Protein–RNA interactions for Protein: P01130

LDLR, Low-density lipoprotein receptor, humanhuman

Predictions only

Length 860 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDLRP01130 AC006011.2-201ENST00000621313 1158 ntBASIC17.81■□□□□ 0.44
LDLRP01130 MTFP1-206ENST00000629597 482 ntTSL 5 BASIC17.81■□□□□ 0.44
LDLRP01130 PLK1-201ENST00000300093 2227 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
LDLRP01130 ANKRD13D-201ENST00000308440 2219 ntTSL 2 BASIC17.81■□□□□ 0.44
LDLRP01130 HS2ST1-202ENST00000370551 1585 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
LDLRP01130 TPD52-211ENST00000519303 1594 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
LDLRP01130 AL162741.1-201ENST00000565563 1558 ntBASIC17.81■□□□□ 0.44
LDLRP01130 C18orf21-205ENST00000592875 1581 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
LDLRP01130 PRDM8-203ENST00000504452 3706 ntAPPRIS P1 TSL 5 BASIC17.81■□□□□ 0.44
LDLRP01130 TSG101-201ENST00000251968 1824 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
LDLRP01130 DCLK1-203ENST00000379892 2101 ntTSL 5 BASIC17.81■□□□□ 0.44
LDLRP01130 SNAP23-201ENST00000249647 2687 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
LDLRP01130 TCF4-201ENST00000354452 3482 ntAPPRIS ALT1 TSL 5 BASIC17.81■□□□□ 0.44
LDLRP01130 PDZD7-201ENST00000370215 2032 ntTSL 2 BASIC17.81■□□□□ 0.44
LDLRP01130 RAB4B-EGLN2-201ENST00000594136 2554 ntAPPRIS P1 TSL 2 BASIC17.81■□□□□ 0.44
LDLRP01130 TTLL12-201ENST00000216129 3385 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
LDLRP01130 FIBIN-201ENST00000318627 1938 ntAPPRIS P1 BASIC17.8■□□□□ 0.44
LDLRP01130 COBL-210ENST00000632460 1941 ntTSL 5 BASIC17.8■□□□□ 0.44
LDLRP01130 MXRA8-209ENST00000477278 2728 ntTSL 5 BASIC17.8■□□□□ 0.44
LDLRP01130 DMD-208ENST00000378680 1858 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
LDLRP01130 TTC22-201ENST00000371274 2149 ntTSL 2 BASIC17.8■□□□□ 0.44
LDLRP01130 HMGXB3-206ENST00000613459 5567 ntAPPRIS ALT2 TSL 5 BASIC17.8■□□□□ 0.44
LDLRP01130 NDUFB9-206ENST00000522532 1319 ntTSL 2 BASIC17.8■□□□□ 0.44
LDLRP01130 HSPA4-205ENST00000617074 2358 ntTSL 5 BASIC17.8■□□□□ 0.44
LDLRP01130 WIPI2-201ENST00000288828 4476 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
LDLRP01130 BAZ1A-203ENST00000382422 5775 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
LDLRP01130 UBQLN4-201ENST00000368309 3576 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
LDLRP01130 HBA1-201ENST00000320868 577 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
LDLRP01130 ID1-202ENST00000376112 994 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
LDLRP01130 HES2-203ENST00000377837 1222 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
LDLRP01130 VSIG2-202ENST00000403470 1191 ntTSL 2 BASIC17.8■□□□□ 0.44
LDLRP01130 LINC01122-201ENST00000422723 675 ntTSL 3 BASIC17.8■□□□□ 0.44
LDLRP01130 TAPBP-236ENST00000456592 817 ntTSL 5 BASIC17.8■□□□□ 0.44
LDLRP01130 NEURL1B-202ENST00000520919 1089 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
LDLRP01130 CALM3-208ENST00000596362 1203 ntAPPRIS P1 TSL 2 BASIC17.8■□□□□ 0.44
LDLRP01130 CLN6-221ENST00000637494 765 ntTSL 5 BASIC17.8■□□□□ 0.44
LDLRP01130 DNAL4-201ENST00000216068 1504 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
LDLRP01130 STARD7-AS1-202ENST00000446816 1527 ntTSL 2 BASIC17.8■□□□□ 0.44
LDLRP01130 SLC39A5-201ENST00000266980 2031 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
LDLRP01130 TRAPPC12-201ENST00000324266 2508 ntAPPRIS P2 TSL 1 (best) BASIC17.8■□□□□ 0.44
LDLRP01130 ADPGK-AS1-201ENST00000563592 2730 ntTSL 2 BASIC17.8■□□□□ 0.44
LDLRP01130 CROCC2-201ENST00000443866 5382 ntAPPRIS P1 TSL 5 BASIC17.8■□□□□ 0.44
LDLRP01130 MYC-205ENST00000524013 2150 ntAPPRIS ALT1 TSL 1 (best) BASIC17.8■□□□□ 0.44
LDLRP01130 SIKE1-201ENST00000060969 2190 ntAPPRIS P3 TSL 1 (best) BASIC17.8■□□□□ 0.44
LDLRP01130 ADAM15-207ENST00000368413 1901 ntTSL 5 BASIC17.8■□□□□ 0.44
LDLRP01130 ACD-203ENST00000602320 1408 ntAPPRIS ALT2 TSL 5 BASIC17.8■□□□□ 0.44
LDLRP01130 KCNQ2-218ENST00000629676 2399 ntTSL 5 BASIC17.8■□□□□ 0.44
LDLRP01130 ALDH4A1-201ENST00000290597 2124 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
LDLRP01130 ZCWPW1-201ENST00000360951 2110 ntAPPRIS ALT2 TSL 2 BASIC17.8■□□□□ 0.44
