Protein–RNA interactions for Protein: P53675

CLTCL1, Clathrin heavy chain 2, humanhuman

Predictions only

Length 1,640 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLTCL1P53675 FAM9A-202ENST00000543214 1544 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
CLTCL1P53675 ZNF331-214ENST00000511154 2120 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
CLTCL1P53675 AC005082.1-201ENST00000413042 2259 ntBASIC26.28■■□□□ 1.8
CLTCL1P53675 CACNG7-201ENST00000222212 1016 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
CLTCL1P53675 KLHL7-201ENST00000322275 969 ntTSL 1 (best) BASIC26.28■■□□□ 1.8
CLTCL1P53675 IGF2-206ENST00000418738 934 ntAPPRIS P2 TSL 1 (best) BASIC26.28■■□□□ 1.8
CLTCL1P53675 FAM197Y8-203ENST00000450145 560 ntBASIC26.28■■□□□ 1.8
CLTCL1P53675 AC068472.1-201ENST00000474589 881 ntBASIC26.28■■□□□ 1.8
CLTCL1P53675 LINC00595-207ENST00000476909 792 ntTSL 2 BASIC26.28■■□□□ 1.8
CLTCL1P53675 ZAR1L-202ENST00000533490 1564 ntAPPRIS P1 TSL 5 BASIC26.28■■□□□ 1.8
CLTCL1P53675 AL162171.1-201ENST00000556328 718 ntTSL 3 BASIC26.28■■□□□ 1.8
CLTCL1P53675 LINC01607-201ENST00000607172 621 ntTSL 2 BASIC26.28■■□□□ 1.8
CLTCL1P53675 SAMD11-211ENST00000616125 2230 ntAPPRIS ALT2 TSL 5 BASIC26.28■■□□□ 1.8
CLTCL1P53675 TP73-AS1-210ENST00000637775 1455 ntBASIC26.27■■□□□ 1.8
CLTCL1P53675 KLC2-204ENST00000394067 2898 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
CLTCL1P53675 SMIM10L2B-201ENST00000433425 2737 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
CLTCL1P53675 HOXB9-201ENST00000311177 2581 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
CLTCL1P53675 KCNMA1-252ENST00000639120 2308 ntTSL 5 BASIC26.27■■□□□ 1.8
CLTCL1P53675 EXO5-202ENST00000358527 1892 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
CLTCL1P53675 CRYL1-202ENST00000382812 1581 ntTSL 1 (best) BASIC26.27■■□□□ 1.8
CLTCL1P53675 GABRG3-206ENST00000555083 1405 ntTSL 2 BASIC26.27■■□□□ 1.8
CLTCL1P53675 FBXO24-201ENST00000241071 2276 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
CLTCL1P53675 LEXM-201ENST00000358193 1777 ntAPPRIS P3 TSL 1 (best) BASIC26.27■■□□□ 1.8
CLTCL1P53675 PLEKHH3-201ENST00000293349 2987 ntAPPRIS ALT1 TSL 5 BASIC26.27■■□□□ 1.8
CLTCL1P53675 LINC01615-202ENST00000449466 603 ntTSL 3 BASIC26.27■■□□□ 1.8
CLTCL1P53675 AP000688.1-201ENST00000535199 1221 ntTSL 2 BASIC26.27■■□□□ 1.8
CLTCL1P53675 SHBG-211ENST00000574539 938 ntTSL 1 (best) BASIC26.27■■□□□ 1.8
CLTCL1P53675 RLN3-202ENST00000585987 541 ntTSL 1 (best) BASIC26.27■■□□□ 1.8
CLTCL1P53675 AC008687.5-201ENST00000593746 558 ntBASIC26.27■■□□□ 1.8
CLTCL1P53675 AL591684.3-201ENST00000605187 298 ntBASIC26.27■■□□□ 1.8
CLTCL1P53675 AL355877.3-201ENST00000622820 899 ntBASIC26.27■■□□□ 1.8
CLTCL1P53675 SUSD1-202ENST00000374263 2973 ntAPPRIS ALT2 TSL 2 BASIC26.27■■□□□ 1.8
