Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 NDUFAF2-201ENST00000296597 719 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
MSH4O15457 TMEM88-201ENST00000301599 875 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
MSH4O15457 INSL3-202ENST00000379695 899 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
MSH4O15457 AC093901.1-201ENST00000414886 778 ntTSL 5 BASIC20.64■□□□□ 0.89
MSH4O15457 UPK3BP1-201ENST00000428678 509 ntBASIC20.64■□□□□ 0.89
MSH4O15457 AC022424.1-201ENST00000512155 889 ntTSL 3 BASIC20.64■□□□□ 0.89
MSH4O15457 ABCD4-228ENST00000557588 763 ntTSL 3 BASIC20.64■□□□□ 0.89
MSH4O15457 AC099518.3-201ENST00000564808 809 ntAPPRIS P5 TSL 4 BASIC20.64■□□□□ 0.89
MSH4O15457 MCRIP1-206ENST00000573478 1123 ntTSL 2 BASIC20.64■□□□□ 0.89
MSH4O15457 AC005332.3-201ENST00000589904 676 ntBASIC20.64■□□□□ 0.89
MSH4O15457 AC016582.2-201ENST00000591908 446 ntTSL 3 BASIC20.64■□□□□ 0.89
MSH4O15457 AL807752.6-202ENST00000622933 765 ntAPPRIS P5 TSL 3 BASIC20.64■□□□□ 0.89
MSH4O15457 CALM2-209ENST00000628793 1103 ntTSL 5 BASIC20.64■□□□□ 0.89
MSH4O15457 TRA2A-201ENST00000297071 1845 ntAPPRIS P3 TSL 1 (best) BASIC20.64■□□□□ 0.89
MSH4O15457 GFER-201ENST00000248114 2345 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
MSH4O15457 DIP2A-203ENST00000435722 2760 ntTSL 2 BASIC20.63■□□□□ 0.89
MSH4O15457 STARD3-201ENST00000336308 2132 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
MSH4O15457 KLHDC2-201ENST00000298307 5514 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
MSH4O15457 GTF3C5-202ENST00000372097 2406 ntAPPRIS P3 TSL 1 (best) BASIC20.63■□□□□ 0.89
MSH4O15457 HSD17B10-201ENST00000168216 960 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
MSH4O15457 GUCA1B-201ENST00000230361 1113 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
MSH4O15457 HAAO-201ENST00000294973 1265 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
MSH4O15457 TBPL1-203ENST00000367871 808 ntTSL 2 BASIC20.63■□□□□ 0.89
MSH4O15457 HES2-202ENST00000377836 507 ntTSL 2 BASIC20.63■□□□□ 0.89
MSH4O15457 PLPP5-202ENST00000422581 853 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
MSH4O15457 HOXB-AS3-203ENST00000465846 434 ntTSL 3 BASIC20.63■□□□□ 0.89
MSH4O15457 LIMD2-211ENST00000583211 1298 ntTSL 3 BASIC20.63■□□□□ 0.89
MSH4O15457 ACVR1B-203ENST00000426655 1782 ntTSL 2 BASIC20.63■□□□□ 0.89
MSH4O15457 RNPS1-219ENST00000566397 1685 ntTSL 2 BASIC20.63■□□□□ 0.89
MSH4O15457 ALKBH4-201ENST00000292566 2105 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
MSH4O15457 ATRIP-201ENST00000320211 2590 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
MSH4O15457 INPP4A-201ENST00000074304 6752 ntTSL 5 BASIC20.63■□□□□ 0.89
MSH4O15457 LINC00311-201ENST00000366314 1566 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
MSH4O15457 TMEM109-201ENST00000227525 2413 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
MSH4O15457 NCK1-207ENST00000481752 1971 ntAPPRIS P1 TSL 5 BASIC20.63■□□□□ 0.89
MSH4O15457 TMEM121B-201ENST00000331437 4954 ntAPPRIS P3 BASIC20.63■□□□□ 0.89
MSH4O15457 RPL3-201ENST00000216146 1442 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
MSH4O15457 PTGER3-202ENST00000351052 1404 ntAPPRIS ALT2 TSL 5 BASIC20.62■□□□□ 0.89
MSH4O15457 LIN28B-AS1-203ENST00000636682 1797 ntTSL 3 BASIC20.62■□□□□ 0.89
MSH4O15457 WNT9B-201ENST00000290015 1376 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
MSH4O15457 RGS3-202ENST00000342620 1714 ntTSL 5 BASIC20.62■□□□□ 0.89
MSH4O15457 ZNF114-206ENST00000600687 1742 ntAPPRIS P1 TSL 5 BASIC20.62■□□□□ 0.89
MSH4O15457 ZNF692-204ENST00000451251 2065 ntAPPRIS ALT2 TSL 2 BASIC20.62■□□□□ 0.89
MSH4O15457 ZNF74-203ENST00000403682 2789 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
MSH4O15457 BCL2L10-201ENST00000260442 1249 ntAPPRIS P3 TSL 1 (best) BASIC20.62■□□□□ 0.89
MSH4O15457 CDC26-201ENST00000374206 872 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
MSH4O15457 AC115618.1-201ENST00000376775 549 ntTSL 3 BASIC20.62■□□□□ 0.89
MSH4O15457 IGHGP-201ENST00000390555 1178 ntBASIC20.62■□□□□ 0.89
MSH4O15457 AC079031.1-201ENST00000542627 1035 ntTSL 3 BASIC20.62■□□□□ 0.89
MSH4O15457 MRPL52-210ENST00000555345 895 ntTSL 2 BASIC20.62■□□□□ 0.89
MSH4O15457 SLC9A3R2-208ENST00000566198 1199 ntTSL 2 BASIC20.62■□□□□ 0.89
