Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 SDR39U1-202ENST00000538105 1041 ntTSL 2 BASIC17.85■□□□□ 0.45
FOXA1P55317 SLC25A3-211ENST00000548847 1369 ntTSL 5 BASIC17.85■□□□□ 0.45
FOXA1P55317 SIVA1-207ENST00000556195 674 ntTSL 3 BASIC17.85■□□□□ 0.45
FOXA1P55317 AL445686.2-201ENST00000577528 1445 ntTSL 3 BASIC17.85■□□□□ 0.45
FOXA1P55317 TGIF1-222ENST00000577543 729 ntTSL 3 BASIC17.85■□□□□ 0.45
FOXA1P55317 AC008649.1-201ENST00000589557 516 ntTSL 2 BASIC17.85■□□□□ 0.45
FOXA1P55317 OLFM2-203ENST00000590841 1665 ntTSL 2 BASIC17.85■□□□□ 0.45
FOXA1P55317 LINC00896-202ENST00000609602 2128 ntBASIC17.85■□□□□ 0.45
FOXA1P55317 ZNF746-202ENST00000458143 3797 ntAPPRIS ALT2 TSL 2 BASIC17.85■□□□□ 0.45
FOXA1P55317 SKOR1-203ENST00000554054 3620 ntAPPRIS ALT2 TSL 5 BASIC17.85■□□□□ 0.45
FOXA1P55317 FAM234A-203ENST00000399932 3213 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
FOXA1P55317 PRKCB-202ENST00000321728 2689 ntAPPRIS ALT1 TSL 1 (best) BASIC17.85■□□□□ 0.45
FOXA1P55317 POLD3-203ENST00000527458 2122 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
FOXA1P55317 PSRC1-205ENST00000409138 1826 ntTSL 2 BASIC17.84■□□□□ 0.45
FOXA1P55317 MON1B-202ENST00000439557 1759 ntTSL 2 BASIC17.84■□□□□ 0.45
FOXA1P55317 SLBP-201ENST00000318386 1635 ntAPPRIS ALT1 TSL 3 BASIC17.84■□□□□ 0.45
FOXA1P55317 APBB1-210ENST00000530885 1626 ntTSL 2 BASIC17.84■□□□□ 0.45
FOXA1P55317 MYO19-225ENST00000621344 1640 ntTSL 2 BASIC17.84■□□□□ 0.45
FOXA1P55317 NUDT19-201ENST00000397061 2967 ntAPPRIS P1 TSL 2 BASIC17.84■□□□□ 0.45
FOXA1P55317 MAPK8IP3-216ENST00000610761 5626 ntAPPRIS ALT1 TSL 1 (best) BASIC17.84■□□□□ 0.45
FOXA1P55317 ANXA6-201ENST00000354546 2593 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
FOXA1P55317 CRYGFP-201ENST00000418459 633 ntBASIC17.84■□□□□ 0.45
FOXA1P55317 RBCK1-213ENST00000475269 1200 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
FOXA1P55317 CBLN3-202ENST00000555436 718 ntTSL 3 BASIC17.84■□□□□ 0.45
FOXA1P55317 AC100839.1-201ENST00000559589 577 ntTSL 4 BASIC17.84■□□□□ 0.45
FOXA1P55317 AC233702.5-201ENST00000584107 538 ntBASIC17.84■□□□□ 0.45
FOXA1P55317 TMEM198-201ENST00000344458 2393 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
FOXA1P55317 ACADVL-205ENST00000543245 2227 ntTSL 2 BASIC17.84■□□□□ 0.45
FOXA1P55317 STX3-201ENST00000337979 3299 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
FOXA1P55317 SDHAP2-201ENST00000455183 2001 ntBASIC17.84■□□□□ 0.45
FOXA1P55317 CAPN1-201ENST00000279247 3007 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
FOXA1P55317 EML3-212ENST00000494176 2901 ntTSL 2 BASIC17.84■□□□□ 0.45
FOXA1P55317 EML3-216ENST00000529309 2909 ntTSL 2 BASIC17.84■□□□□ 0.45
FOXA1P55317 GPANK1-204ENST00000375900 1814 ntAPPRIS P1 TSL 2 BASIC17.84■□□□□ 0.45
FOXA1P55317 SLC35A3-224ENST00000640732 1777 ntTSL 5 BASIC17.84■□□□□ 0.45
