Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 IZUMO4-201ENST00000395296 869 ntTSL 2 BASIC18.9■□□□□ 0.62
COL9A1P20849 UPK3A-202ENST00000396082 627 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
COL9A1P20849 POM121L12-201ENST00000408890 1283 ntAPPRIS P1 BASIC18.9■□□□□ 0.62
COL9A1P20849 AL669831.5-202ENST00000457084 566 ntTSL 4 BASIC18.9■□□□□ 0.62
COL9A1P20849 AC091607.1-201ENST00000490318 1060 ntBASIC18.9■□□□□ 0.62
COL9A1P20849 GUSBP12-201ENST00000513727 720 ntBASIC18.9■□□□□ 0.62
COL9A1P20849 AC055854.1-201ENST00000523627 570 ntTSL 4 BASIC18.9■□□□□ 0.62
COL9A1P20849 PRTN3-202ENST00000544537 1036 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
COL9A1P20849 MRPL52-215ENST00000556840 398 ntTSL 2 BASIC18.9■□□□□ 0.62
COL9A1P20849 PNMT-203ENST00000581428 677 ntTSL 2 BASIC18.9■□□□□ 0.62
COL9A1P20849 HEXIM2-207ENST00000592695 1246 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
COL9A1P20849 PRRT1-202ENST00000375150 1726 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
COL9A1P20849 SAV1-201ENST00000324679 3063 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
COL9A1P20849 ELMOD1-206ENST00000531234 1832 ntTSL 2 BASIC18.9■□□□□ 0.62
COL9A1P20849 DHRS7-201ENST00000216500 2322 ntAPPRIS P1 TSL 5 BASIC18.9■□□□□ 0.62
COL9A1P20849 FBLN1-204ENST00000402984 2355 ntTSL 5 BASIC18.9■□□□□ 0.62
COL9A1P20849 MMP28-201ENST00000605424 1928 ntAPPRIS P3 TSL 1 (best) BASIC18.9■□□□□ 0.62
COL9A1P20849 RPRM-201ENST00000325926 1471 ntAPPRIS P1 BASIC18.9■□□□□ 0.62
COL9A1P20849 WFIKKN1-201ENST00000319070 2028 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
COL9A1P20849 PDZD7-201ENST00000370215 2032 ntTSL 2 BASIC18.9■□□□□ 0.62
COL9A1P20849 STEAP1B-201ENST00000404369 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
COL9A1P20849 TPD52-211ENST00000519303 1594 ntTSL 1 (best) BASIC18.89■□□□□ 0.62
COL9A1P20849 AC243965.2-201ENST00000612576 2671 ntTSL 5 BASIC18.89■□□□□ 0.62
COL9A1P20849 CXCL16-201ENST00000293778 2222 ntAPPRIS P2 TSL 1 (best) BASIC18.89■□□□□ 0.61
COL9A1P20849 KRT3-201ENST00000417996 2319 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
COL9A1P20849 IRX2-201ENST00000302057 2456 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
COL9A1P20849 GSTO2-201ENST00000338595 1179 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
COL9A1P20849 PARK7-201ENST00000338639 949 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
COL9A1P20849 EFNA4-202ENST00000368409 1263 ntAPPRIS P3 TSL 1 (best) BASIC18.89■□□□□ 0.61
COL9A1P20849 DICER1-AS1-202ENST00000439819 810 ntTSL 3 BASIC18.89■□□□□ 0.61
COL9A1P20849 SERPINA7P1-201ENST00000443077 631 ntBASIC18.89■□□□□ 0.61
COL9A1P20849 ATG10-207ENST00000513443 978 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
COL9A1P20849 CYB561D1-208ENST00000528785 1271 ntAPPRIS ALT1 TSL 5 BASIC18.89■□□□□ 0.61
