Protein–RNA interactions for Protein: P0DP91

CSB-PGBD3, Chimeric ERCC6-PGBD3 protein, humanhuman

Predictions only

Length 1,061 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSB-PGBD3P0DP91 NECTIN1-201ENST00000264025 5840 ntAPPRIS P1 TSL 1 (best) BASIC24.35■■□□□ 1.49
CSB-PGBD3P0DP91 CTCF-202ENST00000401394 2978 ntTSL 1 (best) BASIC24.35■■□□□ 1.49
CSB-PGBD3P0DP91 MOGS-202ENST00000409065 2668 ntTSL 5 BASIC24.35■■□□□ 1.49
CSB-PGBD3P0DP91 IL17RC-203ENST00000403601 2388 ntAPPRIS ALT2 TSL 1 (best) BASIC24.35■■□□□ 1.49
CSB-PGBD3P0DP91 AC112777.1-201ENST00000540175 1423 ntBASIC24.35■■□□□ 1.49
CSB-PGBD3P0DP91 CORO6-212ENST00000584969 1416 ntAPPRIS ALT1 TSL 5 BASIC24.35■■□□□ 1.49
CSB-PGBD3P0DP91 ANKRD65-201ENST00000427211 1976 ntTSL 1 (best) BASIC24.34■■□□□ 1.49
CSB-PGBD3P0DP91 NDRG2-227ENST00000554143 1980 ntAPPRIS ALT1 TSL 2 BASIC24.34■■□□□ 1.49
CSB-PGBD3P0DP91 HCK-207ENST00000520553 2101 ntAPPRIS ALT2 TSL 1 (best) BASIC24.34■■□□□ 1.49
CSB-PGBD3P0DP91 ST8SIA5-202ENST00000536490 1499 ntTSL 2 BASIC24.34■■□□□ 1.49
CSB-PGBD3P0DP91 PAN3-AS1-201ENST00000563843 1351 ntBASIC24.34■■□□□ 1.49
CSB-PGBD3P0DP91 CLDN7-202ENST00000397317 1228 ntAPPRIS P1 TSL 1 (best) BASIC24.34■■□□□ 1.49
CSB-PGBD3P0DP91 AC092183.1-201ENST00000469884 875 ntBASIC24.34■■□□□ 1.49
CSB-PGBD3P0DP91 AL807752.7-201ENST00000471521 989 ntAPPRIS P1 TSL 5 BASIC24.34■■□□□ 1.49
CSB-PGBD3P0DP91 GABARAP-204ENST00000571253 837 ntTSL 2 BASIC24.34■■□□□ 1.49
CSB-PGBD3P0DP91 C19orf25-210ENST00000591027 574 ntTSL 4 BASIC24.34■■□□□ 1.49
CSB-PGBD3P0DP91 ANO2-212ENST00000612575 1087 ntTSL 1 (best) BASIC24.34■■□□□ 1.49
CSB-PGBD3P0DP91 MMP11-201ENST00000215743 2291 ntAPPRIS P1 TSL 1 (best) BASIC24.34■■□□□ 1.49
CSB-PGBD3P0DP91 P2RY6-201ENST00000349767 1700 ntAPPRIS P1 TSL 2 BASIC24.34■■□□□ 1.49
CSB-PGBD3P0DP91 PRRT4-207ENST00000535159 2897 ntAPPRIS P1 TSL 5 BASIC24.34■■□□□ 1.49
CSB-PGBD3P0DP91 HOXC13-201ENST00000243056 2423 ntAPPRIS P1 TSL 1 (best) BASIC24.34■■□□□ 1.49
CSB-PGBD3P0DP91 NPNT-204ENST00000453617 2419 ntAPPRIS ALT1 TSL 2 BASIC24.34■■□□□ 1.49
CSB-PGBD3P0DP91 AC016065.1-201ENST00000500118 2413 ntTSL 2 BASIC24.34■■□□□ 1.49
CSB-PGBD3P0DP91 C2orf81-201ENST00000290390 2227 ntAPPRIS P5 TSL 5 BASIC24.34■■□□□ 1.49
CSB-PGBD3P0DP91 RELA-202ENST00000406246 2700 ntAPPRIS P3 TSL 1 (best) BASIC24.34■■□□□ 1.49
CSB-PGBD3P0DP91 CYP27A1-201ENST00000258415 2286 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.49
CSB-PGBD3P0DP91 STX11-201ENST00000367568 1926 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.49
CSB-PGBD3P0DP91 KRT3-201ENST00000417996 2319 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.49
CSB-PGBD3P0DP91 UPP1-203ENST00000395564 1375 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.49
CSB-PGBD3P0DP91 FAM110A-201ENST00000246100 1619 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.49
CSB-PGBD3P0DP91 TFDP2-202ENST00000467072 1853 ntAPPRIS P3 TSL 1 (best) BASIC24.33■■□□□ 1.49
