Protein–RNA interactions for Protein: A6NC98

CCDC88B, Coiled-coil domain-containing protein 88B, humanhuman

Predictions only

Length 1,476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88BA6NC98 AC008687.5-201ENST00000593746 558 ntBASIC31.84■■■□□ 2.69
CCDC88BA6NC98 POU4F1-201ENST00000377208 4547 ntAPPRIS P1 TSL 1 (best) BASIC31.84■■■□□ 2.69
CCDC88BA6NC98 SHKBP1-225ENST00000600733 2284 ntTSL 5 BASIC31.84■■■□□ 2.69
CCDC88BA6NC98 FBXL15-202ENST00000369956 2344 ntAPPRIS ALT1 TSL 1 (best) BASIC31.84■■■□□ 2.69
CCDC88BA6NC98 ANKRD53-202ENST00000360589 1666 ntAPPRIS ALT2 TSL 2 BASIC31.84■■■□□ 2.69
CCDC88BA6NC98 MATN4-202ENST00000360607 2127 ntTSL 1 (best) BASIC31.84■■■□□ 2.69
CCDC88BA6NC98 PRMT5-201ENST00000216350 2271 ntTSL 2 BASIC31.84■■■□□ 2.69
CCDC88BA6NC98 SPOCK3-204ENST00000502330 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC31.84■■■□□ 2.69
CCDC88BA6NC98 ZPBP2-204ENST00000584588 1277 ntTSL 5 BASIC31.84■■■□□ 2.69
CCDC88BA6NC98 TERC-201ENST00000602385 541 ntBASIC31.84■■■□□ 2.69
CCDC88BA6NC98 PTN-201ENST00000348225 1614 ntAPPRIS P1 TSL 1 (best) BASIC31.84■■■□□ 2.69
CCDC88BA6NC98 GLYCTK-202ENST00000436784 1982 ntAPPRIS P1 TSL 1 (best) BASIC31.84■■■□□ 2.69
CCDC88BA6NC98 PDZD3-203ENST00000525131 1882 ntTSL 2 BASIC31.84■■■□□ 2.69
CCDC88BA6NC98 RBFOX1-204ENST00000422070 1684 ntTSL 2 BASIC31.83■■■□□ 2.69
CCDC88BA6NC98 STMN3-201ENST00000370053 2255 ntAPPRIS P1 TSL 1 (best) BASIC31.83■■■□□ 2.69
CCDC88BA6NC98 HOXC10-201ENST00000303460 1936 ntAPPRIS P1 TSL 1 (best) BASIC31.83■■■□□ 2.69
CCDC88BA6NC98 C8orf46-215ENST00000522977 1347 ntTSL 2 BASIC31.83■■■□□ 2.69
CCDC88BA6NC98 REEP4-202ENST00000334530 1476 ntTSL 1 (best) BASIC31.83■■■□□ 2.69
CCDC88BA6NC98 SLC16A3-221ENST00000617373 2048 ntAPPRIS P1 TSL 5 BASIC31.83■■■□□ 2.69
CCDC88BA6NC98 SLC16A3-222ENST00000619321 2015 ntAPPRIS P1 TSL 5 BASIC31.83■■■□□ 2.69
CCDC88BA6NC98 LAD1-202ENST00000391967 2906 ntTSL 1 (best) BASIC31.83■■■□□ 2.69
CCDC88BA6NC98 RAMP1-201ENST00000254661 910 ntAPPRIS P1 TSL 1 (best) BASIC31.83■■■□□ 2.69
CCDC88BA6NC98 ADK-206ENST00000541550 2222 ntTSL 2 BASIC31.83■■■□□ 2.69
CCDC88BA6NC98 TYMS-203ENST00000323274 1662 ntAPPRIS P1 TSL 1 (best) BASIC31.82■■■□□ 2.68
CCDC88BA6NC98 GHDC-212ENST00000593209 1827 ntTSL 5 BASIC31.82■■■□□ 2.68
CCDC88BA6NC98 SPOCK3-215ENST00000510741 1963 ntAPPRIS ALT2 TSL 5 BASIC31.82■■■□□ 2.68
CCDC88BA6NC98 C2orf49-202ENST00000410049 854 ntTSL 1 (best) BASIC31.82■■■□□ 2.68
CCDC88BA6NC98 TSPY3-202ENST00000440483 414 ntTSL 5 BASIC31.82■■■□□ 2.68
CCDC88BA6NC98 ABCD1P5-201ENST00000445663 754 ntBASIC31.82■■■□□ 2.68
CCDC88BA6NC98 AC026336.2-201ENST00000563922 763 ntTSL 2 BASIC31.82■■■□□ 2.68
CCDC88BA6NC98 TEX264-216ENST00000614067 1174 ntAPPRIS ALT2 TSL 3 BASIC31.82■■■□□ 2.68
CCDC88BA6NC98 JKAMP-201ENST00000261247 1726 ntAPPRIS P1 TSL 1 (best) BASIC31.82■■■□□ 2.68
