Protein–RNA interactions for Protein: O75351

VPS4B, Vacuolar protein sorting-associated protein 4B, humanhuman

Predictions only

Length 444 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4BO75351 SAMD11-215ENST00000618779 2368 ntAPPRIS ALT2 TSL 5 BASIC18.08■□□□□ 0.48
VPS4BO75351 CNTNAP3-204ENST00000377656 4986 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
VPS4BO75351 TCP11-209ENST00000444780 1841 ntAPPRIS ALT2 TSL 2 BASIC18.08■□□□□ 0.48
VPS4BO75351 IL17C-201ENST00000244241 1044 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
VPS4BO75351 FAM86B2-202ENST00000309608 806 ntTSL 3 BASIC18.08■□□□□ 0.48
VPS4BO75351 COX5A-201ENST00000322347 1268 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
VPS4BO75351 ID1-202ENST00000376112 994 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
VPS4BO75351 MIEN1-201ENST00000394231 1006 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
VPS4BO75351 LINC01238-205ENST00000567549 1107 ntBASIC18.08■□□□□ 0.48
VPS4BO75351 TGIF1-222ENST00000577543 729 ntTSL 3 BASIC18.08■□□□□ 0.48
VPS4BO75351 CALM3-208ENST00000596362 1203 ntAPPRIS P1 TSL 2 BASIC18.08■□□□□ 0.48
VPS4BO75351 CR392000.1-201ENST00000624770 1228 ntBASIC18.08■□□□□ 0.48
VPS4BO75351 FBXL22-204ENST00000638704 729 ntAPPRIS ALT2 TSL 2 BASIC18.08■□□□□ 0.48
VPS4BO75351 DNAJA3-203ENST00000431375 2294 ntTSL 2 BASIC18.08■□□□□ 0.48
VPS4BO75351 KBTBD11-201ENST00000320248 6710 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
VPS4BO75351 UBE3A-201ENST00000232165 5051 ntAPPRIS P3 TSL 5 BASIC18.08■□□□□ 0.48
VPS4BO75351 ZNF394-201ENST00000337673 2179 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
VPS4BO75351 ZNF419-204ENST00000415379 2186 ntAPPRIS ALT2 TSL 2 BASIC18.08■□□□□ 0.48
VPS4BO75351 SCOC-208ENST00000510586 2193 ntAPPRIS ALT1 TSL 5 BASIC18.08■□□□□ 0.48
VPS4BO75351 STARD3-201ENST00000336308 2132 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
VPS4BO75351 NIPAL2-202ENST00000430223 4496 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
VPS4BO75351 WIPF1-206ENST00000409891 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.48
VPS4BO75351 NOV-201ENST00000259526 2522 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
VPS4BO75351 SKIDA1-202ENST00000449193 6598 ntAPPRIS P2 TSL 3 BASIC18.08■□□□□ 0.48
VPS4BO75351 PLK3-201ENST00000372201 2492 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
VPS4BO75351 AL034417.2-201ENST00000445300 2044 ntTSL 2 BASIC18.08■□□□□ 0.48
VPS4BO75351 MRPS2-201ENST00000241600 1510 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
VPS4BO75351 KRT81-202ENST00000615839 1505 ntAPPRIS ALT2 TSL 5 BASIC18.08■□□□□ 0.48
VPS4BO75351 PCDHB18P-201ENST00000524813 2368 ntBASIC18.08■□□□□ 0.48
VPS4BO75351 GPR83-202ENST00000539203 1909 ntTSL 5 BASIC18.08■□□□□ 0.48
VPS4BO75351 KRT8P45-201ENST00000414328 1447 ntBASIC18.07■□□□□ 0.48
VPS4BO75351 HOXB8-201ENST00000239144 1823 ntAPPRIS P2 TSL 2 BASIC18.07■□□□□ 0.48