CSB-PGBD3P0DP91 CCS-201ENST00000310190 942 ntTSL 5 BASIC24.33■■□□□ 1.49
CSB-PGBD3P0DP91 MRPL52-202ENST00000355151 1118 ntAPPRIS ALT1 TSL 1 (best) BASIC24.33■■□□□ 1.49
CSB-PGBD3P0DP91 BOLA1-202ENST00000369152 859 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.49
CSB-PGBD3P0DP91 MIR149-201ENST00000384879 89 ntBASIC24.33■■□□□ 1.49
CSB-PGBD3P0DP91 GRM5-203ENST00000393294 1268 ntTSL 1 (best) BASIC24.33■■□□□ 1.49
CSB-PGBD3P0DP91 UPK3A-202ENST00000396082 627 ntAPPRIS ALT2 TSL 1 (best) BASIC24.33■■□□□ 1.49
CSB-PGBD3P0DP91 MRPL52-203ENST00000397496 1111 ntAPPRIS P3 TSL 2 BASIC24.33■■□□□ 1.49
CSB-PGBD3P0DP91 RBM17P3-201ENST00000417687 1192 ntBASIC24.33■■□□□ 1.49
CSB-PGBD3P0DP91 AP001062.3-201ENST00000422357 704 ntTSL 2 BASIC24.33■■□□□ 1.49
CSB-PGBD3P0DP91 KRT18P41-201ENST00000518924 1277 ntBASIC24.33■■□□□ 1.49
CSB-PGBD3P0DP91 RDH5-202ENST00000547072 1054 ntTSL 5 BASIC24.33■■□□□ 1.49
CSB-PGBD3P0DP91 ANAPC11-210ENST00000574924 722 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.49
CSB-PGBD3P0DP91 ZPBP2-204ENST00000584588 1277 ntTSL 5 BASIC24.33■■□□□ 1.49
CSB-PGBD3P0DP91 AP001269.4-201ENST00000609611 512 ntBASIC24.33■■□□□ 1.49
CSB-PGBD3P0DP91 TMPO-204ENST00000393053 2374 ntTSL 1 (best) BASIC24.33■■□□□ 1.49
CSB-PGBD3P0DP91 EEF1D-246ENST00000532741 2387 ntTSL 1 (best) BASIC24.33■■□□□ 1.49
CSB-PGBD3P0DP91 KCNS2-201ENST00000287042 5219 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.49
CSB-PGBD3P0DP91 PLEKHM2-202ENST00000375799 4122 ntAPPRIS P2 TSL 1 (best) BASIC24.33■■□□□ 1.49
CSB-PGBD3P0DP91 STAP2-201ENST00000594605 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC24.33■■□□□ 1.49
CSB-PGBD3P0DP91 ZNF707-201ENST00000358656 2183 ntAPPRIS P1 TSL 2 BASIC24.33■■□□□ 1.48
CSB-PGBD3P0DP91 UNKL-205ENST00000397464 2180 ntTSL 2 BASIC24.33■■□□□ 1.48
CSB-PGBD3P0DP91 DOCK9-206ENST00000427887 4176 ntTSL 1 (best) BASIC24.33■■□□□ 1.48
CSB-PGBD3P0DP91 FBXL15-202ENST00000369956 2344 ntAPPRIS ALT1 TSL 1 (best) BASIC24.33■■□□□ 1.48
CSB-PGBD3P0DP91 ME2-218ENST00000640965 2476 ntTSL 5 BASIC24.33■■□□□ 1.48
CSB-PGBD3P0DP91 ENDOV-225ENST00000522751 1475 ntTSL 5 BASIC24.32■■□□□ 1.48
CSB-PGBD3P0DP91 AL158211.5-201ENST00000623583 2518 ntBASIC24.32■■□□□ 1.48
CSB-PGBD3P0DP91 ASCL4-201ENST00000342331 2260 ntAPPRIS P1 BASIC24.32■■□□□ 1.48
CSB-PGBD3P0DP91 RELB-207ENST00000625761 2279 ntAPPRIS ALT2 TSL 5 BASIC24.32■■□□□ 1.48
CSB-PGBD3P0DP91 DLK2-201ENST00000357338 2038 ntAPPRIS P3 TSL 2 BASIC24.32■■□□□ 1.48
CSB-PGBD3P0DP91 FTMT-201ENST00000321339 879 ntAPPRIS P1 BASIC24.32■■□□□ 1.48
CSB-PGBD3P0DP91 TNFSF13-204ENST00000396542 726 ntTSL 3 BASIC24.32■■□□□ 1.48
CSB-PGBD3P0DP91 COX10-202ENST00000429152 875 ntTSL 2 BASIC24.32■■□□□ 1.48
CSB-PGBD3P0DP91 AP000688.4-201ENST00000436303 446 ntTSL 3 BASIC24.32■■□□□ 1.48
CSB-PGBD3P0DP91 AC068472.1-201ENST00000474589 881 ntBASIC24.32■■□□□ 1.48
CSB-PGBD3P0DP91 SMIM4-202ENST00000476842 522 ntTSL 4 BASIC24.32■■□□□ 1.48
