Protein–RNA interactions for Protein: O43395

PRPF3, U4/U6 small nuclear ribonucleoprotein Prp3, humanhuman

Known RBP Predictions only

Length 683 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF3O43395 RHEBL1-201ENST00000301068 1210 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
PRPF3O43395 HLA-F-217ENST00000334668 1283 ntAPPRIS ALT2 BASIC21.18■□□□□ 0.98
PRPF3O43395 ABCD1-202ENST00000370129 1016 ntTSL 2 BASIC21.18■□□□□ 0.98
PRPF3O43395 TTC22-201ENST00000371274 2149 ntTSL 2 BASIC21.18■□□□□ 0.98
PRPF3O43395 TSPY8-203ENST00000383005 435 ntTSL 5 BASIC21.18■□□□□ 0.98
PRPF3O43395 PLCB1-204ENST00000404098 1260 ntTSL 3 BASIC21.18■□□□□ 0.98
PRPF3O43395 HLA-F-220ENST00000434407 884 ntBASIC21.18■□□□□ 0.98
PRPF3O43395 AL359075.1-203ENST00000462729 1002 ntBASIC21.18■□□□□ 0.98
PRPF3O43395 AC092597.1-201ENST00000487352 616 ntBASIC21.18■□□□□ 0.98
PRPF3O43395 CCNG1-211ENST00000512163 919 ntTSL 2 BASIC21.18■□□□□ 0.98
PRPF3O43395 SLC9A3R2-208ENST00000566198 1199 ntTSL 2 BASIC21.18■□□□□ 0.98
PRPF3O43395 C16orf74-207ENST00000602914 761 ntAPPRIS ALT2 TSL 2 BASIC21.18■□□□□ 0.98
PRPF3O43395 DFFB-212ENST00000625756 649 ntTSL 5 BASIC21.18■□□□□ 0.98
PRPF3O43395 TOR2A-205ENST00000463577 2211 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
PRPF3O43395 UBE2E1-202ENST00000346855 1398 ntTSL 3 BASIC21.18■□□□□ 0.98
PRPF3O43395 MIR4300HG-201ENST00000500502 1397 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
PRPF3O43395 TCTN1-225ENST00000551590 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
PRPF3O43395 ZFC3H1-211ENST00000552037 1484 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
PRPF3O43395 DAPK2-205ENST00000558069 1473 ntTSL 5 BASIC21.18■□□□□ 0.98
PRPF3O43395 STARD7-AS1-202ENST00000446816 1527 ntTSL 2 BASIC21.18■□□□□ 0.98
PRPF3O43395 FAM20B-201ENST00000263733 5984 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
PRPF3O43395 NPTX2-201ENST00000265634 2700 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
PRPF3O43395 WDR90-201ENST00000293879 5488 ntAPPRIS P2 TSL 5 BASIC21.18■□□□□ 0.98
PRPF3O43395 GGNBP2-210ENST00000611219 2315 ntTSL 2 BASIC21.17■□□□□ 0.98
PRPF3O43395 KCNA3-201ENST00000369769 2569 ntAPPRIS P1 BASIC21.17■□□□□ 0.98
PRPF3O43395 HELT-202ENST00000505610 846 ntAPPRIS ALT1 TSL 1 (best) BASIC21.17■□□□□ 0.98
PRPF3O43395 AC010531.1-201ENST00000568879 953 ntAPPRIS P1 TSL 4 BASIC21.17■□□□□ 0.98
PRPF3O43395 BVES-AS1-203ENST00000580511 853 ntTSL 5 BASIC21.17■□□□□ 0.98
PRPF3O43395 PSMD8-202ENST00000585598 541 ntTSL 5 BASIC21.17■□□□□ 0.98
PRPF3O43395 PSMD8-207ENST00000592035 1581 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
PRPF3O43395 GPANK1-204ENST00000375900 1814 ntAPPRIS P1 TSL 2 BASIC21.17■□□□□ 0.98
PRPF3O43395 TH-205ENST00000381175 1898 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
PRPF3O43395 BIRC8-201ENST00000426466 2026 ntAPPRIS P1 BASIC21.17■□□□□ 0.98
