Protein–RNA interactions for Protein: O75056

SDC3, Syndecan-3, humanhuman

Predictions only

Length 442 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3O75056 UPF1-201ENST00000262803 5348 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
SDC3O75056 ALG9-214ENST00000614444 2028 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
SDC3O75056 DISC1-215ENST00000602281 2761 ntAPPRIS ALT2 TSL 1 (best) BASIC17.99■□□□□ 0.47
SDC3O75056 ECE1-205ENST00000436918 2328 ntTSL 2 BASIC17.99■□□□□ 0.47
SDC3O75056 LYPD3-201ENST00000244333 1694 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
SDC3O75056 RAX-202ENST00000334889 3197 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
SDC3O75056 MAFG-201ENST00000357736 5040 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
SDC3O75056 RIMKLB-202ENST00000357529 5830 ntAPPRIS P1 TSL 5 BASIC17.98■□□□□ 0.47
SDC3O75056 SEMA6C-210ENST00000621728 1918 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
SDC3O75056 SIDT2-217ENST00000532062 2143 ntTSL 2 BASIC17.98■□□□□ 0.47
SDC3O75056 ZNF346-201ENST00000358149 2314 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
SDC3O75056 NPFFR2-202ENST00000344413 1234 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
SDC3O75056 CD1E-203ENST00000368156 861 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
SDC3O75056 CDKN1C-201ENST00000380725 1220 ntAPPRIS ALT2 TSL 2 BASIC17.98■□□□□ 0.47
SDC3O75056 DYNLL1-203ENST00000392509 814 ntAPPRIS P1 TSL 3 BASIC17.98■□□□□ 0.47
SDC3O75056 CYCS-202ENST00000409409 974 ntAPPRIS P1 TSL 3 BASIC17.98■□□□□ 0.47
SDC3O75056 AL133343.2-201ENST00000457213 370 ntTSL 3 BASIC17.98■□□□□ 0.47
SDC3O75056 AC080013.1-203ENST00000468242 720 ntTSL 5 BASIC17.98■□□□□ 0.47
SDC3O75056 BET1L-206ENST00000486280 665 ntTSL 3 BASIC17.98■□□□□ 0.47
SDC3O75056 AC080013.1-201ENST00000495318 566 ntTSL 4 BASIC17.98■□□□□ 0.47
SDC3O75056 AC099805.1-202ENST00000519927 1057 ntTSL 5 BASIC17.98■□□□□ 0.47
SDC3O75056 AP002469.2-201ENST00000531724 424 ntBASIC17.98■□□□□ 0.47
SDC3O75056 TYROBP-205ENST00000585901 620 ntTSL 3 BASIC17.98■□□□□ 0.47
SDC3O75056 AC011511.2-201ENST00000592893 918 ntTSL 3 BASIC17.98■□□□□ 0.47
SDC3O75056 HSP90B1-211ENST00000640977 1127 ntTSL 5 BASIC17.98■□□□□ 0.47
SDC3O75056 UBE2E1-202ENST00000346855 1398 ntTSL 3 BASIC17.98■□□□□ 0.47
SDC3O75056 TICAM1-202ENST00000621756 1650 ntTSL 5 BASIC17.98■□□□□ 0.47
SDC3O75056 MLF2-201ENST00000203630 1969 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
SDC3O75056 TMEM191A-208ENST00000450925 1961 ntTSL 2 BASIC17.98■□□□□ 0.47
SDC3O75056 ACD-201ENST00000219251 2052 ntAPPRIS P3 TSL 2 BASIC17.98■□□□□ 0.47
SDC3O75056 RELB-201ENST00000221452 2294 ntAPPRIS P2 TSL 1 (best) BASIC17.98■□□□□ 0.47
SDC3O75056 AL049812.1-201ENST00000432563 2267 ntBASIC17.98■□□□□ 0.47