COL9A1P20849 CYB561D1-209ENST00000533024 913 ntTSL 2 BASIC18.89■□□□□ 0.61
COL9A1P20849 GSTO1-207ENST00000539281 1052 ntTSL 5 BASIC18.89■□□□□ 0.61
COL9A1P20849 TMEM220-203ENST00000578345 559 ntAPPRIS ALT2 TSL 2 BASIC18.89■□□□□ 0.61
COL9A1P20849 TMEM220-AS1-201ENST00000579114 575 ntTSL 4 BASIC18.89■□□□□ 0.61
COL9A1P20849 MTDHP3-201ENST00000594186 672 ntBASIC18.89■□□□□ 0.61
COL9A1P20849 LINC02536-201ENST00000625799 625 ntTSL 3 BASIC18.89■□□□□ 0.61
COL9A1P20849 KEAP1-202ENST00000393623 2648 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
COL9A1P20849 MRFAP1-201ENST00000320912 2049 ntAPPRIS P1 TSL 2 BASIC18.89■□□□□ 0.61
COL9A1P20849 WDR61-201ENST00000267973 1387 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
COL9A1P20849 AC005329.3-201ENST00000626781 1366 ntTSL 5 BASIC18.89■□□□□ 0.61
COL9A1P20849 FAM129C-208ENST00000599164 2073 ntAPPRIS ALT2 TSL 2 BASIC18.89■□□□□ 0.61
COL9A1P20849 SLC6A18-201ENST00000324642 2121 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
COL9A1P20849 HDAC1-201ENST00000373548 2124 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
COL9A1P20849 MGAT3-201ENST00000341184 5062 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
COL9A1P20849 ACY1-201ENST00000404366 1473 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
COL9A1P20849 HAUS4-218ENST00000555986 1626 ntTSL 5 BASIC18.89■□□□□ 0.61
COL9A1P20849 TOX2-205ENST00000423191 1709 ntTSL 2 BASIC18.88■□□□□ 0.61
COL9A1P20849 TMEM104-202ENST00000417024 1781 ntTSL 2 BASIC18.88■□□□□ 0.61
COL9A1P20849 AC016065.1-201ENST00000500118 2413 ntTSL 2 BASIC18.88■□□□□ 0.61
COL9A1P20849 CABP5-201ENST00000293255 1257 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
COL9A1P20849 CRYGN-201ENST00000337323 754 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
COL9A1P20849 MRPS18A-202ENST00000372133 1062 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
COL9A1P20849 SNHG11-205ENST00000421599 1046 ntTSL 3 BASIC18.88■□□□□ 0.61
COL9A1P20849 MCCD1P2-201ENST00000423228 335 ntBASIC18.88■□□□□ 0.61
COL9A1P20849 AL807752.4-201ENST00000439076 580 ntTSL 2 BASIC18.88■□□□□ 0.61
COL9A1P20849 PON3-205ENST00000451904 1053 ntTSL 3 BASIC18.88■□□□□ 0.61
COL9A1P20849 NOP2-220ENST00000545915 630 ntTSL 2 BASIC18.88■□□□□ 0.61
COL9A1P20849 AC004846.2-201ENST00000556578 777 ntTSL 3 BASIC18.88■□□□□ 0.61
COL9A1P20849 FAM57A-205ENST00000572018 373 ntTSL 3 BASIC18.88■□□□□ 0.61
COL9A1P20849 WNT1-202ENST00000613114 1278 ntTSL 5 BASIC18.88■□□□□ 0.61
COL9A1P20849 RUFY1-201ENST00000319449 2646 ntAPPRIS P3 TSL 1 (best) BASIC18.88■□□□□ 0.61
COL9A1P20849 TMEM225B-202ENST00000431679 1314 ntAPPRIS P1 TSL 5 BASIC18.88■□□□□ 0.61
COL9A1P20849 SLC25A41-201ENST00000321510 1532 ntAPPRIS P1 TSL 5 BASIC18.88■□□□□ 0.61
COL9A1P20849 MBIP-203ENST00000416007 1648 ntAPPRIS P3 TSL 1 (best) BASIC18.88■□□□□ 0.61
