Protein–RNA interactions for Protein: P13611

VCAN, Versican core protein, humanhuman

Predictions only

Length 3,396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCANP13611 LINC01264-201ENST00000431395 500 ntTSL 3 BASIC18.97■□□□□ 0.63
VCANP13611 FBXO4-206ENST00000509134 1284 ntTSL 5 BASIC18.97■□□□□ 0.63
VCANP13611 AP000344.2-201ENST00000512987 629 ntBASIC18.97■□□□□ 0.63
VCANP13611 ICAM2-205ENST00000578379 1064 ntTSL 5 BASIC18.97■□□□□ 0.63
VCANP13611 ICAM2-206ENST00000578892 1056 ntTSL 3 BASIC18.97■□□□□ 0.63
VCANP13611 AC010618.3-201ENST00000596643 775 ntTSL 3 BASIC18.97■□□□□ 0.63
VCANP13611 WIPI2-211ENST00000484262 1504 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
VCANP13611 DMRTB1-201ENST00000371445 1910 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
VCANP13611 ACBD6-201ENST00000367595 1670 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
VCANP13611 AC092720.2-201ENST00000602388 1665 ntBASIC18.96■□□□□ 0.63
VCANP13611 ZNF524-201ENST00000301073 1102 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
VCANP13611 PDLIM7-201ENST00000355572 977 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
VCANP13611 LRRC30-201ENST00000383467 923 ntAPPRIS P1 BASIC18.96■□□□□ 0.63
VCANP13611 CEND1P1-201ENST00000451006 455 ntBASIC18.96■□□□□ 0.63
VCANP13611 PARP8-218ENST00000513738 596 ntTSL 4 BASIC18.96■□□□□ 0.63
VCANP13611 TCAP-202ENST00000578283 583 ntTSL 5 BASIC18.96■□□□□ 0.63
VCANP13611 ACHE-201ENST00000241069 2172 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
VCANP13611 SLC39A5-209ENST00000454355 1968 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
VCANP13611 DNAJA4-202ENST00000394852 3116 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
VCANP13611 KDM8-202ENST00000441782 1612 ntTSL 2 BASIC18.96■□□□□ 0.63
VCANP13611 TNNT3-203ENST00000381557 1019 ntAPPRIS ALT2 TSL 5 BASIC18.96■□□□□ 0.63
VCANP13611 ZNF655-216ENST00000449244 544 ntTSL 4 BASIC18.96■□□□□ 0.63
VCANP13611 AC108751.1-201ENST00000490852 363 ntBASIC18.96■□□□□ 0.63
VCANP13611 LACTB2-203ENST00000522447 1034 ntAPPRIS P1 TSL 2 BASIC18.96■□□□□ 0.63
VCANP13611 BEST4-201ENST00000372207 2047 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
VCANP13611 SPSB1-202ENST00000357898 1439 ntAPPRIS P1 TSL 5 BASIC18.96■□□□□ 0.63
VCANP13611 AC087289.2-201ENST00000587267 1419 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
VCANP13611 ACHE-203ENST00000411582 2179 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
VCANP13611 TREX2-203ENST00000338525 2116 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
VCANP13611 DFNA5-203ENST00000409970 2005 ntTSL 5 BASIC18.96■□□□□ 0.63
VCANP13611 TYROBP-201ENST00000262629 568 ntAPPRIS P3 TSL 1 (best) BASIC18.96■□□□□ 0.63
VCANP13611 ATP5G2P4-201ENST00000442175 420 ntBASIC18.96■□□□□ 0.63
VCANP13611 DNAJC28-203ENST00000402202 1480 ntAPPRIS P1 TSL 5 BASIC18.96■□□□□ 0.63
VCANP13611 CHTOP-204ENST00000368694 2096 ntAPPRIS P3 TSL 1 (best) BASIC18.96■□□□□ 0.63
VCANP13611 TRMU-201ENST00000290846 1940 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
VCANP13611 RARA-202ENST00000394081 2285 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
VCANP13611 CCM2-202ENST00000381112 1881 ntAPPRIS ALT2 TSL 2 BASIC18.95■□□□□ 0.62
VCANP13611 PRUNE2-202ENST00000376713 1069 ntTSL 5 BASIC18.95■□□□□ 0.62
VCANP13611 AC004945.1-201ENST00000416738 983 ntBASIC18.95■□□□□ 0.62
VCANP13611 COX6C-204ENST00000520271 571 ntAPPRIS P1 TSL 2 BASIC18.95■□□□□ 0.62
VCANP13611 CD4-210ENST00000541982 1187 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
VCANP13611 ELOF1-208ENST00000591912 899 ntTSL 5 BASIC18.95■□□□□ 0.62
VCANP13611 KRT8P7-201ENST00000533003 1432 ntBASIC18.95■□□□□ 0.62
VCANP13611 CD1B-201ENST00000368168 1395 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
VCANP13611 KREMEN2-202ENST00000319500 1882 ntAPPRIS ALT2 TSL 1 (best) BASIC18.95■□□□□ 0.62
VCANP13611 DNAAF3-207ENST00000527223 2228 ntAPPRIS ALT2 TSL 2 BASIC18.95■□□□□ 0.62
VCANP13611 PAQR6-215ENST00000623241 1961 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
VCANP13611 P2RY6-209ENST00000540342 1611 ntAPPRIS P1 TSL 2 BASIC18.95■□□□□ 0.62
VCANP13611 NKX2-6-201ENST00000325017 906 ntAPPRIS P1 TSL 2 BASIC18.95■□□□□ 0.62