FOXA1P55317 MAFG-202ENST00000392366 1743 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
FOXA1P55317 ZNF22-201ENST00000298299 2551 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
FOXA1P55317 SEPT2-245ENST00000616972 3446 ntTSL 2 BASIC17.84■□□□□ 0.45
FOXA1P55317 SIGIRR-220ENST00000531205 1649 ntTSL 2 BASIC17.83■□□□□ 0.45
FOXA1P55317 UROS-202ENST00000368778 1556 ntTSL 2 BASIC17.83■□□□□ 0.45
FOXA1P55317 GMCL1P1-201ENST00000463439 1581 ntBASIC17.83■□□□□ 0.45
FOXA1P55317 AC036111.1-201ENST00000533973 1582 ntBASIC17.83■□□□□ 0.45
FOXA1P55317 ARID3C-201ENST00000378909 1411 ntAPPRIS P1 TSL 2 BASIC17.83■□□□□ 0.45
FOXA1P55317 RGN-204ENST00000457380 2041 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
FOXA1P55317 OARD1-202ENST00000424266 1337 ntAPPRIS P1 TSL 2 BASIC17.83■□□□□ 0.44
FOXA1P55317 RNF170-205ENST00000526349 1338 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
FOXA1P55317 FCMR-201ENST00000367091 1950 ntAPPRIS P3 TSL 1 (best) BASIC17.83■□□□□ 0.44
FOXA1P55317 CDH22-203ENST00000537909 3902 ntAPPRIS P1 TSL 2 BASIC17.83■□□□□ 0.44
FOXA1P55317 FUOM-203ENST00000368552 762 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
FOXA1P55317 DAB1-202ENST00000371230 1150 ntTSL 5 BASIC17.83■□□□□ 0.44
FOXA1P55317 RAP1B-203ENST00000378985 1017 ntTSL 2 BASIC17.83■□□□□ 0.44
FOXA1P55317 LINC01534-202ENST00000433232 554 ntTSL 3 BASIC17.83■□□□□ 0.44
FOXA1P55317 CA15P1-201ENST00000481698 905 ntBASIC17.83■□□□□ 0.44
FOXA1P55317 RAP1B-221ENST00000540209 1264 ntTSL 2 BASIC17.83■□□□□ 0.44
FOXA1P55317 MIR3180-5-201ENST00000583743 153 ntBASIC17.83■□□□□ 0.44
FOXA1P55317 KLHL26-205ENST00000599006 989 ntTSL 5 BASIC17.83■□□□□ 0.44
FOXA1P55317 EBLN3P-205ENST00000629870 958 ntTSL 3 BASIC17.83■□□□□ 0.44
FOXA1P55317 AL049637.2-201ENST00000641778 930 ntBASIC17.83■□□□□ 0.44
FOXA1P55317 DCBLD2-201ENST00000326840 6122 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
FOXA1P55317 LPAR2-201ENST00000407877 1791 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
FOXA1P55317 PITPNM2-209ENST00000546049 1793 ntTSL 5 BASIC17.83■□□□□ 0.44
FOXA1P55317 PDCD7-201ENST00000204549 2851 ntAPPRIS P2 TSL 1 (best) BASIC17.83■□□□□ 0.44
FOXA1P55317 ENOPH1-202ENST00000505846 1689 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
FOXA1P55317 MRM2-203ENST00000440306 1570 ntAPPRIS P1 TSL 5 BASIC17.83■□□□□ 0.44
FOXA1P55317 C12orf42-205ENST00000548048 1532 ntAPPRIS ALT2 TSL 5 BASIC17.82■□□□□ 0.44
FOXA1P55317 CLDN5-202ENST00000406028 2548 ntTSL 2 BASIC17.82■□□□□ 0.44
FOXA1P55317 ZSWIM8-220ENST00000604524 5465 ntTSL 5 BASIC17.82■□□□□ 0.44
FOXA1P55317 CENPA-202ENST00000335756 1452 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
FOXA1P55317 NPFFR2-201ENST00000308744 1922 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