LDLRP01130 KLHL14-201ENST00000358095 1884 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
LDLRP01130 EDA-208ENST00000524573 1381 ntAPPRIS ALT1 TSL 1 (best) BASIC17.79■□□□□ 0.44
LDLRP01130 AC124283.5-201ENST00000624661 1809 ntBASIC17.79■□□□□ 0.44
LDLRP01130 KCNC2-203ENST00000393288 2485 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
LDLRP01130 GSDMD-206ENST00000526406 2496 ntAPPRIS P2 TSL 2 BASIC17.79■□□□□ 0.44
LDLRP01130 HARBI1-201ENST00000326737 1967 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
LDLRP01130 FADS2-209ENST00000521849 1703 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
LDLRP01130 SRSF2-202ENST00000359995 1927 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
LDLRP01130 UNG-202ENST00000336865 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
LDLRP01130 ST8SIA1-202ENST00000381424 1036 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
LDLRP01130 AFG3L1P-203ENST00000418696 2965 ntTSL 2 BASIC17.79■□□□□ 0.44
LDLRP01130 LIN28AP1-201ENST00000429574 405 ntBASIC17.79■□□□□ 0.44
LDLRP01130 AC103855.2-201ENST00000533315 573 ntTSL 4 BASIC17.79■□□□□ 0.44
LDLRP01130 C12orf76-204ENST00000547573 607 ntTSL 3 BASIC17.79■□□□□ 0.44
LDLRP01130 AC009093.4-201ENST00000567984 561 ntTSL 4 BASIC17.79■□□□□ 0.44
LDLRP01130 AC091076.1-201ENST00000610741 619 ntBASIC17.79■□□□□ 0.44
LDLRP01130 DENND6B-201ENST00000413817 4939 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
LDLRP01130 TBXA2R-204ENST00000589966 1814 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
LDLRP01130 HOXC11-201ENST00000243082 2039 ntTSL 3 BASIC17.79■□□□□ 0.44
LDLRP01130 CCT7-215ENST00000539919 2031 ntTSL 2 BASIC17.79■□□□□ 0.44
LDLRP01130 PARD3-205ENST00000374773 3420 ntTSL 5 BASIC17.79■□□□□ 0.44
LDLRP01130 SAMD11-210ENST00000616016 2391 ntTSL 5 BASIC17.79■□□□□ 0.44
LDLRP01130 KLHL33-202ENST00000636854 2394 ntAPPRIS P1 TSL 5 BASIC17.79■□□□□ 0.44
LDLRP01130 MTSS1-203ENST00000431961 1711 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
LDLRP01130 ENTPD6-209ENST00000433259 2654 ntTSL 5 BASIC17.78■□□□□ 0.44
LDLRP01130 SALRNA1-201ENST00000555871 2086 ntTSL 4 BASIC17.78■□□□□ 0.44
LDLRP01130 AC008764.6-201ENST00000595909 2069 ntBASIC17.78■□□□□ 0.44
LDLRP01130 MAPRE3-201ENST00000233121 1892 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
LDLRP01130 GOSR2-210ENST00000576910 1891 ntAPPRIS ALT1 TSL 5 BASIC17.78■□□□□ 0.44
LDLRP01130 ZCCHC17-205ENST00000615916 1652 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
LDLRP01130 PLCH2-203ENST00000378486 4837 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
LDLRP01130 PLCH2-204ENST00000419816 4837 ntAPPRIS P1 TSL 5 BASIC17.78■□□□□ 0.44
LDLRP01130 UBR3-203ENST00000418381 7951 ntAPPRIS P1 TSL 5 BASIC17.78■□□□□ 0.44
LDLRP01130 IL17RC-215ENST00000455057 2244 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
LDLRP01130 STK25-201ENST00000316586 4619 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
LDLRP01130 TMC6-202ENST00000322914 2786 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
LDLRP01130 PROSER2-201ENST00000277570 3333 ntAPPRIS P2 TSL 1 (best) BASIC17.78■□□□□ 0.44
LDLRP01130 CACNA1B-205ENST00000371363 9758 ntAPPRIS ALT2 TSL 5 BASIC17.78■□□□□ 0.44
LDLRP01130 ACY1-201ENST00000404366 1473 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
LDLRP01130 TRIM50-201ENST00000333149 2047 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
LDLRP01130 ZNF211-203ENST00000299871 2577 ntAPPRIS ALT2 TSL 3 BASIC17.78■□□□□ 0.44
LDLRP01130 ZNF584-202ENST00000322834 1042 ntTSL 2 BASIC17.78■□□□□ 0.44
LDLRP01130 TYMSOS-201ENST00000323813 844 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
LDLRP01130 TMEM53-201ENST00000372235 890 ntTSL 2 BASIC17.78■□□□□ 0.44
LDLRP01130 FAM182B-202ENST00000376404 456 ntAPPRIS ALT2 BASIC17.78■□□□□ 0.44
LDLRP01130 AC110769.1-201ENST00000420161 815 ntTSL 3 BASIC17.78■□□□□ 0.44
LDLRP01130 GPHA2-202ENST00000532246 466 ntTSL 3 BASIC17.78■□□□□ 0.44
LDLRP01130 AC004803.1-203ENST00000539259 501 ntTSL 2 BASIC17.78■□□□□ 0.44
LDLRP01130 AL031600.3-201ENST00000566287 1124 ntTSL 5 BASIC17.78■□□□□ 0.44
LDLRP01130 PRR29-205ENST00000579184 1052 ntAPPRIS ALT2 TSL 2 BASIC17.78■□□□□ 0.44
LDLRP01130 SMAD7-207ENST00000589634 1278 ntAPPRIS ALT1 TSL 4 BASIC17.78■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 80.5 ms