Protein–RNA interactions for Protein: P02649

APOE, Apolipoprotein E, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOEP02649 BDKRB1-202ENST00000553356 1526 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
APOEP02649 TYMS-203ENST00000323274 1662 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
APOEP02649 AC012615.6-201ENST00000593201 1697 ntTSL 2 BASIC19.3■□□□□ 0.68
APOEP02649 SCD5-201ENST00000273908 1995 ntTSL 2 BASIC19.3■□□□□ 0.68
APOEP02649 SEPT8-201ENST00000296873 4394 ntAPPRIS P2 TSL 1 (best) BASIC19.3■□□□□ 0.68
APOEP02649 KLHL40-201ENST00000287777 2517 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
APOEP02649 TULP1-208ENST00000614066 2084 ntAPPRIS ALT2 TSL 5 BASIC19.29■□□□□ 0.68
APOEP02649 LLGL2-203ENST00000392550 3509 ntAPPRIS P2 TSL 1 (best) BASIC19.29■□□□□ 0.68
APOEP02649 IMP3-201ENST00000314852 2028 ntAPPRIS P1 TSL 2 BASIC19.29■□□□□ 0.68
APOEP02649 CNNM3-202ENST00000377060 3308 ntTSL 2 BASIC19.29■□□□□ 0.68
APOEP02649 PLA2G7-201ENST00000274793 1882 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
APOEP02649 TOX2-205ENST00000423191 1709 ntTSL 2 BASIC19.29■□□□□ 0.68
APOEP02649 ARHGAP8-202ENST00000356099 1584 ntAPPRIS P3 TSL 1 (best) BASIC19.29■□□□□ 0.68
APOEP02649 HS2ST1-202ENST00000370551 1585 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
APOEP02649 ATRIP-201ENST00000320211 2590 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
APOEP02649 CRADD-202ENST00000542893 1403 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
APOEP02649 TWIST2-202ENST00000612363 1404 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
APOEP02649 PDLIM4-201ENST00000253754 2282 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
APOEP02649 LCE4A-202ENST00000368777 672 ntAPPRIS P1 TSL 2 BASIC19.29■□□□□ 0.68
APOEP02649 AC034232.1-201ENST00000506026 1064 ntBASIC19.29■□□□□ 0.68
APOEP02649 APBB3-216ENST00000511201 1014 ntTSL 5 BASIC19.29■□□□□ 0.68
APOEP02649 LY6E-210ENST00000521182 1079 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
APOEP02649 AZIN1-AS1-214ENST00000522850 473 ntTSL 3 BASIC19.29■□□□□ 0.68
APOEP02649 LTBR-211ENST00000543190 785 ntTSL 3 BASIC19.29■□□□□ 0.68
APOEP02649 AC021739.3-201ENST00000557908 855 ntTSL 2 BASIC19.29■□□□□ 0.68
APOEP02649 NME3-204ENST00000563498 920 ntTSL 2 BASIC19.29■□□□□ 0.68
APOEP02649 C17orf62-221ENST00000581196 668 ntTSL 4 BASIC19.29■□□□□ 0.68
APOEP02649 PTGIR-204ENST00000596260 1009 ntTSL 2 BASIC19.29■□□□□ 0.68
APOEP02649 MAGED2-213ENST00000627068 1811 ntAPPRIS ALT2 TSL 5 BASIC19.29■□□□□ 0.68
APOEP02649 FAM182B-201ENST00000376403 1681 ntAPPRIS P5 TSL 1 (best) BASIC19.29■□□□□ 0.68
APOEP02649 ZNF787-202ENST00000587279 1657 ntTSL 2 BASIC19.29■□□□□ 0.68
APOEP02649 L3HYPDH-201ENST00000247194 1527 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
APOEP02649 HEXIM2-201ENST00000307275 1528 ntAPPRIS P1 TSL 2 BASIC19.29■□□□□ 0.68
APOEP02649 ZBTB8A-201ENST00000316459 1943 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
APOEP02649 ZDHHC20-201ENST00000320220 1351 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
APOEP02649 RNF135-201ENST00000324689 1905 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
APOEP02649 TAF6-211ENST00000453269 2464 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
APOEP02649 NUMBL-202ENST00000540131 1931 ntAPPRIS ALT2 TSL 2 BASIC19.29■□□□□ 0.68
APOEP02649 COBL-210ENST00000632460 1941 ntTSL 5 BASIC19.29■□□□□ 0.68
APOEP02649 ITGB5-201ENST00000296181 4372 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
APOEP02649 SMARCC2-201ENST00000267064 4076 ntAPPRIS P4 TSL 1 (best) BASIC19.29■□□□□ 0.68
APOEP02649 PTN-201ENST00000348225 1614 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
APOEP02649 DISP3-202ENST00000304391 1495 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
APOEP02649 EEF1AKMT2-201ENST00000368836 1462 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
APOEP02649 PDE9A-206ENST00000380328 1875 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
APOEP02649 IFRD2-204ENST00000436390 2275 ntAPPRIS P1 TSL 2 BASIC19.28■□□□□ 0.68
APOEP02649 DKK3-202ENST00000396505 2650 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
APOEP02649 PDE6B-202ENST00000429163 2120 ntTSL 2 BASIC19.28■□□□□ 0.68
APOEP02649 CD19-206ENST00000567541 1707 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
