ntBASIC18.08■□□□□ 0.49
PKNOX1P55347 ADAM15-207ENST00000368413 1901 ntTSL 5 BASIC18.08■□□□□ 0.49
PKNOX1P55347 ACOXL-205ENST00000439055 2373 ntTSL 2 BASIC18.08■□□□□ 0.48
PKNOX1P55347 MYC-207ENST00000621592 2366 ntAPPRIS ALT1 TSL 1 (best) BASIC18.08■□□□□ 0.48
PKNOX1P55347 ENSA-205ENST00000361532 792 ntTSL 2 BASIC18.08■□□□□ 0.48
PKNOX1P55347 BOLA1-203ENST00000369153 1096 ntAPPRIS P1 TSL 3 BASIC18.08■□□□□ 0.48
PKNOX1P55347 F8A2-201ENST00000369505 1116 ntAPPRIS P1 BASIC18.08■□□□□ 0.48
PKNOX1P55347 RAMP1-204ENST00000409726 734 ntTSL 3 BASIC18.08■□□□□ 0.48
PKNOX1P55347 AP000697.1-201ENST00000430607 339 ntTSL 5 BASIC18.08■□□□□ 0.48
PKNOX1P55347 MAGI2-AS3-211ENST00000451809 707 ntTSL 3 BASIC18.08■□□□□ 0.48
PKNOX1P55347 FLT3LG-211ENST00000600429 984 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
PKNOX1P55347 ADORA1-208ENST00000618295 862 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
PKNOX1P55347 AC063977.6-201ENST00000600074 1763 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
PKNOX1P55347 MRPL3-201ENST00000264995 1706 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
PKNOX1P55347 DENND5B-201ENST00000354285 3132 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
PKNOX1P55347 ARSA-201ENST00000216124 2050 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
PKNOX1P55347 FIGNL2-202ENST00000618634 4812 ntAPPRIS P1 TSL 5 BASIC18.08■□□□□ 0.48
PKNOX1P55347 CBFB-202ENST00000412916 2971 ntAPPRIS ALT1 TSL 1 (best) BASIC18.08■□□□□ 0.48
PKNOX1P55347 GLCCI1-201ENST00000223145 4743 ntAPPRIS P2 TSL 1 (best) BASIC18.08■□□□□ 0.48
PKNOX1P55347 CCT7-215ENST00000539919 2031 ntTSL 2 BASIC18.08■□□□□ 0.48
PKNOX1P55347 GNAZ-203ENST00000615612 3333 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
PKNOX1P55347 MCM9-201ENST00000316068 2442 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
PKNOX1P55347 DMRTA2-201ENST00000404795 3137 ntAPPRIS P1 TSL 5 BASIC18.07■□□□□ 0.48
PKNOX1P55347 PHKG1-205ENST00000452681 2226 ntTSL 2 BASIC18.07■□□□□ 0.48
PKNOX1P55347 SQSTM1-202ENST00000389805 2986 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
PKNOX1P55347 DDX17-211ENST00000640332 2190 ntAPPRIS P3 TSL 1 (best) BASIC18.07■□□□□ 0.48
PKNOX1P55347 DDX17-212ENST00000640668 2196 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
PKNOX1P55347 DNAJC8-201ENST00000263697 1759 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
PKNOX1P55347 TCP11-228ENST00000611141 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
PKNOX1P55347 CCDC137-201ENST00000329214 2468 ntAPPRIS P2 TSL 1 (best) BASIC18.07■□□□□ 0.48
PKNOX1P55347 TEX13A-202ENST00000609007 1349 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
PKNOX1P55347 CCDC43-201ENST00000315286 2082 ntAPPRIS P2 TSL 1 (best) BASIC18.07■□□□□ 0.48
PKNOX1P55347 FHL1-205ENST00000370690 2441 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