COL9A1P20849 CDK4-202ENST00000312990 1650 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
COL9A1P20849 AL109659.2-201ENST00000606809 1674 ntBASIC18.88■□□□□ 0.61
COL9A1P20849 FOXK2-201ENST00000335255 5265 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
COL9A1P20849 SLC16A5-206ENST00000580123 2019 ntAPPRIS P2 TSL 2 BASIC18.88■□□□□ 0.61
COL9A1P20849 PRKG2-207ENST00000628926 2623 ntTSL 2 BASIC18.87■□□□□ 0.61
COL9A1P20849 JPH2-201ENST00000342272 1923 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
COL9A1P20849 MATN4-201ENST00000353917 1657 ntTSL 5 BASIC18.87■□□□□ 0.61
COL9A1P20849 ROMO1-204ENST00000374078 498 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
COL9A1P20849 FAM182B-201ENST00000376403 1681 ntAPPRIS P5 TSL 1 (best) BASIC18.87■□□□□ 0.61
COL9A1P20849 AP5S1-203ENST00000379573 1848 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
COL9A1P20849 TTC12-202ENST00000393020 2541 ntTSL 5 BASIC18.87■□□□□ 0.61
COL9A1P20849 MATK-203ENST00000395045 2073 ntAPPRIS P4 TSL 2 BASIC18.87■□□□□ 0.61
COL9A1P20849 PMEPA1-204ENST00000395814 800 ntTSL 3 BASIC18.87■□□□□ 0.61
COL9A1P20849 PVR-204ENST00000406449 1344 ntAPPRIS ALT2 TSL 1 (best) BASIC18.87■□□□□ 0.61
COL9A1P20849 CAMKMT-204ENST00000407131 652 ntTSL 3 BASIC18.87■□□□□ 0.61
COL9A1P20849 FDXR-202ENST00000413947 1809 ntTSL 2 BASIC18.87■□□□□ 0.61
COL9A1P20849 VPS13A-AS1-201ENST00000415172 519 ntTSL 2 BASIC18.87■□□□□ 0.61
COL9A1P20849 KRT18P23-201ENST00000435622 1283 ntBASIC18.87■□□□□ 0.61
COL9A1P20849 MIR503HG-203ENST00000441492 649 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
COL9A1P20849 MPIG6B-210ENST00000480039 790 ntAPPRIS ALT2 TSL 1 (best) BASIC18.87■□□□□ 0.61
COL9A1P20849 ALG1L5P-201ENST00000482043 771 ntBASIC18.87■□□□□ 0.61
COL9A1P20849 GPT-205ENST00000528431 1822 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
COL9A1P20849 ZNF710-AS1-201ENST00000558334 1168 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
COL9A1P20849 ZHX3-212ENST00000558993 1528 ntTSL 5 BASIC18.87■□□□□ 0.61
COL9A1P20849 KATNBL1P6-202ENST00000562413 1466 ntBASIC18.87■□□□□ 0.61
COL9A1P20849 PAN3-AS1-201ENST00000563843 1351 ntBASIC18.87■□□□□ 0.61
COL9A1P20849 PYCR1-207ENST00000577756 1144 ntTSL 2 BASIC18.87■□□□□ 0.61
COL9A1P20849 C1QTNF1-212ENST00000583904 1129 ntAPPRIS P1 TSL 4 BASIC18.87■□□□□ 0.61
COL9A1P20849 MIR6799-201ENST00000620297 69 ntBASIC18.87■□□□□ 0.61
COL9A1P20849 MARK4-211ENST00000622871 1147 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
COL9A1P20849 GNA14-201ENST00000341700 2482 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
COL9A1P20849 MAG-202ENST00000392213 2390 ntAPPRIS P4 TSL 1 (best) BASIC18.86■□□□□ 0.61
COL9A1P20849 KLRG2-201ENST00000340940 2197 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 25.2 ms