CSB-PGBD3P0DP91 AC113404.2-201ENST00000507884 177 ntBASIC24.32■■□□□ 1.48
CSB-PGBD3P0DP91 AC055811.1-201ENST00000584203 1231 ntTSL 5 BASIC24.32■■□□□ 1.48
CSB-PGBD3P0DP91 AC008481.3-201ENST00000585656 727 ntAPPRIS P1 TSL 5 BASIC24.32■■□□□ 1.48
CSB-PGBD3P0DP91 AC008687.5-201ENST00000593746 558 ntBASIC24.32■■□□□ 1.48
CSB-PGBD3P0DP91 TEX264-216ENST00000614067 1174 ntAPPRIS ALT2 TSL 3 BASIC24.32■■□□□ 1.48
CSB-PGBD3P0DP91 PEX6-201ENST00000244546 2696 ntTSL 1 (best) BASIC24.32■■□□□ 1.48
CSB-PGBD3P0DP91 LINC00937-205ENST00000538304 2157 ntTSL 1 (best) BASIC24.32■■□□□ 1.48
CSB-PGBD3P0DP91 BTG3-201ENST00000339775 1485 ntTSL 1 (best) BASIC24.32■■□□□ 1.48
CSB-PGBD3P0DP91 GNAI1-201ENST00000351004 3347 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
CSB-PGBD3P0DP91 BLCAP-208ENST00000414542 2205 ntAPPRIS P1 TSL 3 BASIC24.31■■□□□ 1.48
CSB-PGBD3P0DP91 RNPS1-219ENST00000566397 1685 ntTSL 2 BASIC24.31■■□□□ 1.48
CSB-PGBD3P0DP91 GPR146-201ENST00000397095 1969 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
CSB-PGBD3P0DP91 RAMP1-201ENST00000254661 910 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
CSB-PGBD3P0DP91 RPS2P28-201ENST00000314255 741 ntBASIC24.31■■□□□ 1.48
CSB-PGBD3P0DP91 ADIPOR1-202ENST00000367254 1116 ntTSL 1 (best) BASIC24.31■■□□□ 1.48
CSB-PGBD3P0DP91 INPP5F-203ENST00000369081 874 ntTSL 1 (best) BASIC24.31■■□□□ 1.48
CSB-PGBD3P0DP91 YIF1B-204ENST00000392124 1404 ntTSL 1 (best) BASIC24.31■■□□□ 1.48
CSB-PGBD3P0DP91 AP001058.1-201ENST00000423967 463 ntTSL 2 BASIC24.31■■□□□ 1.48
CSB-PGBD3P0DP91 NAPRT-203ENST00000435154 1877 ntTSL 2 BASIC24.31■■□□□ 1.48
CSB-PGBD3P0DP91 TMEM25-225ENST00000533102 1410 ntTSL 1 (best) BASIC24.31■■□□□ 1.48
CSB-PGBD3P0DP91 AC010632.1-201ENST00000590376 572 ntTSL 4 BASIC24.31■■□□□ 1.48
CSB-PGBD3P0DP91 GZMM-202ENST00000592501 941 ntTSL 3 BASIC24.31■■□□□ 1.48
CSB-PGBD3P0DP91 CDK13-202ENST00000340829 5066 ntAPPRIS ALT1 TSL 1 (best) BASIC24.31■■□□□ 1.48
CSB-PGBD3P0DP91 NHLRC1-201ENST00000340650 2248 ntAPPRIS P1 BASIC24.31■■□□□ 1.48
CSB-PGBD3P0DP91 MTFR1L-202ENST00000374301 2099 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
CSB-PGBD3P0DP91 EEF1A1-203ENST00000331523 1923 ntAPPRIS P1 TSL 5 BASIC24.31■■□□□ 1.48
CSB-PGBD3P0DP91 TBC1D9-201ENST00000442267 5306 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
CSB-PGBD3P0DP91 ARHGAP8-201ENST00000336963 1487 ntTSL 1 (best) BASIC24.31■■□□□ 1.48
CSB-PGBD3P0DP91 ILDR1-203ENST00000393631 1456 ntTSL 1 (best) BASIC24.31■■□□□ 1.48
CSB-PGBD3P0DP91 ERLEC1-202ENST00000378239 2271 ntAPPRIS ALT2 TSL 1 (best) BASIC24.31■■□□□ 1.48
CSB-PGBD3P0DP91 GGT6-202ENST00000381550 2145 ntTSL 2 BASIC24.31■■□□□ 1.48
CSB-PGBD3P0DP91 DALRD3-201ENST00000313778 1968 ntTSL 2 BASIC24.31■■□□□ 1.48
CSB-PGBD3P0DP91 FGF2-202ENST00000608478 3880 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
CSB-PGBD3P0DP91 WDR90-201ENST00000293879 5488 ntAPPRIS P2 TSL 5 BASIC24.31■■□□□ 1.48
Retrieved 100 of 98,524 protein–RNA pairs in 24.2 ms