PKNOX1P55347 MAL-201ENST00000309988 1112 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
PKNOX1P55347 NDUFA12-201ENST00000327772 635 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
PKNOX1P55347 BSX-201ENST00000343035 830 ntAPPRIS P1 TSL 5 BASIC18.07■□□□□ 0.48
PKNOX1P55347 AC073050.1-201ENST00000442316 462 ntTSL 3 BASIC18.07■□□□□ 0.48
PKNOX1P55347 MOK-228ENST00000523231 1114 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
PKNOX1P55347 TMEM72-203ENST00000544540 1018 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
PKNOX1P55347 AC007493.2-201ENST00000568427 478 ntTSL 3 BASIC18.07■□□□□ 0.48
PKNOX1P55347 AL359736.2-201ENST00000621992 437 ntBASIC18.07■□□□□ 0.48
PKNOX1P55347 FAM197Y4-202ENST00000622692 608 ntBASIC18.07■□□□□ 0.48
PKNOX1P55347 NTAN1-211ENST00000622833 1049 ntTSL 2 BASIC18.07■□□□□ 0.48
PKNOX1P55347 NTAN1-212ENST00000624579 1115 ntTSL 2 BASIC18.07■□□□□ 0.48
PKNOX1P55347 ZNF517-201ENST00000359971 2335 ntAPPRIS P1 TSL 4 BASIC18.07■□□□□ 0.48
PKNOX1P55347 RPS6KB1-204ENST00000443572 1913 ntTSL 2 BASIC18.07■□□□□ 0.48
PKNOX1P55347 NPEPL1-204ENST00000525967 1917 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
PKNOX1P55347 PTGDR-201ENST00000306051 2942 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
PKNOX1P55347 GLIS1-202ENST00000628545 2807 ntAPPRIS ALT2 TSL 5 BASIC18.07■□□□□ 0.48
PKNOX1P55347 CHTOP-207ENST00000614256 1840 ntTSL 3 BASIC18.07■□□□□ 0.48
PKNOX1P55347 PARVG-205ENST00000422871 3462 ntAPPRIS P1 TSL 5 BASIC18.07■□□□□ 0.48
PKNOX1P55347 EEF1AKMT2-201ENST00000368836 1462 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
PKNOX1P55347 ETV2-203ENST00000402764 1487 ntAPPRIS P3 TSL 1 (best) BASIC18.07■□□□□ 0.48
PKNOX1P55347 ANKRD6-201ENST00000339746 3073 ntAPPRIS ALT1 TSL 1 (best) BASIC18.07■□□□□ 0.48
PKNOX1P55347 P2RY6-202ENST00000393590 2398 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
PKNOX1P55347 ST6GALNAC6-201ENST00000291839 2280 ntAPPRIS P3 TSL 1 (best) BASIC18.06■□□□□ 0.48
PKNOX1P55347 CDH24-204ENST00000487137 3438 ntAPPRIS P1 TSL 5 BASIC18.06■□□□□ 0.48
PKNOX1P55347 UBE2Q2-201ENST00000267938 3130 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
PKNOX1P55347 NDN-201ENST00000331837 1931 ntAPPRIS P1 BASIC18.06■□□□□ 0.48
PKNOX1P55347 KCNQ2-207ENST00000370224 3004 ntTSL 5 BASIC18.06■□□□□ 0.48
PKNOX1P55347 MYLKP1-201ENST00000509077 1580 ntBASIC18.06■□□□□ 0.48
PKNOX1P55347 ZNF280D-205ENST00000559000 4726 ntAPPRIS ALT2 TSL 2 BASIC18.06■□□□□ 0.48
PKNOX1P55347 DUSP23-203ENST00000368109 729 ntAPPRIS P1 TSL 2 BASIC18.06■□□□□ 0.48
PKNOX1P55347 PMEPA1-204ENST00000395814 800 ntTSL 3 BASIC18.06■□□□□ 0.48
PKNOX1P55347 CDKN1B-202ENST00000396340 897 ntTSL 3 BASIC18.06■□□□□ 0.48
PKNOX1P55347 MESTP1-201ENST00000404287 994 ntBASIC18.06■□□□□ 0.48
PKNOX1P55347 AL590666.2-201ENST00000448869 758 ntTSL 2 BASIC18.06■□□□□ 0.48