MSH4O15457 NTF4-201ENST00000593537 932 ntAPPRIS P1 BASIC20.62■□□□□ 0.89
MSH4O15457 AL390719.2-201ENST00000606993 987 ntBASIC20.62■□□□□ 0.89
MSH4O15457 C6orf48-210ENST00000614363 748 ntAPPRIS P1 TSL 5 BASIC20.62■□□□□ 0.89
MSH4O15457 GALNT8-202ENST00000433855 5977 ntTSL 2 BASIC20.62■□□□□ 0.89
MSH4O15457 Z83836.1-201ENST00000624605 1642 ntBASIC20.62■□□□□ 0.89
MSH4O15457 DHRS12-201ENST00000218981 1970 ntTSL 2 BASIC20.62■□□□□ 0.89
MSH4O15457 LEMD2-201ENST00000293760 2958 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
MSH4O15457 PALM3-201ENST00000340790 2262 ntAPPRIS P2 TSL 5 BASIC20.62■□□□□ 0.89
MSH4O15457 GUCA1A-202ENST00000372958 1575 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
MSH4O15457 SIL1-202ENST00000394817 1923 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
MSH4O15457 ASIC3-202ENST00000349064 1895 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
MSH4O15457 CHID1-203ENST00000436108 1477 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
MSH4O15457 NARF-204ENST00000390006 1766 ntTSL 2 BASIC20.62■□□□□ 0.89
MSH4O15457 PRR5-201ENST00000006251 1767 ntTSL 2 BASIC20.62■□□□□ 0.89
MSH4O15457 AC138356.1-201ENST00000330539 2086 ntTSL 2 BASIC20.62■□□□□ 0.89
MSH4O15457 EDN3-204ENST00000371028 2397 ntAPPRIS P4 TSL 5 BASIC20.61■□□□□ 0.89
MSH4O15457 SERPINE2-206ENST00000447280 1716 ntTSL 2 BASIC20.61■□□□□ 0.89
MSH4O15457 ESPNP-201ENST00000270691 2015 ntBASIC20.61■□□□□ 0.89
MSH4O15457 GLB1-202ENST00000307377 2018 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
MSH4O15457 GRM5-201ENST00000305432 4475 ntAPPRIS P3 TSL 1 (best) BASIC20.61■□□□□ 0.89
MSH4O15457 CCDC74B-202ENST00000392984 1353 ntAPPRIS ALT2 TSL 5 BASIC20.61■□□□□ 0.89
MSH4O15457 NKX1-2-201ENST00000451024 3364 ntAPPRIS P1 TSL 5 BASIC20.61■□□□□ 0.89
MSH4O15457 WT1-205ENST00000452863 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
MSH4O15457 VCX3B-203ENST00000444481 812 ntAPPRIS ALT2 TSL 5 BASIC20.61■□□□□ 0.89
MSH4O15457 SURF4-206ENST00000485435 1206 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
MSH4O15457 VCX3A-203ENST00000612369 812 ntAPPRIS ALT2 TSL 5 BASIC20.61■□□□□ 0.89
MSH4O15457 BRMS1L-201ENST00000216807 2657 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
MSH4O15457 STARD10-218ENST00000543304 1513 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
MSH4O15457 IQCJ-SCHIP1-207ENST00000638749 2633 ntAPPRIS P3 TSL 1 (best) BASIC20.61■□□□□ 0.89
MSH4O15457 SERPINA4-201ENST00000298841 1784 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
MSH4O15457 DOC2A-208ENST00000564944 1782 ntAPPRIS P1 TSL 5 BASIC20.61■□□□□ 0.89
MSH4O15457 TMPRSS12-201ENST00000398458 1450 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
MSH4O15457 TRIM13-206ENST00000457662 1489 ntAPPRIS P3 TSL 1 (best) BASIC20.61■□□□□ 0.89
MSH4O15457 SP7-203ENST00000537210 1472 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
MSH4O15457 COQ9-210ENST00000567072 1482 ntTSL 3 BASIC20.61■□□□□ 0.89
MSH4O15457 ANKS3-202ENST00000446014 2265 ntTSL 5 BASIC20.61■□□□□ 0.89
MSH4O15457 ACSM2A-201ENST00000219054 1988 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
MSH4O15457 ATP11C-203ENST00000370557 6924 ntAPPRIS ALT2 TSL 5 BASIC20.61■□□□□ 0.89
MSH4O15457 C21orf59-201ENST00000290155 1692 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
MSH4O15457 TULP1-201ENST00000229771 2162 ntAPPRIS P2 TSL 1 (best) BASIC20.61■□□□□ 0.89
MSH4O15457 RELL2-202ENST00000444782 2154 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
MSH4O15457 PTTG1IP-203ENST00000397887 2413 ntTSL 4 BASIC20.61■□□□□ 0.89
MSH4O15457 KRT24-201ENST00000264651 1881 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
MSH4O15457 KCNQ2-218ENST00000629676 2399 ntTSL 5 BASIC20.6■□□□□ 0.89
MSH4O15457 TRPC1-203ENST00000476941 3061 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
MSH4O15457 RHOBTB3-201ENST00000379982 5537 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
MSH4O15457 FBXL20-202ENST00000394294 2309 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
MSH4O15457 GMCL1P1-201ENST00000463439 1581 ntBASIC20.6■□□□□ 0.89
MSH4O15457 UBC-206ENST00000538617 1303 ntTSL 5 BASIC20.6■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 28.9 ms