Protein–RNA interactions for Protein: O95197

RTN3, Reticulon-3, humanhuman

Predicted RBP Predictions only

Length 1,032 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3O95197 EDC3-214ENST00000568176 1825 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
RTN3O95197 NDUFA1-201ENST00000371437 766 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
RTN3O95197 NT5C2-211ENST00000470299 249 ntTSL 5 BASIC19.4■□□□□ 0.7
RTN3O95197 LINC02106-201ENST00000506534 606 ntTSL 2 BASIC19.4■□□□□ 0.7
RTN3O95197 AC016582.2-201ENST00000591908 446 ntTSL 3 BASIC19.4■□□□□ 0.7
RTN3O95197 USF2-205ENST00000594064 1179 ntTSL 2 BASIC19.4■□□□□ 0.7
RTN3O95197 STX11-201ENST00000367568 1926 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
RTN3O95197 LGI2-201ENST00000382114 6428 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
RTN3O95197 FZD10-202ENST00000539839 3282 ntBASIC19.4■□□□□ 0.7
RTN3O95197 PCGF6-201ENST00000337211 1950 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
RTN3O95197 SNAI3-AS1-205ENST00000568633 2096 ntBASIC19.4■□□□□ 0.7
RTN3O95197 SLC5A10-204ENST00000395647 2140 ntTSL 2 BASIC19.4■□□□□ 0.7
RTN3O95197 TTC3-203ENST00000399010 2115 ntTSL 5 BASIC19.4■□□□□ 0.7
RTN3O95197 PLEKHA2-206ENST00000521746 2127 ntTSL 5 BASIC19.4■□□□□ 0.7
RTN3O95197 AC112777.1-201ENST00000540175 1423 ntBASIC19.4■□□□□ 0.7
RTN3O95197 MSANTD1-201ENST00000438480 2922 ntAPPRIS P3 TSL 5 BASIC19.4■□□□□ 0.7
RTN3O95197 MAP2K5-202ENST00000340972 1491 ntTSL 2 BASIC19.4■□□□□ 0.7
RTN3O95197 MEPCE-202ENST00000414441 2261 ntTSL 2 BASIC19.4■□□□□ 0.7
RTN3O95197 TUBA3C-201ENST00000400113 1551 ntAPPRIS P1 TSL 5 BASIC19.4■□□□□ 0.7
RTN3O95197 ACOT4-201ENST00000326303 2362 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
RTN3O95197 AP003071.5-201ENST00000641568 2695 ntAPPRIS P1 BASIC19.39■□□□□ 0.7
RTN3O95197 LINC01356-201ENST00000401018 1819 ntTSL 2 BASIC19.39■□□□□ 0.7
RTN3O95197 CACNA1A-246ENST00000637736 8340 ntAPPRIS ALT2 TSL 5 BASIC19.39■□□□□ 0.7
RTN3O95197 TMEM88-201ENST00000301599 875 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
RTN3O95197 MIR662-201ENST00000384847 95 ntBASIC19.39■□□□□ 0.69
RTN3O95197 DMKN-212ENST00000443640 842 ntAPPRIS ALT2 TSL 5 BASIC19.39■□□□□ 0.69
RTN3O95197 AC116353.4-201ENST00000507279 576 ntTSL 4 BASIC19.39■□□□□ 0.69
RTN3O95197 AC022424.1-201ENST00000512155 889 ntTSL 3 BASIC19.39■□□□□ 0.69
RTN3O95197 SELENOS-203ENST00000526049 1188 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
RTN3O95197 RAP1B-229ENST00000543393 874 ntTSL 3 BASIC19.39■□□□□ 0.69
RTN3O95197 KRTCAP3-207ENST00000543753 956 ntAPPRIS P1 TSL 5 BASIC19.39■□□□□ 0.69
RTN3O95197 GSTZ1-218ENST00000557053 580 ntTSL 3 BASIC19.39■□□□□ 0.69
RTN3O95197 LAT-204ENST00000395461 1448 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
RTN3O95197 PBK-203ENST00000522944 1499 ntTSL 2 BASIC19.39■□□□□ 0.69
RTN3O95197 AGER-205ENST00000375069 1538 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
RTN3O95197 THNSL2-205ENST00000449349 1616 ntTSL 5 BASIC19.39■□□□□ 0.69
RTN3O95197 AC129492.1-201ENST00000399413 1804 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
RTN3O95197 PITX2-203ENST00000355080 2100 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
RTN3O95197 SEMA6D-205ENST00000389425 2318 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
RTN3O95197 MYO15B-232ENST00000610510 9195 ntAPPRIS P1 TSL 5 BASIC19.38■□□□□ 0.69
RTN3O95197 KCNC3-203ENST00000477616 3176 ntAPPRIS P2 TSL 1 (best) BASIC19.38■□□□□ 0.69
RTN3O95197 ADAMTS19-201ENST00000274487 5234 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
RTN3O95197 TCTA-201ENST00000273590 2146 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
RTN3O95197 ANKRD40-201ENST00000285243 4184 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
RTN3O95197 RPA2-201ENST00000313433 1237 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
RTN3O95197 CAMKK1-202ENST00000348335 3563 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
RTN3O95197 ZNF655-203ENST00000357864 1370 ntTSL 2 BASIC19.38■□□□□ 0.69
RTN3O95197 AC115618.1-201ENST00000376775 549 ntTSL 3 BASIC19.38■□□□□ 0.69
RTN3O95197 ACSF3-202ENST00000378345 1541 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
RTN3O95197 FKRP-202ENST00000391909 2801 ntAPPRIS P1 TSL 2 BASIC19.38■□□□□ 0.69