PRPF3O43395 CHRND-201ENST00000258385 2112 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
PRPF3O43395 PTGER3-201ENST00000306666 2333 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
PRPF3O43395 PRKAR1B-212ENST00000544935 2494 ntAPPRIS P1 TSL 5 BASIC21.17■□□□□ 0.98
PRPF3O43395 PIF1-205ENST00000559239 2677 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
PRPF3O43395 VOPP1-201ENST00000285279 2962 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
PRPF3O43395 ANKRD40-201ENST00000285243 4184 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
PRPF3O43395 TDRKH-203ENST00000368824 2824 ntAPPRIS P2 TSL 1 (best) BASIC21.16■□□□□ 0.98
PRPF3O43395 CD248-201ENST00000311330 2558 ntAPPRIS P1 BASIC21.16■□□□□ 0.98
PRPF3O43395 FAM131A-202ENST00000340957 2421 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
PRPF3O43395 SNX11-201ENST00000359238 2315 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
PRPF3O43395 COMP-202ENST00000425807 2292 ntTSL 2 BASIC21.16■□□□□ 0.98
PRPF3O43395 PLK1-201ENST00000300093 2227 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
PRPF3O43395 MINPP1-201ENST00000371994 2183 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
PRPF3O43395 AATF-208ENST00000619387 2141 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
PRPF3O43395 TCP11-201ENST00000244645 2018 ntAPPRIS P3 TSL 1 (best) BASIC21.16■□□□□ 0.98
PRPF3O43395 C21orf59-201ENST00000290155 1692 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
PRPF3O43395 EPB41L4B-201ENST00000374557 4006 ntAPPRIS ALT2 TSL 1 (best) BASIC21.16■□□□□ 0.98
PRPF3O43395 DNAJC4-201ENST00000321460 1015 ntAPPRIS ALT2 TSL 1 (best) BASIC21.16■□□□□ 0.98
PRPF3O43395 GUK1-204ENST00000366721 689 ntTSL 3 BASIC21.16■□□□□ 0.98
PRPF3O43395 HAGLR-204ENST00000425005 623 ntTSL 3 BASIC21.16■□□□□ 0.98
PRPF3O43395 AC112907.2-201ENST00000448639 330 ntBASIC21.16■□□□□ 0.98
PRPF3O43395 AC092647.4-201ENST00000457211 535 ntBASIC21.16■□□□□ 0.98
PRPF3O43395 ELAVL1-202ENST00000593807 856 ntTSL 3 BASIC21.16■□□□□ 0.98
PRPF3O43395 AL136038.4-201ENST00000603606 1261 ntBASIC21.16■□□□□ 0.98
PRPF3O43395 RNASET2-213ENST00000611959 1124 ntTSL 5 BASIC21.16■□□□□ 0.98
PRPF3O43395 IFNL4-202ENST00000616270 1132 ntAPPRIS ALT2 TSL 1 (best) BASIC21.16■□□□□ 0.98
PRPF3O43395 AC092902.2-222ENST00000626312 568 ntTSL 5 BASIC21.16■□□□□ 0.98
PRPF3O43395 CPAMD8-202ENST00000388925 5355 ntTSL 5 BASIC21.16■□□□□ 0.98
PRPF3O43395 SLC12A4-202ENST00000422611 4670 ntTSL 2 BASIC21.16■□□□□ 0.98
PRPF3O43395 TADA3-202ENST00000343450 2554 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
PRPF3O43395 PPP1R7-201ENST00000234038 2386 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
PRPF3O43395 MED9-201ENST00000268711 2228 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
PRPF3O43395 AP001476.1-201ENST00000451618 2198 ntTSL 2 BASIC21.16■□□□□ 0.98
