Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 PKMYT1-203ENST00000431515 2308 ntTSL 2 BASIC19.38■□□□□ 0.69
BDNFP23560 TSSC2-201ENST00000450217 709 ntBASIC19.38■□□□□ 0.69
BDNFP23560 LINC01293-201ENST00000453951 1266 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
BDNFP23560 FNDC5-205ENST00000496770 837 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
BDNFP23560 ADK-206ENST00000541550 2222 ntTSL 2 BASIC19.38■□□□□ 0.69
BDNFP23560 PHB2-207ENST00000542912 1138 ntTSL 5 BASIC19.38■□□□□ 0.69
BDNFP23560 LINC01582-202ENST00000561215 452 ntTSL 4 BASIC19.38■□□□□ 0.69
BDNFP23560 CBFB-203ENST00000561924 584 ntTSL 5 BASIC19.38■□□□□ 0.69
BDNFP23560 AC009084.1-201ENST00000566869 317 ntTSL 5 BASIC19.38■□□□□ 0.69
BDNFP23560 AC004771.4-201ENST00000576752 474 ntTSL 5 BASIC19.38■□□□□ 0.69
BDNFP23560 AKR1A1-214ENST00000621846 1360 ntAPPRIS P1 TSL 5 BASIC19.38■□□□□ 0.69
BDNFP23560 KCNE1B-204ENST00000623803 811 ntAPPRIS P2 TSL 1 (best) BASIC19.38■□□□□ 0.69
BDNFP23560 MAPK9-201ENST00000343111 4369 ntTSL 5 BASIC19.38■□□□□ 0.69
BDNFP23560 ADAP2-201ENST00000330889 2934 ntAPPRIS P2 TSL 1 (best) BASIC19.38■□□□□ 0.69
BDNFP23560 MBD3-207ENST00000590550 2782 ntTSL 2 BASIC19.38■□□□□ 0.69
BDNFP23560 AGAP4-201ENST00000311652 2715 ntAPPRIS ALT2 TSL 1 (best) BASIC19.38■□□□□ 0.69
BDNFP23560 SLC35E1-208ENST00000595753 5099 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
BDNFP23560 PTH2R-204ENST00000617735 2472 ntTSL 2 BASIC19.37■□□□□ 0.69
BDNFP23560 TEAD2-202ENST00000377214 2440 ntAPPRIS ALT1 TSL 2 BASIC19.37■□□□□ 0.69
BDNFP23560 FPGS-203ENST00000373247 2279 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
BDNFP23560 NARFL-201ENST00000251588 2112 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
BDNFP23560 ENOPH1-201ENST00000273920 2025 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
BDNFP23560 PHYKPL-201ENST00000308158 2038 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
BDNFP23560 CMTM7-201ENST00000334983 2038 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
BDNFP23560 ASZ1-201ENST00000284629 1865 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
BDNFP23560 AP001351.1-201ENST00000501397 1865 ntTSL 2 BASIC19.37■□□□□ 0.69
BDNFP23560 GCDH-216ENST00000591470 1867 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
BDNFP23560 RASSF1-210ENST00000616212 1842 ntTSL 2 BASIC19.37■□□□□ 0.69
BDNFP23560 MAFG-201ENST00000357736 5040 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
BDNFP23560 LRP1-204ENST00000553277 1693 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
BDNFP23560 LINC00311-201ENST00000366314 1566 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
BDNFP23560 CDC14B-203ENST00000375242 2965 ntTSL 2 BASIC19.37■□□□□ 0.69
BDNFP23560 CCDC74B-202ENST00000392984 1353 ntAPPRIS ALT2 TSL 5 BASIC19.37■□□□□ 0.69
BDNFP23560 DNASE1L2-201ENST00000320700 1326 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
BDNFP23560 UBC-206ENST00000538617 1303 ntTSL 5 BASIC19.37■□□□□ 0.69
BDNFP23560 HIST1H2AI-201ENST00000358739 503 ntAPPRIS P1 BASIC19.37■□□□□ 0.69
BDNFP23560 AC007952.1-201ENST00000399087 553 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
BDNFP23560 AC007952.2-202ENST00000399093 556 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
BDNFP23560 HCG4P8-203ENST00000443049 980 ntBASIC19.37■□□□□ 0.69
BDNFP23560 DYDC2-206ENST00000444807 1173 ntAPPRIS P3 TSL 3 BASIC19.37■□□□□ 0.69
BDNFP23560 LIMD2-211ENST00000583211 1298 ntTSL 3 BASIC19.37■□□□□ 0.69
BDNFP23560 TXNDC12-205ENST00000610127 806 ntTSL 2 BASIC19.37■□□□□ 0.69
BDNFP23560 NPAP1P7-201ENST00000613027 823 ntBASIC19.37■□□□□ 0.69
BDNFP23560 AC106017.2-202ENST00000628484 536 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
BDNFP23560 AL365255.1-201ENST00000637702 847 ntTSL 2 BASIC19.37■□□□□ 0.69
BDNFP23560 CDHR5-201ENST00000349570 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
BDNFP23560 TEPSIN-201ENST00000300714 2287 ntAPPRIS P2 TSL 1 (best) BASIC19.37■□□□□ 0.69
BDNFP23560 PTBP1-220ENST00000627714 2201 ntTSL 5 BASIC19.37■□□□□ 0.69
BDNFP23560 TCAIM-203ENST00000396078 2178 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
BDNFP23560 KLF6-204ENST00000469435 2169 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