VCANP13611 SH3TC1-202ENST00000382521 829 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
VCANP13611 FAM159B-201ENST00000389074 847 ntAPPRIS P1 TSL 2 BASIC18.95■□□□□ 0.62
VCANP13611 ICAM2-203ENST00000449662 1221 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
VCANP13611 L2HGDH-206ENST00000555610 804 ntTSL 5 BASIC18.95■□□□□ 0.62
VCANP13611 AL138831.2-201ENST00000606564 490 ntBASIC18.95■□□□□ 0.62
VCANP13611 LINC01521-201ENST00000504184 1943 ntBASIC18.95■□□□□ 0.62
VCANP13611 LIMS2-202ENST00000355119 2045 ntAPPRIS ALT1 TSL 1 (best) BASIC18.95■□□□□ 0.62
VCANP13611 TPSAB1-202ENST00000461509 1357 ntAPPRIS ALT2 TSL 1 (best) BASIC18.95■□□□□ 0.62
VCANP13611 ZDHHC11-209ENST00000511539 1303 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
VCANP13611 ZDHHC11B-204ENST00000622126 1301 ntTSL 5 BASIC18.95■□□□□ 0.62
VCANP13611 GPR89P-201ENST00000407924 1495 ntBASIC18.95■□□□□ 0.62
VCANP13611 SENP5-204ENST00000445299 2491 ntTSL 2 BASIC18.95■□□□□ 0.62
VCANP13611 AC023141.5-201ENST00000458585 616 ntBASIC18.95■□□□□ 0.62
VCANP13611 SLC35F5-203ENST00000409342 2284 ntTSL 2 BASIC18.94■□□□□ 0.62
VCANP13611 FXR2-201ENST00000250113 2957 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
VCANP13611 GPR50-AS1-201ENST00000454196 1620 ntTSL 2 BASIC18.94■□□□□ 0.62
VCANP13611 NUDT17-201ENST00000334513 1473 ntAPPRIS P1 TSL 5 BASIC18.94■□□□□ 0.62
VCANP13611 HGFAC-204ENST00000511533 2016 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
VCANP13611 FIP1L1-201ENST00000306932 1878 ntAPPRIS ALT2 TSL 1 (best) BASIC18.94■□□□□ 0.62
VCANP13611 PHYHD1-201ENST00000308941 1599 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
VCANP13611 PDIA2-202ENST00000404312 1575 ntAPPRIS ALT2 TSL 5 BASIC18.94■□□□□ 0.62
VCANP13611 AL139288.1-201ENST00000623748 933 ntBASIC18.94■□□□□ 0.62
VCANP13611 ANKRD20A8P-203ENST00000641373 517 ntBASIC18.94■□□□□ 0.62
VCANP13611 MANBAL-204ENST00000397151 1503 ntAPPRIS P1 TSL 3 BASIC18.94■□□□□ 0.62
VCANP13611 MANBAL-205ENST00000397152 1539 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
VCANP13611 TCAIM-203ENST00000396078 2178 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
VCANP13611 SMAD7-201ENST00000262158 3087 ntAPPRIS P3 TSL 1 (best) BASIC18.94■□□□□ 0.62
VCANP13611 LYN-202ENST00000519728 2297 ntAPPRIS P3 TSL 1 (best) BASIC18.94■□□□□ 0.62
VCANP13611 ARSA-202ENST00000356098 1895 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
VCANP13611 GPSM3-206ENST00000375040 1476 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
VCANP13611 GNA14-201ENST00000341700 2482 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
VCANP13611 KLHDC4-204ENST00000353170 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC18.94■□□□□ 0.62
VCANP13611 ACOT2-201ENST00000238651 1774 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
VCANP13611 NDUFA4L2-201ENST00000393825 1186 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
VCANP13611 SMIM4-202ENST00000476842 522 ntTSL 4 BASIC18.94■□□□□ 0.62
VCANP13611 AC105339.3-201ENST00000560043 636 ntBASIC18.94■□□□□ 0.62
VCANP13611 CECR7-204ENST00000609932 568 ntTSL 2 BASIC18.94■□□□□ 0.62
VCANP13611 HFE2-206ENST00000634927 506 ntTSL 4 BASIC18.94■□□□□ 0.62
VCANP13611 NEK2-205ENST00000540251 1318 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
VCANP13611 AC097374.2-201ENST00000618617 1306 ntBASIC18.94■□□□□ 0.62
VCANP13611 FBXL15-202ENST00000369956 2344 ntAPPRIS ALT1 TSL 1 (best) BASIC18.94■□□□□ 0.62
VCANP13611 TMEM59-202ENST00000371337 600 ntTSL 2 BASIC18.93■□□□□ 0.62
VCANP13611 NME2P1-201ENST00000426182 414 ntBASIC18.93■□□□□ 0.62
VCANP13611 AC068898.1-201ENST00000440750 335 ntTSL 3 BASIC18.93■□□□□ 0.62
VCANP13611 FAU-209ENST00000531743 697 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
VCANP13611 CCND1-203ENST00000536559 553 ntTSL 3 BASIC18.93■□□□□ 0.62
VCANP13611 FAM57A-205ENST00000572018 373 ntTSL 3 BASIC18.93■□□□□ 0.62
VCANP13611 AC018521.5-202ENST00000577279 374 ntTSL 3 BASIC18.93■□□□□ 0.62
VCANP13611 DHRS7B-206ENST00000579303 1479 ntAPPRIS ALT1 TSL 5 BASIC18.93■□□□□ 0.62
VCANP13611 SLC1A5-203ENST00000542575 2882 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
VCANP13611 ARID3C-201ENST00000378909 1411 ntAPPRIS P1 TSL 2 BASIC18.93■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 43.2 ms