Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 GTF2H4-201ENST00000259895 1735 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
SDC1P18827 PCED1A-201ENST00000356872 1706 ntTSL 2 BASIC17.55■□□□□ 0.4
SDC1P18827 TPGS2-219ENST00000593035 1727 ntAPPRIS ALT2 TSL 2 BASIC17.55■□□□□ 0.4
SDC1P18827 SDHAP2-201ENST00000455183 2001 ntBASIC17.55■□□□□ 0.4
SDC1P18827 AL096828.2-201ENST00000567259 1965 ntBASIC17.55■□□□□ 0.4
SDC1P18827 STRA6-209ENST00000563965 2565 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
SDC1P18827 CLASRP-203ENST00000391953 1941 ntTSL 2 BASIC17.55■□□□□ 0.4
SDC1P18827 CKMT1A-202ENST00000413453 1911 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
SDC1P18827 ZBTB46-203ENST00000395104 5198 ntAPPRIS P1 TSL 2 BASIC17.55■□□□□ 0.4
SDC1P18827 SLBP-201ENST00000318386 1635 ntAPPRIS ALT1 TSL 3 BASIC17.55■□□□□ 0.4
SDC1P18827 CSK-201ENST00000220003 2767 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
SDC1P18827 AP005717.1-201ENST00000500705 1899 ntTSL 5 BASIC17.55■□□□□ 0.4
SDC1P18827 UBE2D2-202ENST00000398733 2702 ntAPPRIS P2 TSL 1 (best) BASIC17.55■□□□□ 0.4
SDC1P18827 AC012618.3-203ENST00000426044 917 ntTSL 2 BASIC17.55■□□□□ 0.4
SDC1P18827 PEX26-203ENST00000428061 815 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
SDC1P18827 SLC25A1P2-201ENST00000430693 912 ntBASIC17.55■□□□□ 0.4
SDC1P18827 TSPY7P-201ENST00000431358 1114 ntBASIC17.55■□□□□ 0.4
SDC1P18827 ZNF487-202ENST00000437590 2111 ntTSL 2 BASIC17.55■□□□□ 0.4
SDC1P18827 TSPY1-202ENST00000451548 1160 ntAPPRIS P5 TSL 1 (best) BASIC17.55■□□□□ 0.4
SDC1P18827 AC097641.1-201ENST00000580671 588 ntTSL 4 BASIC17.55■□□□□ 0.4
SDC1P18827 NAT14-202ENST00000587400 416 ntTSL 5 BASIC17.55■□□□□ 0.4
SDC1P18827 AC005786.3-201ENST00000589360 565 ntTSL 3 BASIC17.55■□□□□ 0.4
SDC1P18827 PRKACA-209ENST00000590853 1101 ntTSL 5 BASIC17.55■□□□□ 0.4
SDC1P18827 AL163051.1-201ENST00000569214 1512 ntBASIC17.55■□□□□ 0.4
SDC1P18827 SSC5D-201ENST00000389623 4845 ntAPPRIS P3 TSL 1 (best) BASIC17.55■□□□□ 0.4
SDC1P18827 ZDHHC8P1-204ENST00000433168 2309 ntTSL 2 BASIC17.55■□□□□ 0.4
SDC1P18827 PHGDH-209ENST00000641074 1780 ntBASIC17.55■□□□□ 0.4
SDC1P18827 PCDH1-201ENST00000287008 4793 ntAPPRIS P3 TSL 5 BASIC17.55■□□□□ 0.4
SDC1P18827 EVX2-201ENST00000308618 4203 ntAPPRIS P1 TSL 5 BASIC17.55■□□□□ 0.4
SDC1P18827 DHRS2-201ENST00000250383 1705 ntAPPRIS P3 TSL 1 (best) BASIC17.55■□□□□ 0.4
SDC1P18827 NIFK-201ENST00000285814 1734 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
SDC1P18827 SYT17-207ENST00000568115 1721 ntTSL 5 BASIC17.55■□□□□ 0.4
SDC1P18827 PANX1-202ENST00000436171 2750 ntAPPRIS ALT1 TSL 1 (best) BASIC17.55■□□□□ 0.4
SDC1P18827 HOXB1-202ENST00000577092 1414 ntBASIC17.55■□□□□ 0.4
SDC1P18827 GRB7-202ENST00000394204 1667 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
SDC1P18827 OGFOD2-212ENST00000538755 1949 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
SDC1P18827 TBC1D3I-202ENST00000618620 1900 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
SDC1P18827 NCF1-201ENST00000289473 1396 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
SDC1P18827 SH3GLB2-202ENST00000372559 1365 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
SDC1P18827 PPAN-P2RY11-201ENST00000393796 2385 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
SDC1P18827 MYO19-225ENST00000621344 1640 ntTSL 2 BASIC17.54■□□□□ 0.4
SDC1P18827 PHC1-212ENST00000543824 4292 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
SDC1P18827 TUBA3C-201ENST00000400113 1551 ntAPPRIS P1 TSL 5 BASIC17.54■□□□□ 0.4
SDC1P18827 PPP1R7-207ENST00000407025 1592 ntAPPRIS P1 TSL 5 BASIC17.54■□□□□ 0.4
SDC1P18827 SLC23A3-203ENST00000409878 2010 ntAPPRIS P1 TSL 2 BASIC17.54■□□□□ 0.4
SDC1P18827 SLC23A3-207ENST00000455516 2048 ntTSL 2 BASIC17.54■□□□□ 0.4
SDC1P18827 GSDMD-206ENST00000526406 2496 ntAPPRIS P2 TSL 2 BASIC17.54■□□□□ 0.4
SDC1P18827 SNAPC3-207ENST00000610884 2453 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
SDC1P18827 TMIGD2-201ENST00000301272 1262 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.4
SDC1P18827 CDHR4-201ENST00000343366 1188 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