SDC3O75056 KCTD12-201ENST00000377474 6225 ntAPPRIS P1 BASIC17.98■□□□□ 0.47
SDC3O75056 MEN1-202ENST00000315422 3148 ntAPPRIS ALT1 TSL 5 BASIC17.98■□□□□ 0.47
SDC3O75056 TMEM214-203ENST00000404032 2830 ntTSL 2 BASIC17.98■□□□□ 0.47
SDC3O75056 DNAJC28-204ENST00000617313 2237 ntAPPRIS P1 TSL 5 BASIC17.98■□□□□ 0.47
SDC3O75056 ACBD4-204ENST00000431281 2026 ntTSL 5 BASIC17.98■□□□□ 0.47
SDC3O75056 CYP21A2-222ENST00000435122 1914 ntTSL 2 BASIC17.98■□□□□ 0.47
SDC3O75056 ASCC1-205ENST00000394919 2683 ntAPPRIS P1 TSL 2 BASIC17.97■□□□□ 0.47
SDC3O75056 ESR2-212ENST00000556275 2695 ntTSL 2 BASIC17.97■□□□□ 0.47
SDC3O75056 TMEM235-202ENST00000421688 2490 ntAPPRIS P1 TSL 5 BASIC17.97■□□□□ 0.47
SDC3O75056 PTGER2-201ENST00000245457 2383 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
SDC3O75056 NR1H2-201ENST00000253727 1998 ntAPPRIS P2 TSL 1 (best) BASIC17.97■□□□□ 0.47
SDC3O75056 ABCC6-209ENST00000640696 1893 ntTSL 5 BASIC17.97■□□□□ 0.47
SDC3O75056 SLC2A14-214ENST00000542505 1650 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
SDC3O75056 NAB2-201ENST00000300131 2711 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
SDC3O75056 ACD-215ENST00000620761 1483 ntAPPRIS ALT2 TSL 1 (best) BASIC17.97■□□□□ 0.47
SDC3O75056 CDK2AP2-201ENST00000301488 1378 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
SDC3O75056 CRLF3-201ENST00000324238 2957 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
SDC3O75056 HDDC3-201ENST00000330334 1047 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
SDC3O75056 LCE1F-201ENST00000334371 357 ntAPPRIS P1 BASIC17.97■□□□□ 0.47
SDC3O75056 EXOSC3-202ENST00000396521 768 ntTSL 2 BASIC17.97■□□□□ 0.47
SDC3O75056 ROMO1-205ENST00000397416 288 ntAPPRIS P1 TSL 3 BASIC17.97■□□□□ 0.47
SDC3O75056 C7orf34-201ENST00000409607 766 ntAPPRIS P2 TSL 1 (best) BASIC17.97■□□□□ 0.47
SDC3O75056 MRPL28-203ENST00000429738 310 ntTSL 2 BASIC17.97■□□□□ 0.47
SDC3O75056 MINOS1P3-201ENST00000457048 203 ntBASIC17.97■□□□□ 0.47
SDC3O75056 BARHL1-202ENST00000542090 1197 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
SDC3O75056 ABR-204ENST00000543210 1049 ntTSL 2 BASIC17.97■□□□□ 0.47
SDC3O75056 SAXO2-206ENST00000566205 340 ntAPPRIS ALT2 TSL 2 BASIC17.97■□□□□ 0.47
SDC3O75056 ABR-217ENST00000572441 563 ntTSL 4 BASIC17.97■□□□□ 0.47
SDC3O75056 AC104971.2-201ENST00000588144 1209 ntTSL 2 BASIC17.97■□□□□ 0.47
SDC3O75056 SMIM22-203ENST00000588500 525 ntAPPRIS ALT2 TSL 1 (best) BASIC17.97■□□□□ 0.47
SDC3O75056 FLT3LG-206ENST00000597551 951 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
SDC3O75056 AC004263.2-201ENST00000617183 678 ntBASIC17.97■□□□□ 0.47
SDC3O75056 LINC01714-202ENST00000635451 896 ntTSL 5 BASIC17.97■□□□□ 0.47
SDC3O75056 OCSTAMP-201ENST00000279028 2043 ntAPPRIS P1 TSL 5 BASIC17.97■□□□□ 0.47