RTN3O95197 ARSA-203ENST00000395619 1824 ntAPPRIS P1 TSL 5 BASIC19.38■□□□□ 0.69
RTN3O95197 CBR1-203ENST00000439427 1024 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
RTN3O95197 MYD88-211ENST00000495303 976 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
RTN3O95197 AC008393.1-201ENST00000499601 1454 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
RTN3O95197 AL163051.1-201ENST00000569214 1512 ntBASIC19.38■□□□□ 0.69
RTN3O95197 LINC00092-202ENST00000580908 580 ntTSL 2 BASIC19.38■□□□□ 0.69
RTN3O95197 WDR18-202ENST00000585809 1608 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
RTN3O95197 NDUFV2-AS1-203ENST00000608008 779 ntBASIC19.38■□□□□ 0.69
RTN3O95197 AC069148.1-201ENST00000608741 768 ntBASIC19.38■□□□□ 0.69
RTN3O95197 SAMD11-211ENST00000616125 2230 ntAPPRIS ALT2 TSL 5 BASIC19.38■□□□□ 0.69
RTN3O95197 COBL-210ENST00000632460 1941 ntTSL 5 BASIC19.38■□□□□ 0.69
RTN3O95197 ZFP92-201ENST00000338647 6105 ntAPPRIS P1 TSL 5 BASIC19.38■□□□□ 0.69
RTN3O95197 ANHX-202ENST00000545940 3452 ntAPPRIS P1 TSL 5 BASIC19.38■□□□□ 0.69
RTN3O95197 PHKA1-204ENST00000373545 6173 ntTSL 5 BASIC19.38■□□□□ 0.69
RTN3O95197 SREBF2-209ENST00000612482 5365 ntTSL 5 BASIC19.38■□□□□ 0.69
RTN3O95197 USP21-201ENST00000289865 2195 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
RTN3O95197 AC114490.1-202ENST00000311990 1887 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
RTN3O95197 NR1D2-201ENST00000312521 5258 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
RTN3O95197 ZNF787-202ENST00000587279 1657 ntTSL 2 BASIC19.37■□□□□ 0.69
RTN3O95197 TRIM61-201ENST00000329314 1582 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
RTN3O95197 MCU-201ENST00000357157 2874 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
RTN3O95197 AL603832.1-201ENST00000421943 449 ntTSL 5 BASIC19.37■□□□□ 0.69
RTN3O95197 TMEM243-203ENST00000433078 1273 ntAPPRIS P1 TSL 2 BASIC19.37■□□□□ 0.69
RTN3O95197 TRIM73-203ENST00000437796 1169 ntAPPRIS P2 TSL 1 (best) BASIC19.37■□□□□ 0.69
RTN3O95197 KLHL21-204ENST00000467612 1056 ntTSL 3 BASIC19.37■□□□□ 0.69
RTN3O95197 CNP-204ENST00000472031 1019 ntTSL 2 BASIC19.37■□□□□ 0.69
RTN3O95197 PLXND1-205ENST00000504689 546 ntTSL 3 BASIC19.37■□□□□ 0.69
RTN3O95197 LY6E-209ENST00000521003 740 ntAPPRIS P2 TSL 2 BASIC19.37■□□□□ 0.69
RTN3O95197 RAB6A-207ENST00000541588 758 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
RTN3O95197 REEP1-209ENST00000541910 969 ntTSL 2 BASIC19.37■□□□□ 0.69
RTN3O95197 ANKRD34C-AS1-201ENST00000557790 594 ntTSL 3 BASIC19.37■□□□□ 0.69
RTN3O95197 NAA38-203ENST00000575071 553 ntTSL 2 BASIC19.37■□□□□ 0.69
RTN3O95197 CABIN1-202ENST00000337989 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
RTN3O95197 BANP-223ENST00000538234 2372 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
RTN3O95197 ZNF419-201ENST00000221735 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
RTN3O95197 FAM109B-201ENST00000321753 2335 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
RTN3O95197 SLC35G2-202ENST00000446465 2060 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
RTN3O95197 ELMOD1-202ENST00000443271 1990 ntAPPRIS P1 TSL 2 BASIC19.37■□□□□ 0.69
RTN3O95197 SEMA6C-210ENST00000621728 1918 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
RTN3O95197 GDPD1-201ENST00000284116 1821 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
RTN3O95197 SLC1A6-210ENST00000600144 1735 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
RTN3O95197 NAF1-202ENST00000422287 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
RTN3O95197 PRODH-215ENST00000610940 2405 ntAPPRIS P3 TSL 1 (best) BASIC19.36■□□□□ 0.69
RTN3O95197 AL162741.1-201ENST00000565563 1558 ntBASIC19.36■□□□□ 0.69
RTN3O95197 AGPAT2-205ENST00000538402 1357 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
RTN3O95197 GLYCTK-202ENST00000436784 1982 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
RTN3O95197 ULK3-220ENST00000569437 2611 ntAPPRIS ALT1 TSL 1 (best) BASIC19.36■□□□□ 0.69
RTN3O95197 PARK7-201ENST00000338639 949 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
RTN3O95197 SCO2-202ENST00000395693 992 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
RTN3O95197 FARSA-202ENST00000423140 1720 ntTSL 2 BASIC19.36■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 21.7 ms