CCDC88BA6NC98 ANXA8-208ENST00000611843 2174 ntTSL 2 BASIC31.82■■■□□ 2.68
CCDC88BA6NC98 LINC01126-201ENST00000623515 1646 ntBASIC31.82■■■□□ 2.68
CCDC88BA6NC98 NARS2-201ENST00000281038 2519 ntAPPRIS P1 TSL 1 (best) BASIC31.82■■■□□ 2.68
CCDC88BA6NC98 COL13A1-202ENST00000357811 2991 ntAPPRIS ALT2 TSL 5 BASIC31.82■■■□□ 2.68
CCDC88BA6NC98 NRG2-204ENST00000358522 2559 ntAPPRIS P5 TSL 1 (best) BASIC31.81■■■□□ 2.68
CCDC88BA6NC98 PTGIR-201ENST00000291294 2107 ntAPPRIS P1 TSL 1 (best) BASIC31.81■■■□□ 2.68
CCDC88BA6NC98 ACBD6-201ENST00000367595 1670 ntAPPRIS P1 TSL 1 (best) BASIC31.81■■■□□ 2.68
CCDC88BA6NC98 SEPT4-201ENST00000317256 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC31.81■■■□□ 2.68
CCDC88BA6NC98 MYLKP1-201ENST00000509077 1580 ntBASIC31.81■■■□□ 2.68
CCDC88BA6NC98 LGALS7B-201ENST00000314980 483 ntAPPRIS P1 TSL 1 (best) BASIC31.81■■■□□ 2.68
CCDC88BA6NC98 ZAR1L-201ENST00000345108 1103 ntAPPRIS P1 TSL 1 (best) BASIC31.81■■■□□ 2.68
CCDC88BA6NC98 AFG3L1P-210ENST00000431757 569 ntTSL 4 BASIC31.81■■■□□ 2.68
CCDC88BA6NC98 RPS2P1-201ENST00000434010 821 ntBASIC31.81■■■□□ 2.68
CCDC88BA6NC98 MIR3936HG-202ENST00000457998 733 ntTSL 2 BASIC31.81■■■□□ 2.68
CCDC88BA6NC98 MCRIP1-211ENST00000576679 751 ntTSL 2 BASIC31.81■■■□□ 2.68
CCDC88BA6NC98 BORCS8-206ENST00000585679 801 ntTSL 3 BASIC31.81■■■□□ 2.68
CCDC88BA6NC98 FZD8-201ENST00000374694 4030 ntAPPRIS P1 BASIC31.81■■■□□ 2.68
CCDC88BA6NC98 LEXM-201ENST00000358193 1777 ntAPPRIS P3 TSL 1 (best) BASIC31.81■■■□□ 2.68
CCDC88BA6NC98 PTGES2-201ENST00000277462 1614 ntTSL 2 BASIC31.81■■■□□ 2.68
CCDC88BA6NC98 TNFSF9-201ENST00000245817 1665 ntAPPRIS P1 TSL 1 (best) BASIC31.81■■■□□ 2.68
CCDC88BA6NC98 MMP28-204ENST00000615136 2033 ntAPPRIS ALT2 TSL 1 (best) BASIC31.81■■■□□ 2.68
CCDC88BA6NC98 SYT15-201ENST00000374321 1369 ntAPPRIS P4 TSL 2 BASIC31.81■■■□□ 2.68
CCDC88BA6NC98 LRFN4-201ENST00000309602 2431 ntAPPRIS P1 TSL 1 (best) BASIC31.8■■■□□ 2.68
CCDC88BA6NC98 TMEM129-201ENST00000303277 2678 ntTSL 1 (best) BASIC31.8■■■□□ 2.68
CCDC88BA6NC98 DHRS12-201ENST00000218981 1970 ntTSL 2 BASIC31.8■■■□□ 2.68
CCDC88BA6NC98 TOP1MT-218ENST00000523676 1982 ntTSL 5 BASIC31.8■■■□□ 2.68
CCDC88BA6NC98 FOXG1-201ENST00000313071 4890 ntAPPRIS P1 BASIC31.8■■■□□ 2.68
CCDC88BA6NC98 COLEC11-207ENST00000404205 1062 ntTSL 1 (best) BASIC31.8■■■□□ 2.68
CCDC88BA6NC98 LBH-204ENST00000406087 559 ntTSL 4 BASIC31.8■■■□□ 2.68
CCDC88BA6NC98 KRT73-AS1-202ENST00000551089 563 ntTSL 4 BASIC31.8■■■□□ 2.68
CCDC88BA6NC98 PNMT-203ENST00000581428 677 ntTSL 2 BASIC31.8■■■□□ 2.68
CCDC88BA6NC98 PSMA6-216ENST00000627895 484 ntTSL 5 BASIC31.8■■■□□ 2.68
CCDC88BA6NC98 FDXR-214ENST00000581530 1827 ntAPPRIS P3 TSL 1 (best) BASIC31.8■■■□□ 2.68
CCDC88BA6NC98 EXOC3L2-202ENST00000413988 2964 ntAPPRIS P1 TSL 5 BASIC31.8■■■□□ 2.68