APOEP02649 ATP10A-201ENST00000356865 6680 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
APOEP02649 LCORL-201ENST00000326877 5604 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
APOEP02649 MTA1-207ENST00000435036 2888 ntTSL 5 BASIC19.28■□□□□ 0.68
APOEP02649 OSR2-201ENST00000297565 1838 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
APOEP02649 C19orf25-203ENST00000585675 1837 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
APOEP02649 KLHDC4-227ENST00000622456 1422 ntTSL 5 BASIC19.28■□□□□ 0.68
APOEP02649 PNPLA2-201ENST00000336615 2428 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
APOEP02649 OXT-201ENST00000217386 513 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
APOEP02649 CHTOP-202ENST00000368687 1094 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
APOEP02649 RASGRP2-205ENST00000377489 583 ntTSL 3 BASIC19.28■□□□□ 0.68
APOEP02649 AC004080.5-201ENST00000498652 368 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
APOEP02649 CNTD2-203ENST00000513948 787 ntAPPRIS ALT2 TSL 2 BASIC19.28■□□□□ 0.68
APOEP02649 DRAP1-205ENST00000527119 581 ntTSL 5 BASIC19.28■□□□□ 0.68
APOEP02649 REEP1-207ENST00000535845 1196 ntTSL 2 BASIC19.28■□□□□ 0.68
APOEP02649 UQCR11-201ENST00000585671 753 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
APOEP02649 AC004076.1-201ENST00000596831 664 ntAPPRIS P1 TSL 2 BASIC19.28■□□□□ 0.68
APOEP02649 ZNF534-205ENST00000617900 1085 ntTSL 2 BASIC19.28■□□□□ 0.68
APOEP02649 EBLN3P-205ENST00000629870 958 ntTSL 3 BASIC19.28■□□□□ 0.68
APOEP02649 PNKP-224ENST00000631020 1545 ntTSL 5 BASIC19.28■□□□□ 0.68
APOEP02649 GAS2L1P2-202ENST00000442849 2262 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
APOEP02649 AC090164.3-201ENST00000610780 2143 ntBASIC19.28■□□□□ 0.68
APOEP02649 GPR135-201ENST00000395116 4578 ntAPPRIS P1 BASIC19.28■□□□□ 0.68
APOEP02649 BTG3-201ENST00000339775 1485 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
APOEP02649 SLC5A10-203ENST00000395645 2069 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
APOEP02649 SNAI3-AS1-205ENST00000568633 2096 ntBASIC19.28■□□□□ 0.68
APOEP02649 ARSA-203ENST00000395619 1824 ntAPPRIS P1 TSL 5 BASIC19.28■□□□□ 0.68
APOEP02649 DOK4-218ENST00000569548 1848 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
APOEP02649 GUCA1A-205ENST00000541991 1921 ntTSL 5 BASIC19.27■□□□□ 0.68
APOEP02649 UBE2QL1-201ENST00000399816 4317 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
APOEP02649 SIGLEC10-204ENST00000436984 1776 ntTSL 2 BASIC19.27■□□□□ 0.68
APOEP02649 JAG1-201ENST00000254958 6048 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
APOEP02649 CCKBR-203ENST00000525462 2138 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
APOEP02649 PHF20L1-209ENST00000395386 6237 ntAPPRIS P1 TSL 5 BASIC19.27■□□□□ 0.68
APOEP02649 EFEMP2-210ENST00000528176 1504 ntTSL 5 BASIC19.27■□□□□ 0.68
APOEP02649 NAF1-202ENST00000422287 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.68
APOEP02649 NUDT8-201ENST00000301490 809 ntAPPRIS P3 TSL 1 (best) BASIC19.27■□□□□ 0.68
APOEP02649 LCE3D-201ENST00000368787 613 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
APOEP02649 YPEL3-201ENST00000398838 935 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
APOEP02649 SELENOF-203ENST00000401030 727 ntTSL 2 BASIC19.27■□□□□ 0.68
APOEP02649 PLCB1-204ENST00000404098 1260 ntTSL 3 BASIC19.27■□□□□ 0.68
APOEP02649 ST6GALNAC4P1-201ENST00000435385 499 ntBASIC19.27■□□□□ 0.68
APOEP02649 TMA7-201ENST00000438607 561 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
APOEP02649 ELOVL2-AS1-202ENST00000456616 903 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
APOEP02649 SEC1P-202ENST00000473944 940 ntBASIC19.27■□□□□ 0.68
APOEP02649 FIS1-207ENST00000474120 915 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
APOEP02649 CCNG1-211ENST00000512163 919 ntTSL 2 BASIC19.27■□□□□ 0.68
APOEP02649 CD81-212ENST00000526072 1172 ntTSL 5 BASIC19.27■□□□□ 0.68
APOEP02649 DCTN5-208ENST00000568589 772 ntTSL 2 BASIC19.27■□□□□ 0.68
APOEP02649 CACNA1A-215ENST00000635727 7536 ntAPPRIS ALT2 TSL 5 BASIC19.27■□□□□ 0.68
APOEP02649 RABL2B-205ENST00000395595 2428 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.68
APOEP02649 PSMD3-201ENST00000264639 2158 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 52.3 ms