FOXA1P55317 SLC2A8-202ENST00000373360 1937 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
FOXA1P55317 DIDO1-203ENST00000370366 2383 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
FOXA1P55317 MTHFD2L-203ENST00000395759 2354 ntAPPRIS P2 TSL 5 BASIC17.82■□□□□ 0.44
FOXA1P55317 CALHM2-201ENST00000260743 1859 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
FOXA1P55317 CYP4F8-210ENST00000612078 1889 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
FOXA1P55317 SLC35F3-201ENST00000366617 2762 ntAPPRIS ALT1 TSL 1 (best) BASIC17.82■□□□□ 0.44
FOXA1P55317 SENP6-202ENST00000370010 4644 ntAPPRIS P3 TSL 1 (best) BASIC17.82■□□□□ 0.44
FOXA1P55317 SH2D3C-203ENST00000373277 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
FOXA1P55317 ST8SIA5-201ENST00000315087 2716 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
FOXA1P55317 AC060780.1-201ENST00000635600 1782 ntTSL 5 BASIC17.82■□□□□ 0.44
FOXA1P55317 TNNC1-201ENST00000232975 714 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
FOXA1P55317 CAPN10-202ENST00000270364 1267 ntTSL 2 BASIC17.82■□□□□ 0.44
FOXA1P55317 PRR31-201ENST00000371629 978 ntTSL 2 BASIC17.82■□□□□ 0.44
FOXA1P55317 CDKN1B-202ENST00000396340 897 ntTSL 3 BASIC17.82■□□□□ 0.44
FOXA1P55317 GPR35-203ENST00000407714 1258 ntAPPRIS P3 TSL 1 (best) BASIC17.82■□□□□ 0.44
FOXA1P55317 AC012618.2-201ENST00000428058 849 ntBASIC17.82■□□□□ 0.44
FOXA1P55317 UBE2SP1-201ENST00000450587 669 ntBASIC17.82■□□□□ 0.44
FOXA1P55317 CYGB-204ENST00000589342 815 ntTSL 3 BASIC17.82■□□□□ 0.44
FOXA1P55317 STAMBPL1-203ENST00000371926 2532 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
FOXA1P55317 AC093627.4-201ENST00000484550 5008 ntTSL 2 BASIC17.82■□□□□ 0.44
FOXA1P55317 AC120049.1-201ENST00000592638 2065 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
FOXA1P55317 RETREG1-201ENST00000306320 3268 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
FOXA1P55317 C1orf159-204ENST00000379339 2429 ntAPPRIS ALT2 TSL 2 BASIC17.82■□□□□ 0.44
FOXA1P55317 TMC6-202ENST00000322914 2786 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
FOXA1P55317 RASL11B-201ENST00000248706 1995 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
FOXA1P55317 SH2D2A-201ENST00000368198 1599 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
FOXA1P55317 WWC3-201ENST00000380861 6647 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
FOXA1P55317 PABPC1L-217ENST00000537323 1910 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
FOXA1P55317 MAFK-201ENST00000343242 3368 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
FOXA1P55317 CBFB-202ENST00000412916 2971 ntAPPRIS ALT1 TSL 1 (best) BASIC17.82■□□□□ 0.44
FOXA1P55317 AP001273.2-201ENST00000638767 2993 ntAPPRIS P1 TSL 5 BASIC17.82■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 28.1 ms