SDC1P18827 SYCE1L-201ENST00000378644 858 ntAPPRIS P2 TSL 5 BASIC17.54■□□□□ 0.4
SDC1P18827 TNNT3-206ENST00000381579 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
SDC1P18827 PACRGL-207ENST00000502938 810 ntTSL 4 BASIC17.54■□□□□ 0.4
SDC1P18827 TMEM263-208ENST00000551489 621 ntTSL 4 BASIC17.54■□□□□ 0.4
SDC1P18827 AL353719.1-201ENST00000566847 864 ntBASIC17.54■□□□□ 0.4
SDC1P18827 ARHGDIA-207ENST00000580685 1201 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
SDC1P18827 AP000525.1-201ENST00000608286 694 ntBASIC17.54■□□□□ 0.4
SDC1P18827 EIF4ENIF1-202ENST00000344710 3115 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
SDC1P18827 AZIN1-201ENST00000337198 4721 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
SDC1P18827 PCBP3-205ENST00000400310 2168 ntTSL 2 BASIC17.54■□□□□ 0.4
SDC1P18827 ALDH4A1-201ENST00000290597 2124 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
SDC1P18827 ENOPH1-202ENST00000505846 1689 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
SDC1P18827 IRAK3-202ENST00000457197 1853 ntTSL 2 BASIC17.54■□□□□ 0.4
SDC1P18827 HOTTIP-202ENST00000472494 2285 ntTSL 2 BASIC17.54■□□□□ 0.4
SDC1P18827 CCT4-204ENST00000544079 2261 ntTSL 2 BASIC17.54■□□□□ 0.4
SDC1P18827 XKR8-201ENST00000373884 2692 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
SDC1P18827 SCAND1-203ENST00000615116 1371 ntAPPRIS P1 TSL 5 BASIC17.53■□□□□ 0.4
SDC1P18827 APMAP-201ENST00000217456 2430 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
SDC1P18827 SLX1B-SULT1A4-201ENST00000344620 2424 ntTSL 2 BASIC17.53■□□□□ 0.4
SDC1P18827 TMEM132A-201ENST00000005286 3480 ntAPPRIS P3 TSL 5 BASIC17.53■□□□□ 0.4
SDC1P18827 JAM2-202ENST00000400532 1757 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
SDC1P18827 MON1B-202ENST00000439557 1759 ntTSL 2 BASIC17.53■□□□□ 0.4
SDC1P18827 ACTG1-201ENST00000331925 1994 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
SDC1P18827 POMT2-201ENST00000261534 4876 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
SDC1P18827 DDX17-211ENST00000640332 2190 ntAPPRIS P3 TSL 1 (best) BASIC17.53■□□□□ 0.4
SDC1P18827 DDX17-212ENST00000640668 2196 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
SDC1P18827 PCDHA2-203ENST00000526136 5254 ntAPPRIS P2 TSL 1 (best) BASIC17.53■□□□□ 0.4
SDC1P18827 CCDC92-201ENST00000238156 2787 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
SDC1P18827 CADPS2-202ENST00000334010 6045 ntAPPRIS ALT2 TSL 5 BASIC17.53■□□□□ 0.4
SDC1P18827 CALM2-201ENST00000272298 1302 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
SDC1P18827 CALHM2-201ENST00000260743 1859 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
SDC1P18827 KRT16P6-201ENST00000417510 1873 ntTSL 5 BASIC17.53■□□□□ 0.4
SDC1P18827 TNFAIP1-202ENST00000544907 1656 ntTSL 2 BASIC17.53■□□□□ 0.4
SDC1P18827 AC009102.3-201ENST00000623118 1491 ntBASIC17.53■□□□□ 0.4
SDC1P18827 HIST1H2APS4-201ENST00000362070 348 ntBASIC17.53■□□□□ 0.4
SDC1P18827 MIR718-201ENST00000390190 70 ntBASIC17.53■□□□□ 0.4
SDC1P18827 TSPY17P-201ENST00000450329 467 ntBASIC17.53■□□□□ 0.4
SDC1P18827 MLF2-210ENST00000542154 838 ntAPPRIS P1 TSL 5 BASIC17.53■□□□□ 0.4
SDC1P18827 MIR4785-201ENST00000585005 73 ntBASIC17.53■□□□□ 0.4
SDC1P18827 ZNF561-AS1-202ENST00000586614 568 ntTSL 5 BASIC17.53■□□□□ 0.4
SDC1P18827 TNNT1-208ENST00000587465 1065 ntAPPRIS ALT2 TSL 5 BASIC17.53■□□□□ 0.4
SDC1P18827 IMPA2-208ENST00000589238 923 ntTSL 3 BASIC17.53■□□□□ 0.4
SDC1P18827 CR769767.2-201ENST00000622735 460 ntBASIC17.53■□□□□ 0.4
SDC1P18827 AL590094.1-202ENST00000634619 1131 ntTSL 5 BASIC17.53■□□□□ 0.4
SDC1P18827 HNRNPK-202ENST00000360384 2038 ntAPPRIS ALT1 TSL 1 (best) BASIC17.53■□□□□ 0.4
SDC1P18827 FAM110A-201ENST00000246100 1619 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
SDC1P18827 PDLIM3-201ENST00000284767 2589 ntTSL 5 BASIC17.53■□□□□ 0.4
SDC1P18827 NOX4-201ENST00000263317 2388 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
SDC1P18827 SYT8-202ENST00000381968 1424 ntAPPRIS P2 TSL 5 BASIC17.53■□□□□ 0.4
SDC1P18827 TMEM110-MUSTN1-202ENST00000504329 1405 ntAPPRIS P1 TSL 5 BASIC17.53■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 31.9 ms