SDC3O75056 FAM57A-201ENST00000301324 2013 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
SDC3O75056 RUVBL2-206ENST00000595090 2009 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
SDC3O75056 AR-209ENST00000613054 3532 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
SDC3O75056 KLF13-201ENST00000307145 6825 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
SDC3O75056 CPZ-202ENST00000360986 2267 ntAPPRIS ALT2 TSL 1 (best) BASIC17.97■□□□□ 0.47
SDC3O75056 THAP3-203ENST00000377627 2053 ntAPPRIS P3 TSL 2 BASIC17.97■□□□□ 0.47
SDC3O75056 CLIP2-201ENST00000223398 5563 ntAPPRIS P1 TSL 5 BASIC17.97■□□□□ 0.47
SDC3O75056 C18orf25-204ENST00000615553 2329 ntTSL 5 BASIC17.97■□□□□ 0.47
SDC3O75056 BRAF-201ENST00000288602 2480 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
SDC3O75056 FDFT1-226ENST00000623368 2368 ntTSL 2 BASIC17.96■□□□□ 0.47
SDC3O75056 RMND5B-201ENST00000313386 1929 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
SDC3O75056 AC011944.1-201ENST00000316148 1900 ntTSL 2 BASIC17.96■□□□□ 0.47
SDC3O75056 EIF2B4-210ENST00000493344 1949 ntTSL 5 BASIC17.96■□□□□ 0.47
SDC3O75056 ANKRD16-203ENST00000380094 2738 ntAPPRIS P1 TSL 2 BASIC17.96■□□□□ 0.47
SDC3O75056 HSD3B7-202ENST00000297679 2172 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
SDC3O75056 HBQ1-201ENST00000199708 536 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
SDC3O75056 MIR202HG-201ENST00000300167 384 ntTSL 2 BASIC17.96■□□□□ 0.47
SDC3O75056 AKR1C7P-201ENST00000305623 895 ntBASIC17.96■□□□□ 0.47
SDC3O75056 BOLA1-201ENST00000369150 811 ntAPPRIS P1 TSL 3 BASIC17.96■□□□□ 0.47
SDC3O75056 IGF2-202ENST00000381392 1005 ntAPPRIS ALT1 TSL 1 (best) BASIC17.96■□□□□ 0.47
SDC3O75056 AL022342.1-201ENST00000400363 863 ntBASIC17.96■□□□□ 0.47
SDC3O75056 AC092159.3-201ENST00000439196 571 ntTSL 4 BASIC17.96■□□□□ 0.47
SDC3O75056 AL137026.1-202ENST00000452578 1089 ntTSL 2 BASIC17.96■□□□□ 0.47
SDC3O75056 FICD-205ENST00000552758 603 ntTSL 2 BASIC17.96■□□□□ 0.47
SDC3O75056 SLC25A6P4-201ENST00000586535 553 ntBASIC17.96■□□□□ 0.47
SDC3O75056 AL121912.1-201ENST00000603683 238 ntBASIC17.96■□□□□ 0.47
SDC3O75056 CHMP4A-211ENST00000609024 735 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
SDC3O75056 NRXN1-208ENST00000405472 5724 ntAPPRIS ALT2 TSL 5 BASIC17.96■□□□□ 0.47
SDC3O75056 C15orf56-202ENST00000623360 2129 ntTSL 2 BASIC17.96■□□□□ 0.47
SDC3O75056 FAM46B-201ENST00000289166 2368 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
SDC3O75056 P2RX5-202ENST00000345901 2031 ntTSL 5 BASIC17.96■□□□□ 0.47
SDC3O75056 CELF6-204ENST00000543764 1676 ntTSL 2 BASIC17.96■□□□□ 0.47
SDC3O75056 TP53BP2-201ENST00000343537 4651 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
SDC3O75056 CCT5-205ENST00000506600 1939 ntTSL 2 BASIC17.96■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 24.1 ms