VPS4BO75351 AC118553.2-203ENST00000639037 2590 ntAPPRIS P5 TSL 5 BASIC18.07■□□□□ 0.48
VPS4BO75351 AC068446.2-201ENST00000500487 2165 ntTSL 2 BASIC18.07■□□□□ 0.48
VPS4BO75351 SOGA3-203ENST00000525778 4077 ntAPPRIS P1 TSL 5 BASIC18.07■□□□□ 0.48
VPS4BO75351 CYP2D7-203ENST00000433992 1740 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
VPS4BO75351 ZNF114-206ENST00000600687 1742 ntAPPRIS P1 TSL 5 BASIC18.07■□□□□ 0.48
VPS4BO75351 CYP2D7-207ENST00000612115 1734 ntAPPRIS P1 TSL 5 BASIC18.07■□□□□ 0.48
VPS4BO75351 KHDC1-201ENST00000257765 1134 ntAPPRIS P3 TSL 1 (best) BASIC18.07■□□□□ 0.48
VPS4BO75351 BOLA3-202ENST00000327428 639 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
VPS4BO75351 C7orf50-201ENST00000357429 1294 ntAPPRIS P2 TSL 1 (best) BASIC18.07■□□□□ 0.48
VPS4BO75351 ISOC2-202ENST00000425675 998 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
VPS4BO75351 AL513320.1-201ENST00000435049 622 ntTSL 3 BASIC18.07■□□□□ 0.48
VPS4BO75351 LINC00636-201ENST00000494231 1264 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
VPS4BO75351 AC006504.5-207ENST00000586220 487 ntTSL 2 BASIC18.07■□□□□ 0.48
VPS4BO75351 EEF2KMT-206ENST00000587133 873 ntAPPRIS ALT2 TSL 3 BASIC18.07■□□□□ 0.48
VPS4BO75351 KHDC1-207ENST00000610435 1101 ntAPPRIS P3 TSL 5 BASIC18.07■□□□□ 0.48
VPS4BO75351 AL445675.2-201ENST00000620291 557 ntBASIC18.07■□□□□ 0.48
VPS4BO75351 AC131212.4-201ENST00000623606 975 ntBASIC18.07■□□□□ 0.48
VPS4BO75351 AC097662.2-201ENST00000641359 267 ntAPPRIS P1 BASIC18.07■□□□□ 0.48
VPS4BO75351 FIBIN-201ENST00000318627 1938 ntAPPRIS P1 BASIC18.07■□□□□ 0.48
VPS4BO75351 DIO3OS-212ENST00000557661 1937 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
VPS4BO75351 DNAL4-201ENST00000216068 1504 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
VPS4BO75351 PHB2-203ENST00000535923 1515 ntAPPRIS P2 TSL 5 BASIC18.07■□□□□ 0.48
VPS4BO75351 TBXA2R-204ENST00000589966 1814 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
VPS4BO75351 AGAP2-201ENST00000257897 5388 ntAPPRIS P3 TSL 1 (best) BASIC18.07■□□□□ 0.48
VPS4BO75351 MYC-207ENST00000621592 2366 ntAPPRIS ALT1 TSL 1 (best) BASIC18.06■□□□□ 0.48
VPS4BO75351 TRPV4-208ENST00000544971 2295 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
VPS4BO75351 KRTCAP3-201ENST00000288873 872 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
VPS4BO75351 AL731557.1-201ENST00000425264 744 ntTSL 3 BASIC18.06■□□□□ 0.48
VPS4BO75351 FAM86C1-203ENST00000426628 952 ntAPPRIS ALT2 TSL 2 BASIC18.06■□□□□ 0.48
VPS4BO75351 UPK3BP1-201ENST00000428678 509 ntBASIC18.06■□□□□ 0.48
VPS4BO75351 OOEP-AS1-201ENST00000445350 463 ntTSL 3 BASIC18.06■□□□□ 0.48
VPS4BO75351 TNFSF13-208ENST00000483039 959 ntTSL 2 BASIC18.06■□□□□ 0.48
VPS4BO75351 KDM2B-217ENST00000543852 1188 ntTSL 5 BASIC18.06■□□□□ 0.48
VPS4BO75351 AC100839.1-201ENST00000559589 577 ntTSL 4 BASIC18.06■□□□□ 0.48
VPS4BO75351 CDIPT-204ENST00000563415 1047 ntTSL 3 BASIC18.06■□□□□ 0.48