CLTCL1P53675 INTS4P1-201ENST00000438455 1935 ntBASIC26.26■■□□□ 1.8
CLTCL1P53675 ZNF579-201ENST00000325421 2899 ntAPPRIS P1 TSL 2 BASIC26.26■■□□□ 1.79
CLTCL1P53675 TMEM25-225ENST00000533102 1410 ntTSL 1 (best) BASIC26.26■■□□□ 1.79
CLTCL1P53675 GDPD1-201ENST00000284116 1821 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
CLTCL1P53675 RCN1P2-201ENST00000398357 915 ntBASIC26.26■■□□□ 1.79
CLTCL1P53675 TXNRD2-212ENST00000485358 850 ntTSL 2 BASIC26.26■■□□□ 1.79
CLTCL1P53675 AC097372.2-201ENST00000510996 732 ntTSL 3 BASIC26.26■■□□□ 1.79
CLTCL1P53675 MOK-208ENST00000519058 917 ntTSL 2 BASIC26.26■■□□□ 1.79
CLTCL1P53675 FAM57A-205ENST00000572018 373 ntTSL 3 BASIC26.26■■□□□ 1.79
CLTCL1P53675 AC012615.3-201ENST00000592884 500 ntTSL 3 BASIC26.26■■□□□ 1.79
CLTCL1P53675 AC005632.4-201ENST00000613759 431 ntTSL 3 BASIC26.26■■□□□ 1.79
CLTCL1P53675 C21orf59-201ENST00000290155 1692 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
CLTCL1P53675 PDLIM7-202ENST00000355841 1689 ntAPPRIS P4 TSL 1 (best) BASIC26.26■■□□□ 1.79
CLTCL1P53675 DGKZ-203ENST00000421244 2862 ntAPPRIS ALT2 TSL 1 (best) BASIC26.26■■□□□ 1.79
CLTCL1P53675 TCTN1-223ENST00000550703 2149 ntTSL 2 BASIC26.26■■□□□ 1.79
CLTCL1P53675 CLK2-202ENST00000361168 1934 ntAPPRIS P3 TSL 1 (best) BASIC26.26■■□□□ 1.79
CLTCL1P53675 SHROOM1-202ENST00000378676 2352 ntAPPRIS ALT2 TSL 5 BASIC26.26■■□□□ 1.79
CLTCL1P53675 MSL1-206ENST00000579565 1401 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
CLTCL1P53675 USP21-203ENST00000368002 2342 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
CLTCL1P53675 ZRSR2-201ENST00000307771 1491 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
CLTCL1P53675 GFI1-202ENST00000370332 2855 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
CLTCL1P53675 GYG2P1-201ENST00000357871 623 ntTSL 3 BASIC26.25■■□□□ 1.79
CLTCL1P53675 BOLA1-202ENST00000369152 859 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
CLTCL1P53675 AL031284.1-201ENST00000419297 478 ntBASIC26.25■■□□□ 1.79
CLTCL1P53675 MCCC2-205ENST00000509358 1214 ntTSL 1 (best) BASIC26.25■■□□□ 1.79
CLTCL1P53675 MIR5100-201ENST00000579544 119 ntBASIC26.25■■□□□ 1.79
CLTCL1P53675 MIMT1-202ENST00000599641 1290 ntTSL 1 (best) BASIC26.25■■□□□ 1.79
CLTCL1P53675 CD55-201ENST00000314754 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC26.25■■□□□ 1.79
CLTCL1P53675 TSPAN32-201ENST00000182290 1318 ntAPPRIS P2 TSL 1 (best) BASIC26.25■■□□□ 1.79
CLTCL1P53675 OARD1-202ENST00000424266 1337 ntAPPRIS P1 TSL 2 BASIC26.25■■□□□ 1.79
CLTCL1P53675 TSPAN32-217ENST00000612299 1301 ntTSL 5 BASIC26.25■■□□□ 1.79
CLTCL1P53675 LAPTM4B-204ENST00000619747 2758 ntTSL 1 (best) BASIC26.25■■□□□ 1.79
CLTCL1P53675 C16orf89-202ENST00000472572 1444 ntAPPRIS ALT2 TSL 1 (best) BASIC26.25■■□□□ 1.79
CLTCL1P53675 PGS1-201ENST00000262764 2201 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