CCDC88BA6NC98 SLC16A5-202ENST00000450736 2051 ntAPPRIS P2 TSL 1 (best) BASIC31.8■■■□□ 2.68
CCDC88BA6NC98 TMEM216-201ENST00000334888 1306 ntAPPRIS ALT2 TSL 2 BASIC31.8■■■□□ 2.68
CCDC88BA6NC98 AIRE-201ENST00000291582 2257 ntAPPRIS P1 TSL 1 (best) BASIC31.8■■■□□ 2.68
CCDC88BA6NC98 PYCR2-208ENST00000612039 1549 ntTSL 3 BASIC31.8■■■□□ 2.68
CCDC88BA6NC98 PYCR2-209ENST00000612651 1538 ntTSL 5 BASIC31.8■■■□□ 2.68
CCDC88BA6NC98 NIFK-201ENST00000285814 1734 ntAPPRIS P1 TSL 1 (best) BASIC31.8■■■□□ 2.68
CCDC88BA6NC98 PLEKHA2-206ENST00000521746 2127 ntTSL 5 BASIC31.8■■■□□ 2.68
CCDC88BA6NC98 ANAPC13-206ENST00000514612 1420 ntAPPRIS P1 TSL 2 BASIC31.8■■■□□ 2.68
CCDC88BA6NC98 NUDT6-201ENST00000304430 1169 ntAPPRIS P1 TSL 1 (best) BASIC31.79■■■□□ 2.68
CCDC88BA6NC98 IGLL1-202ENST00000330377 901 ntAPPRIS P1 TSL 1 (best) BASIC31.79■■■□□ 2.68
CCDC88BA6NC98 MRPS18A-201ENST00000372116 785 ntTSL 2 BASIC31.79■■■□□ 2.68
CCDC88BA6NC98 AC098831.1-202ENST00000438821 336 ntBASIC31.79■■■□□ 2.68
CCDC88BA6NC98 RAB42-202ENST00000465518 857 ntAPPRIS P1 TSL 2 BASIC31.79■■■□□ 2.68
CCDC88BA6NC98 NT5C3B-215ENST00000521789 993 ntTSL 3 BASIC31.79■■■□□ 2.68
CCDC88BA6NC98 AC015712.1-203ENST00000559331 593 ntTSL 3 BASIC31.79■■■□□ 2.68
CCDC88BA6NC98 TMEM220-AS1-202ENST00000580899 561 ntTSL 4 BASIC31.79■■■□□ 2.68
CCDC88BA6NC98 AC140113.2-201ENST00000604370 208 ntBASIC31.79■■■□□ 2.68
CCDC88BA6NC98 AC243773.2-203ENST00000612281 640 ntTSL 3 BASIC31.79■■■□□ 2.68
CCDC88BA6NC98 TINAGL1-201ENST00000271064 2187 ntAPPRIS P3 TSL 1 (best) BASIC31.79■■■□□ 2.68
CCDC88BA6NC98 KRTAP5-AS1-201ENST00000424148 2265 ntTSL 2 BASIC31.79■■■□□ 2.68
CCDC88BA6NC98 SEC61A2-201ENST00000298428 1893 ntAPPRIS P1 TSL 1 (best) BASIC31.79■■■□□ 2.68
CCDC88BA6NC98 TCAIM-203ENST00000396078 2178 ntTSL 1 (best) BASIC31.79■■■□□ 2.68
CCDC88BA6NC98 NLRP6-201ENST00000312165 2679 ntAPPRIS P3 TSL 1 (best) BASIC31.79■■■□□ 2.68
CCDC88BA6NC98 AC007952.6-201ENST00000573168 2673 ntBASIC31.79■■■□□ 2.68
CCDC88BA6NC98 AC003957.1-201ENST00000625108 2673 ntBASIC31.79■■■□□ 2.68
CCDC88BA6NC98 DLX2-201ENST00000234198 2453 ntAPPRIS P1 TSL 1 (best) BASIC31.79■■■□□ 2.68
CCDC88BA6NC98 SSSCA1-201ENST00000309328 698 ntAPPRIS P1 TSL 1 (best) BASIC31.78■■■□□ 2.68
CCDC88BA6NC98 RFXANK-202ENST00000392324 1059 ntTSL 1 (best) BASIC31.78■■■□□ 2.68
CCDC88BA6NC98 UBE2Q2P1-205ENST00000559871 534 ntTSL 5 BASIC31.78■■■□□ 2.68
CCDC88BA6NC98 NUBP2-214ENST00000568706 913 ntTSL 2 BASIC31.78■■■□□ 2.68
CCDC88BA6NC98 ARMC7-203ENST00000581078 1002 ntTSL 2 BASIC31.78■■■□□ 2.68
CCDC88BA6NC98 CYGB-205ENST00000590175 830 ntTSL 3 BASIC31.78■■■□□ 2.68
CCDC88BA6NC98 TSNAXIP1-202ENST00000415766 2338 ntAPPRIS ALT2 TSL 2 BASIC31.78■■■□□ 2.68
CCDC88BA6NC98 OLFM1-204ENST00000371793 2444 ntAPPRIS P1 TSL 3 BASIC31.78■■■□□ 2.68
Retrieved 100 of 98,524 protein–RNA pairs in 30.1 ms