BDNFP23560 TBC1D4-201ENST00000377625 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
BDNFP23560 ZNF623-203ENST00000526926 2612 ntAPPRIS ALT2 TSL 2 BASIC19.37■□□□□ 0.69
BDNFP23560 REPS1-203ENST00000409812 2511 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
BDNFP23560 SLC6A9-201ENST00000357730 2168 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
BDNFP23560 SIKE1-201ENST00000060969 2190 ntAPPRIS P3 TSL 1 (best) BASIC19.36■□□□□ 0.69
BDNFP23560 BAIAP2-203ENST00000416299 1442 ntTSL 2 BASIC19.36■□□□□ 0.69
BDNFP23560 NEURL2-201ENST00000372518 1278 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
BDNFP23560 PIP4K2A-202ENST00000376573 3802 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
BDNFP23560 VKORC1-205ENST00000394975 1012 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
BDNFP23560 ING5-202ENST00000406941 946 ntAPPRIS ALT1 TSL 1 (best) BASIC19.36■□□□□ 0.69
BDNFP23560 ATP5G2P1-201ENST00000433580 426 ntBASIC19.36■□□□□ 0.69
BDNFP23560 KRT18P56-201ENST00000507275 550 ntBASIC19.36■□□□□ 0.69
BDNFP23560 LINC00910-203ENST00000587874 544 ntTSL 4 BASIC19.36■□□□□ 0.69
BDNFP23560 AC092119.3-201ENST00000612618 583 ntBASIC19.36■□□□□ 0.69
BDNFP23560 RPRD1A-201ENST00000357384 1850 ntAPPRIS P1 TSL 5 BASIC19.36■□□□□ 0.69
BDNFP23560 MYBPH-201ENST00000255416 1805 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
BDNFP23560 DEF8-211ENST00000563795 1767 ntTSL 5 BASIC19.36■□□□□ 0.69
BDNFP23560 LYNX1-204ENST00000614491 4708 ntAPPRIS P1 TSL 2 BASIC19.36■□□□□ 0.69
BDNFP23560 FAM110A-203ENST00000381939 1737 ntAPPRIS P1 TSL 3 BASIC19.36■□□□□ 0.69
BDNFP23560 SLC38A10-201ENST00000288439 2708 ntAPPRIS P3 TSL 1 (best) BASIC19.36■□□□□ 0.69
BDNFP23560 AC135782.1-201ENST00000537498 2154 ntTSL 2 BASIC19.36■□□□□ 0.69
BDNFP23560 IFRD2-202ENST00000417626 2109 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
BDNFP23560 AC126763.1-201ENST00000552015 2118 ntBASIC19.36■□□□□ 0.69
BDNFP23560 STYXL1-208ENST00000451157 1570 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
BDNFP23560 HAUS8-202ENST00000448593 1545 ntAPPRIS ALT2 TSL 5 BASIC19.35■□□□□ 0.69
BDNFP23560 PTPA-204ENST00000355007 2515 ntTSL 5 BASIC19.35■□□□□ 0.69
BDNFP23560 TMPRSS5-205ENST00000538955 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.69
BDNFP23560 ETV4-201ENST00000319349 2429 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
BDNFP23560 RPL3-201ENST00000216146 1442 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
BDNFP23560 DRD5-201ENST00000304374 2330 ntAPPRIS P1 BASIC19.35■□□□□ 0.69
BDNFP23560 UPF1-201ENST00000262803 5348 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
BDNFP23560 AC060780.1-201ENST00000635600 1782 ntTSL 5 BASIC19.35■□□□□ 0.69
BDNFP23560 PSMD3-201ENST00000264639 2158 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
BDNFP23560 NDUFAF2-201ENST00000296597 719 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
BDNFP23560 KCNK7-202ENST00000342202 1283 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
BDNFP23560 CDC26-201ENST00000374206 872 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
BDNFP23560 IGHGP-201ENST00000390555 1178 ntBASIC19.35■□□□□ 0.69
BDNFP23560 IMMP2L-207ENST00000452895 833 ntAPPRIS P1 TSL 5 BASIC19.35■□□□□ 0.69
BDNFP23560 LAMTOR4-205ENST00000468582 621 ntTSL 2 BASIC19.35■□□□□ 0.69
BDNFP23560 ISCU-208ENST00000539593 1071 ntTSL 2 BASIC19.35■□□□□ 0.69
BDNFP23560 AL161669.1-201ENST00000559843 386 ntTSL 3 BASIC19.35■□□□□ 0.69
BDNFP23560 AL390719.2-201ENST00000606993 987 ntBASIC19.35■□□□□ 0.69
BDNFP23560 PRELID3A-203ENST00000587735 1694 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
BDNFP23560 PDIA2-202ENST00000404312 1575 ntAPPRIS ALT2 TSL 5 BASIC19.35■□□□□ 0.69
BDNFP23560 SENP6-201ENST00000327284 2700 ntTSL 2 BASIC19.35■□□□□ 0.69
BDNFP23560 BMP1-202ENST00000306385 4229 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
BDNFP23560 TRIM13-206ENST00000457662 1489 ntAPPRIS P3 TSL 1 (best) BASIC19.35■□□□□ 0.69
BDNFP23560 MID2-201ENST00000262843 2876 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
BDNFP23560 DLGAP4-206ENST00000475894 3110 ntAPPRIS ALT2 TSL 2 BASIC19.34■□□□□ 0.69
BDNFP23560 PACRGL-203ENST00000444671 1720 ntTSL 2 BASIC19.34■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 47.7 ms