Protein–RNA interactions for Protein: O60260

PRKN, E3 ubiquitin-protein ligase parkin, humanhuman

Predicted RBP Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKNO60260 PIF1-205ENST00000559239 2677 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
PRKNO60260 TCAIM-203ENST00000396078 2178 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
PRKNO60260 SNAPC3-207ENST00000610884 2453 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
PRKNO60260 ADK-206ENST00000541550 2222 ntTSL 2 BASIC17.13■□□□□ 0.33
PRKNO60260 NOTCH2NL-204ENST00000579793 1954 ntAPPRIS ALT2 TSL 2 BASIC17.13■□□□□ 0.33
PRKNO60260 SNX4-201ENST00000251775 2513 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
PRKNO60260 ARHGAP28-203ENST00000383472 2295 ntAPPRIS ALT2 TSL 5 BASIC17.13■□□□□ 0.33
PRKNO60260 PLEKHB2-204ENST00000409158 2277 ntTSL 2 BASIC17.13■□□□□ 0.33
PRKNO60260 SIGLEC10-204ENST00000436984 1776 ntTSL 2 BASIC17.13■□□□□ 0.33
PRKNO60260 ZXDB-201ENST00000374888 5894 ntAPPRIS P1 BASIC17.13■□□□□ 0.33
PRKNO60260 CPT2-207ENST00000636867 2643 ntTSL 5 BASIC17.13■□□□□ 0.33
PRKNO60260 LINC00634-201ENST00000381348 1510 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
PRKNO60260 KCNH1-210ENST00000640044 1818 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
PRKNO60260 NOM1-201ENST00000275820 6077 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
PRKNO60260 TMEM190-201ENST00000291934 593 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
PRKNO60260 TYMSOS-201ENST00000323813 844 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
PRKNO60260 AC093620.1-201ENST00000342963 583 ntTSL 3 BASIC17.13■□□□□ 0.33
PRKNO60260 PTGDS-202ENST00000371625 807 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
PRKNO60260 AC005091.1-201ENST00000441955 1190 ntTSL 3 BASIC17.13■□□□□ 0.33
PRKNO60260 ST20-202ENST00000485386 529 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
PRKNO60260 LCN10-205ENST00000497771 723 ntAPPRIS P2 TSL 1 (best) BASIC17.13■□□□□ 0.33
PRKNO60260 HELT-202ENST00000505610 846 ntAPPRIS ALT1 TSL 1 (best) BASIC17.13■□□□□ 0.33
PRKNO60260 VENTXP5-201ENST00000523979 775 ntBASIC17.13■□□□□ 0.33
PRKNO60260 AP003396.3-201ENST00000530918 778 ntTSL 5 BASIC17.13■□□□□ 0.33
PRKNO60260 AL121956.5-201ENST00000625261 221 ntBASIC17.13■□□□□ 0.33
PRKNO60260 FBXL22-204ENST00000638704 729 ntAPPRIS ALT2 TSL 2 BASIC17.13■□□□□ 0.33
PRKNO60260 SRP9-203ENST00000366839 1596 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
PRKNO60260 SEC61A2-201ENST00000298428 1893 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
PRKNO60260 STXBP2-202ENST00000414284 1859 ntAPPRIS ALT1 TSL 1 (best) BASIC17.13■□□□□ 0.33
PRKNO60260 DBN1-201ENST00000292385 3072 ntAPPRIS P4 TSL 1 (best) BASIC17.13■□□□□ 0.33
PRKNO60260 NTMT1-211ENST00000617943 1346 ntTSL 3 BASIC17.13■□□□□ 0.33
PRKNO60260 STX11-201ENST00000367568 1926 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
PRKNO60260 GRAMD2B-219ENST00000544396 2822 ntTSL 2 BASIC17.13■□□□□ 0.33
PRKNO60260 CDAN1-201ENST00000356231 4637 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
PRKNO60260 RNF167-205ENST00000571816 1728 ntAPPRIS P3 TSL 5 BASIC17.13■□□□□ 0.33
PRKNO60260 FOXP1-214ENST00000493089 2703 ntAPPRIS ALT1 TSL 2 BASIC17.12■□□□□ 0.33
PRKNO60260 CBX1-202ENST00000393408 2422 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
PRKNO60260 SAMD11-216ENST00000620200 1874 ntTSL 5 BASIC17.12■□□□□ 0.33
PRKNO60260 PON1-201ENST00000222381 2568 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
PRKNO60260 KCNA3-201ENST00000369769 2569 ntAPPRIS P1 BASIC17.12■□□□□ 0.33
PRKNO60260 CADPS2-202ENST00000334010 6045 ntAPPRIS ALT2 TSL 5 BASIC17.12■□□□□ 0.33
PRKNO60260 MYEOV-201ENST00000308946 2287 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
PRKNO60260 AC020661.1-201ENST00000503052 1584 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
PRKNO60260 ZSWIM8-220ENST00000604524 5465 ntTSL 5 BASIC17.12■□□□□ 0.33
PRKNO60260 CHPF-201ENST00000243776 3013 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
PRKNO60260 PKN1-201ENST00000242783 3069 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
PRKNO60260 BET1L-202ENST00000332865 533 ntTSL 5 BASIC17.12■□□□□ 0.33
PRKNO60260 APCDD1-201ENST00000355285 3809 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
PRKNO60260 PBXIP1-201ENST00000368460 1175 ntAPPRIS ALT2 TSL 3 BASIC17.12■□□□□ 0.33