PKNOX1P55347 FAM86C2P-201ENST00000525180 435 ntTSL 4 BASIC18.06■□□□□ 0.48
PKNOX1P55347 AC004706.3-201ENST00000634558 1009 ntTSL 5 BASIC18.06■□□□□ 0.48
PKNOX1P55347 TSTD3-202ENST00000636394 336 ntAPPRIS ALT2 TSL 3 BASIC18.06■□□□□ 0.48
PKNOX1P55347 SNX27-203ENST00000368843 7197 ntAPPRIS P3 TSL 1 (best) BASIC18.06■□□□□ 0.48
PKNOX1P55347 CACNA1A-227ENST00000636549 6792 ntAPPRIS ALT2 TSL 5 BASIC18.06■□□□□ 0.48
PKNOX1P55347 ZNF133-210ENST00000535822 2341 ntTSL 3 BASIC18.06■□□□□ 0.48
PKNOX1P55347 CDK10-202ENST00000353379 1798 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
PKNOX1P55347 RIC8A-208ENST00000527696 2565 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
PKNOX1P55347 SNX17-201ENST00000233575 2044 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
PKNOX1P55347 ENC1-201ENST00000302351 5520 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
PKNOX1P55347 MROH1-202ENST00000423230 1712 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
PKNOX1P55347 MECP2-205ENST00000453960 1729 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
PKNOX1P55347 AL590648.2-201ENST00000427949 2225 ntTSL 2 BASIC18.06■□□□□ 0.48
PKNOX1P55347 MAPT-209ENST00000446361 5345 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
PKNOX1P55347 TRAK1-209ENST00000487159 5536 ntAPPRIS ALT2 TSL 5 BASIC18.06■□□□□ 0.48
PKNOX1P55347 LRRC23-207ENST00000433346 1387 ntTSL 5 BASIC18.05■□□□□ 0.48
PKNOX1P55347 MINOS1-NBL1-204ENST00000602662 1623 ntAPPRIS P1 TSL 2 BASIC18.05■□□□□ 0.48
PKNOX1P55347 ZNF22-201ENST00000298299 2551 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
PKNOX1P55347 PARD3-201ENST00000340077 3518 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
PKNOX1P55347 VPS26B-202ENST00000525095 1558 ntAPPRIS P1 TSL 5 BASIC18.05■□□□□ 0.48
PKNOX1P55347 MCAT-202ENST00000327555 1134 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
PKNOX1P55347 VSIG2-202ENST00000403470 1191 ntTSL 2 BASIC18.05■□□□□ 0.48
PKNOX1P55347 SAPCD2P4-201ENST00000424595 1171 ntBASIC18.05■□□□□ 0.48
PKNOX1P55347 C16orf90-202ENST00000437192 907 ntAPPRIS P1 TSL 5 BASIC18.05■□□□□ 0.48
PKNOX1P55347 UBE2K-204ENST00000503368 891 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
PKNOX1P55347 AC093752.1-201ENST00000511950 605 ntTSL 4 BASIC18.05■□□□□ 0.48
PKNOX1P55347 AC090877.2-202ENST00000560363 574 ntTSL 2 BASIC18.05■□□□□ 0.48
PKNOX1P55347 OAZ1-211ENST00000602676 1148 ntAPPRIS P3 TSL 5 BASIC18.05■□□□□ 0.48
PKNOX1P55347 FAM110A-203ENST00000381939 1737 ntAPPRIS P1 TSL 3 BASIC18.05■□□□□ 0.48
PKNOX1P55347 EPB41L5-203ENST00000443124 2872 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
PKNOX1P55347 PDE3B-201ENST00000282096 6076 ntAPPRIS P2 TSL 1 (best) BASIC18.05■□□□□ 0.48
PKNOX1P55347 KLHL22-201ENST00000328879 2616 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 45.3 ms