CLTCL1P53675 SPNS1-201ENST00000311008 2208 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
CLTCL1P53675 KCTD13-207ENST00000568000 2528 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
CLTCL1P53675 WNT7B-202ENST00000409496 2285 ntAPPRIS ALT1 TSL 2 BASIC26.25■■□□□ 1.79
CLTCL1P53675 DNAJC28-203ENST00000402202 1480 ntAPPRIS P1 TSL 5 BASIC26.25■■□□□ 1.79
CLTCL1P53675 AC063977.6-201ENST00000600074 1763 ntTSL 1 (best) BASIC26.25■■□□□ 1.79
CLTCL1P53675 DMRT2-205ENST00000382255 2367 ntTSL 1 (best) BASIC26.25■■□□□ 1.79
CLTCL1P53675 TLE1-202ENST00000376484 666 ntTSL 3 BASIC26.25■■□□□ 1.79
CLTCL1P53675 AL590627.1-203ENST00000421194 1026 ntBASIC26.25■■□□□ 1.79
CLTCL1P53675 SMIM29-206ENST00000476320 1297 ntAPPRIS P1 TSL 2 BASIC26.25■■□□□ 1.79
CLTCL1P53675 PACRGL-218ENST00000507634 1142 ntTSL 5 BASIC26.25■■□□□ 1.79
CLTCL1P53675 HSD11B1L-223ENST00000616276 1580 ntAPPRIS ALT2 TSL 5 BASIC26.25■■□□□ 1.79
CLTCL1P53675 BIN2-210ENST00000615107 2255 ntAPPRIS P1 TSL 1 (best) BASIC26.24■■□□□ 1.79
CLTCL1P53675 ZNF787-202ENST00000587279 1657 ntTSL 2 BASIC26.24■■□□□ 1.79
CLTCL1P53675 AC023830.1-201ENST00000569678 1543 ntTSL 2 BASIC26.24■■□□□ 1.79
CLTCL1P53675 SEPT6-202ENST00000354228 1576 ntAPPRIS P4 TSL 1 (best) BASIC26.24■■□□□ 1.79
CLTCL1P53675 EYA2-202ENST00000327619 2702 ntAPPRIS P1 TSL 2 BASIC26.24■■□□□ 1.79
CLTCL1P53675 AL022314.1-201ENST00000414203 464 ntTSL 5 BASIC26.24■■□□□ 1.79
CLTCL1P53675 MUS81-201ENST00000308110 2392 ntAPPRIS P1 TSL 1 (best) BASIC26.24■■□□□ 1.79
CLTCL1P53675 IFRD2-202ENST00000417626 2109 ntTSL 1 (best) BASIC26.24■■□□□ 1.79
CLTCL1P53675 TSPAN17-202ENST00000310032 2550 ntTSL 5 BASIC26.24■■□□□ 1.79
CLTCL1P53675 AC125634.1-201ENST00000438758 1403 ntBASIC26.23■■□□□ 1.79
CLTCL1P53675 SGO1-209ENST00000442720 2266 ntAPPRIS ALT2 TSL 1 (best) BASIC26.23■■□□□ 1.79
CLTCL1P53675 NDN-201ENST00000331837 1931 ntAPPRIS P1 BASIC26.23■■□□□ 1.79
CLTCL1P53675 FAM72C-201ENST00000369175 1658 ntTSL 1 (best) BASIC26.23■■□□□ 1.79
CLTCL1P53675 IDH3G-202ENST00000370092 1712 ntTSL 5 BASIC26.23■■□□□ 1.79
CLTCL1P53675 TM2D1-201ENST00000294613 1250 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
CLTCL1P53675 ISCA2-201ENST00000298818 851 ntTSL 5 BASIC26.23■■□□□ 1.79
CLTCL1P53675 TM2D1-204ENST00000371180 1248 ntTSL 5 BASIC26.23■■□□□ 1.79
CLTCL1P53675 SLC9A3R1-202ENST00000413388 1285 ntTSL 2 BASIC26.23■■□□□ 1.79
CLTCL1P53675 CAMTA1-IT1-201ENST00000427317 365 ntTSL 3 BASIC26.23■■□□□ 1.79
CLTCL1P53675 MTCL1P1-201ENST00000446207 792 ntBASIC26.23■■□□□ 1.79
CLTCL1P53675 NDUFB2-209ENST00000472695 503 ntTSL 5 BASIC26.23■■□□□ 1.79
CLTCL1P53675 AC011467.2-201ENST00000598425 242 ntBASIC26.23■■□□□ 1.79
CLTCL1P53675 TM2D1-212ENST00000606498 969 ntAPPRIS P1 TSL 5 BASIC26.23■■□□□ 1.79
Retrieved 100 of 98,524 protein–RNA pairs in 27.9 ms