PRKNO60260 SYCE1L-201ENST00000378644 858 ntAPPRIS P2 TSL 5 BASIC17.12■□□□□ 0.33
PRKNO60260 ZNF337-AS1-204ENST00000428254 817 ntTSL 5 BASIC17.12■□□□□ 0.33
PRKNO60260 ZNF444P1-201ENST00000559497 298 ntBASIC17.12■□□□□ 0.33
PRKNO60260 NEUROD2-201ENST00000302584 2041 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
PRKNO60260 ZNRF3-203ENST00000544604 6851 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
PRKNO60260 TP53BP2-201ENST00000343537 4651 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
PRKNO60260 SRRM2-AS1-203ENST00000571305 1344 ntTSL 2 BASIC17.12■□□□□ 0.33
PRKNO60260 ADAMTS9-202ENST00000459780 2871 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
PRKNO60260 AL445433.2-201ENST00000425113 2544 ntTSL 2 BASIC17.12■□□□□ 0.33
PRKNO60260 ZNF655-203ENST00000357864 1370 ntTSL 2 BASIC17.12■□□□□ 0.33
PRKNO60260 TFAP4-201ENST00000204517 2215 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
PRKNO60260 C6orf118-201ENST00000230301 1812 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
PRKNO60260 C6orf203-202ENST00000405204 1420 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
PRKNO60260 CTSA-201ENST00000191018 1898 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
PRKNO60260 ISL2-201ENST00000290759 1881 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
PRKNO60260 LUC7L-201ENST00000293872 1456 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
PRKNO60260 SEMA7A-203ENST00000543145 2304 ntTSL 2 BASIC17.12■□□□□ 0.33
PRKNO60260 ARHGEF18-202ENST00000359920 5733 ntAPPRIS ALT2 TSL 2 BASIC17.12■□□□□ 0.33
PRKNO60260 PFDN6-206ENST00000463584 1915 ntTSL 3 BASIC17.11■□□□□ 0.33
PRKNO60260 PXK-206ENST00000463280 2825 ntTSL 2 BASIC17.11■□□□□ 0.33
PRKNO60260 TMPRSS5-205ENST00000538955 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
PRKNO60260 AC009113.1-201ENST00000570267 2443 ntBASIC17.11■□□□□ 0.33
PRKNO60260 MYLKP1-201ENST00000509077 1580 ntBASIC17.11■□□□□ 0.33
PRKNO60260 CADPS2-208ENST00000615869 6066 ntAPPRIS ALT1 TSL 5 BASIC17.11■□□□□ 0.33
PRKNO60260 THAP3-203ENST00000377627 2053 ntAPPRIS P3 TSL 2 BASIC17.11■□□□□ 0.33
PRKNO60260 STRADB-202ENST00000392249 2190 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
PRKNO60260 GTF2IP4-202ENST00000544802 3609 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
PRKNO60260 PCED1A-201ENST00000356872 1706 ntTSL 2 BASIC17.11■□□□□ 0.33
PRKNO60260 NOP14-204ENST00000502735 2723 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
PRKNO60260 GPX4-201ENST00000354171 919 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
PRKNO60260 CD1E-210ENST00000368165 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
PRKNO60260 BECN2-201ENST00000419583 1296 ntAPPRIS P1 BASIC17.11■□□□□ 0.33
PRKNO60260 CD1E-214ENST00000452291 745 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
PRKNO60260 LBX1-AS1-203ENST00000454527 740 ntTSL 5 BASIC17.11■□□□□ 0.33
PRKNO60260 GOLGA2P7-203ENST00000557881 896 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
PRKNO60260 AC034238.1-212ENST00000596137 723 ntTSL 5 BASIC17.11■□□□□ 0.33
PRKNO60260 AL391807.1-203ENST00000604392 2365 ntBASIC17.11■□□□□ 0.33
PRKNO60260 AC005332.1-201ENST00000577698 1310 ntBASIC17.11■□□□□ 0.33
PRKNO60260 CLIP2-201ENST00000223398 5563 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
PRKNO60260 RNF165-205ENST00000588679 2904 ntBASIC17.11■□□□□ 0.33
PRKNO60260 ROCK2-202ENST00000315872 8292 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
PRKNO60260 ASZ1-201ENST00000284629 1865 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
PRKNO60260 GCGR-202ENST00000570996 1872 ntAPPRIS ALT2 TSL 2 BASIC17.11■□□□□ 0.33
PRKNO60260 KRT81-201ENST00000327741 1929 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
PRKNO60260 C1QTNF1-209ENST00000581774 1368 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
PRKNO60260 SCAND1-203ENST00000615116 1371 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
PRKNO60260 ZNF668-202ENST00000394983 2717 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
PRKNO60260 STARD3-201ENST00000336308 2132 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
PRKNO60260 RELL2-202ENST00000444782 2154 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
PRKNO60260 LYSMD4-201ENST00000332728 2847 ntTSL 4 BASIC17.11■□□□□ 0.33
PRKNO60260 RAPGEF5-203ENST00000405243 2800 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 36.5 ms