VPS4BO75351 USF2-205ENST00000594064 1179 ntTSL 2 BASIC18.06■□□□□ 0.48
VPS4BO75351 AC091076.1-201ENST00000610741 619 ntBASIC18.06■□□□□ 0.48
VPS4BO75351 ENTPD6-209ENST00000433259 2654 ntTSL 5 BASIC18.06■□□□□ 0.48
VPS4BO75351 PPP1R7-201ENST00000234038 2386 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
VPS4BO75351 DNLZ-202ENST00000371739 2934 ntTSL 5 BASIC18.06■□□□□ 0.48
VPS4BO75351 CCDC43-201ENST00000315286 2082 ntAPPRIS P2 TSL 1 (best) BASIC18.06■□□□□ 0.48
VPS4BO75351 HCK-202ENST00000375852 2082 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
VPS4BO75351 MMP9-201ENST00000372330 2336 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
VPS4BO75351 C2CD2L-205ENST00000528586 2320 ntTSL 2 BASIC18.06■□□□□ 0.48
VPS4BO75351 PCBP4-210ENST00000471622 1784 ntTSL 5 BASIC18.06■□□□□ 0.48
VPS4BO75351 DAG1-222ENST00000545947 5829 ntAPPRIS P1 TSL 5 BASIC18.06■□□□□ 0.48
VPS4BO75351 AMDHD2-201ENST00000293971 1459 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
VPS4BO75351 MECP2-205ENST00000453960 1729 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
VPS4BO75351 RHOU-201ENST00000366691 4372 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
VPS4BO75351 RAB4A-205ENST00000618010 2799 ntTSL 3 BASIC18.06■□□□□ 0.48
VPS4BO75351 RBCK1-203ENST00000382181 2208 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
VPS4BO75351 NPNT-203ENST00000427316 2481 ntAPPRIS ALT2 TSL 2 BASIC18.06■□□□□ 0.48
VPS4BO75351 TWIST2-202ENST00000612363 1404 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
VPS4BO75351 FAM131A-204ENST00000418281 1664 ntTSL 5 BASIC18.06■□□□□ 0.48
VPS4BO75351 AL499627.1-201ENST00000569373 2188 ntBASIC18.06■□□□□ 0.48
VPS4BO75351 PTTG1IP-203ENST00000397887 2413 ntTSL 4 BASIC18.06■□□□□ 0.48
VPS4BO75351 SYBU-201ENST00000276646 2870 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
VPS4BO75351 MB21D2-201ENST00000392452 3368 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
VPS4BO75351 MZF1-206ENST00000599369 2587 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
VPS4BO75351 TMPRSS9-205ENST00000613480 2568 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
VPS4BO75351 DCAKD-208ENST00000614054 2054 ntAPPRIS P1 TSL 2 BASIC18.05■□□□□ 0.48
VPS4BO75351 STOML1-209ENST00000564777 1849 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
VPS4BO75351 ACAA1-209ENST00000450296 1570 ntTSL 5 BASIC18.05■□□□□ 0.48
VPS4BO75351 C18orf21-205ENST00000592875 1581 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
VPS4BO75351 SPART-209ENST00000494062 3018 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
VPS4BO75351 CDK10-202ENST00000353379 1798 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
VPS4BO75351 UCHL5-202ENST00000367449 1507 ntAPPRIS ALT1 TSL 1 (best) BASIC18.05■□□□□ 0.48
VPS4BO75351 TMEM88B-201ENST00000378821 492 ntAPPRIS P1 TSL 2 BASIC18.05■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 25.4 ms