PRPF3O43395 PHYKPL-201ENST00000308158 2038 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
PRPF3O43395 MYBPH-201ENST00000255416 1805 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
PRPF3O43395 ERICH1-201ENST00000262109 1813 ntAPPRIS P2 TSL 1 (best) BASIC21.15■□□□□ 0.98
PRPF3O43395 PHGDH-209ENST00000641074 1780 ntBASIC21.15■□□□□ 0.98
PRPF3O43395 PCSK5-202ENST00000376767 2845 ntTSL 2 BASIC21.15■□□□□ 0.98
PRPF3O43395 DNM1-206ENST00000475805 2710 ntAPPRIS ALT1 TSL 2 BASIC21.15■□□□□ 0.98
PRPF3O43395 CENPT-215ENST00000564817 1638 ntAPPRIS ALT2 TSL 5 BASIC21.15■□□□□ 0.98
PRPF3O43395 GCSH-208ENST00000639169 2537 ntTSL 2 BASIC21.15■□□□□ 0.98
PRPF3O43395 C6orf203-202ENST00000405204 1420 ntAPPRIS P1 TSL 2 BASIC21.15■□□□□ 0.98
PRPF3O43395 WNT9B-201ENST00000290015 1376 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
PRPF3O43395 ZFYVE21-202ENST00000311141 1383 ntAPPRIS P3 TSL 1 (best) BASIC21.15■□□□□ 0.98
PRPF3O43395 COPE-201ENST00000262812 1141 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
PRPF3O43395 TCAP-201ENST00000309889 2123 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
PRPF3O43395 COPE-203ENST00000351079 907 ntTSL 2 BASIC21.15■□□□□ 0.98
PRPF3O43395 SUV39H2-204ENST00000378325 1292 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
PRPF3O43395 MALL-203ENST00000427178 1070 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
PRPF3O43395 IFI27L2-206ENST00000556727 556 ntTSL 3 BASIC21.15■□□□□ 0.98
PRPF3O43395 ILKAP-212ENST00000622223 1088 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
PRPF3O43395 SDF4-201ENST00000263741 2079 ntAPPRIS P3 TSL 1 (best) BASIC21.15■□□□□ 0.98
PRPF3O43395 ZNF395-211ENST00000523202 2068 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
PRPF3O43395 AIRN-201ENST00000601203 4374 ntBASIC21.15■□□□□ 0.98
PRPF3O43395 DNM1-211ENST00000627061 2724 ntTSL 5 BASIC21.15■□□□□ 0.98
PRPF3O43395 FIBCD1-201ENST00000372337 1868 ntTSL 5 BASIC21.15■□□□□ 0.98
PRPF3O43395 AL354751.1-201ENST00000412768 1863 ntBASIC21.15■□□□□ 0.98
PRPF3O43395 WIPF1-206ENST00000409891 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
PRPF3O43395 POLR3E-209ENST00000564209 2464 ntTSL 2 BASIC21.15■□□□□ 0.98
PRPF3O43395 RMND5A-201ENST00000283632 6301 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
PRPF3O43395 LRRC43-201ENST00000339777 2028 ntAPPRIS P2 TSL 5 BASIC21.14■□□□□ 0.98
PRPF3O43395 PRELID3A-209ENST00000592149 2001 ntTSL 2 BASIC21.14■□□□□ 0.98
PRPF3O43395 ZNF655-203ENST00000357864 1370 ntTSL 2 BASIC21.14■□□□□ 0.98
PRPF3O43395 MMD2-202ENST00000404774 2415 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
PRPF3O43395 POR-209ENST00000439269 1858 ntTSL 2 BASIC21.14■□□□□ 0.97
PRPF3O43395 MTSS1L-201ENST00000338779 4992 ntAPPRIS P2 TSL 1 (best) BASIC21.14■□□□□ 0.97
PRPF3O43395 TMEM190-201ENST00000291934 593 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 27.8 ms