Protein–RNA interactions for Protein: A2IDD5

CCDC78, Coiled-coil domain-containing protein 78, humanhuman

Predictions only

Length 438 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC78A2IDD5 CNNM3-201ENST00000305510 3447 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CCDC78A2IDD5 PHOSPHO2-201ENST00000359744 1125 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CCDC78A2IDD5 AL731557.1-201ENST00000425264 744 ntTSL 3 BASIC18.68■□□□□ 0.58
CCDC78A2IDD5 AC012618.3-203ENST00000426044 917 ntTSL 2 BASIC18.68■□□□□ 0.58
CCDC78A2IDD5 TAPBP-236ENST00000456592 817 ntTSL 5 BASIC18.68■□□□□ 0.58
CCDC78A2IDD5 AL139246.2-201ENST00000456687 1297 ntTSL 5 BASIC18.68■□□□□ 0.58
CCDC78A2IDD5 CA15P1-201ENST00000481698 905 ntBASIC18.68■□□□□ 0.58
CCDC78A2IDD5 PDCD5-207ENST00000590247 699 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CCDC78A2IDD5 ZNFX1-203ENST00000371754 5235 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
CCDC78A2IDD5 CALHM2-201ENST00000260743 1859 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CCDC78A2IDD5 SEC61A2-201ENST00000298428 1893 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CCDC78A2IDD5 RNH1-201ENST00000354420 1894 ntAPPRIS P1 TSL 5 BASIC18.68■□□□□ 0.58
CCDC78A2IDD5 CCDC43-201ENST00000315286 2082 ntAPPRIS P2 TSL 1 (best) BASIC18.68■□□□□ 0.58
CCDC78A2IDD5 PARVG-205ENST00000422871 3462 ntAPPRIS P1 TSL 5 BASIC18.68■□□□□ 0.58
CCDC78A2IDD5 NUTM2F-202ENST00000341207 2516 ntAPPRIS ALT2 TSL 5 BASIC18.68■□□□□ 0.58
CCDC78A2IDD5 NUTM2G-202ENST00000372322 2516 ntAPPRIS ALT2 TSL 5 BASIC18.68■□□□□ 0.58
CCDC78A2IDD5 SPNS1-204ENST00000352260 1948 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
CCDC78A2IDD5 MROH1-202ENST00000423230 1712 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
CCDC78A2IDD5 SMG5-201ENST00000361813 4559 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CCDC78A2IDD5 CALM2-201ENST00000272298 1302 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CCDC78A2IDD5 FZR1-203ENST00000441788 5212 ntAPPRIS P3 TSL 1 (best) BASIC18.67■□□□□ 0.58
CCDC78A2IDD5 IRF7-202ENST00000348655 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
CCDC78A2IDD5 SPERT-202ENST00000378966 1842 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
CCDC78A2IDD5 IL15-201ENST00000296545 2472 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CCDC78A2IDD5 KRT8P45-201ENST00000414328 1447 ntBASIC18.67■□□□□ 0.58
CCDC78A2IDD5 SMC4-201ENST00000344722 5356 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CCDC78A2IDD5 ASB7-203ENST00000558747 2133 ntTSL 5 BASIC18.67■□□□□ 0.58
CCDC78A2IDD5 CD164L2-202ENST00000374027 1457 ntAPPRIS P3 TSL 1 (best) BASIC18.67■□□□□ 0.58
CCDC78A2IDD5 TOX2-205ENST00000423191 1709 ntTSL 2 BASIC18.67■□□□□ 0.58
CCDC78A2IDD5 TMEM240-201ENST00000378733 718 ntAPPRIS P1 TSL 2 BASIC18.67■□□□□ 0.58
CCDC78A2IDD5 MIR564-202ENST00000385049 94 ntBASIC18.67■□□□□ 0.58
CCDC78A2IDD5 HOXD12-201ENST00000404162 841 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
CCDC78A2IDD5 HDAC11-205ENST00000404548 577 ntTSL 4 BASIC18.67■□□□□ 0.58
CCDC78A2IDD5 SHBG-203ENST00000416273 1042 ntAPPRIS ALT2 TSL 3 BASIC18.67■□□□□ 0.58
CCDC78A2IDD5 AL365259.1-203ENST00000451660 707 ntTSL 3 BASIC18.67■□□□□ 0.58
CCDC78A2IDD5 IKBKB-210ENST00000518983 447 ntTSL 2 BASIC18.67■□□□□ 0.58
CCDC78A2IDD5 SHBG-215ENST00000575903 1196 ntTSL 3 BASIC18.67■□□□□ 0.58
CCDC78A2IDD5 AL023803.3-201ENST00000615559 522 ntBASIC18.67■□□□□ 0.58
CCDC78A2IDD5 DOK4-218ENST00000569548 1848 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CCDC78A2IDD5 PHKA2-201ENST00000379942 5559 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CCDC78A2IDD5 PLCG1-201ENST00000244007 5285 ntAPPRIS P4 TSL 5 BASIC18.66■□□□□ 0.58
CCDC78A2IDD5 ANXA3-201ENST00000264908 1657 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CCDC78A2IDD5 ISYNA1-206ENST00000578963 1691 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
CCDC78A2IDD5 GRAMD2B-218ENST00000542322 2977 ntTSL 2 BASIC18.66■□□□□ 0.58
CCDC78A2IDD5 CCNC-207ENST00000518714 1426 ntTSL 5 BASIC18.66■□□□□ 0.58
CCDC78A2IDD5 ACSM2A-201ENST00000219054 1988 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CCDC78A2IDD5 SLC16A13-201ENST00000308027 1748 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CCDC78A2IDD5 BTG3-201ENST00000339775 1485 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
CCDC78A2IDD5 CRKL-201ENST00000354336 5325 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CCDC78A2IDD5 SLC35A3-224ENST00000640732 1777 ntTSL 5 BASIC18.66■□□□□ 0.58
CCDC78A2IDD5 ATP2A3-201ENST00000309890 4826 ntTSL 5 BASIC18.66■□□□□ 0.58
CCDC78A2IDD5 EGFL6-202ENST00000380602 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
CCDC78A2IDD5 NF2-203ENST00000353887 1845 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
CCDC78A2IDD5 LINC01534-202ENST00000433232 554 ntTSL 3 BASIC18.66■□□□□ 0.58
CCDC78A2IDD5 CACNA1A-214ENST00000614285 8410 ntAPPRIS ALT2 TSL 5 BASIC18.66■□□□□ 0.58
CCDC78A2IDD5 RSPO4-201ENST00000217260 2707 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CCDC78A2IDD5 EHMT1-204ENST00000462484 2707 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
CCDC78A2IDD5 P2RX2-208ENST00000542301 1881 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
CCDC78A2IDD5 THOP1-205ENST00000586677 1872 ntTSL 2 BASIC18.66■□□□□ 0.58
CCDC78A2IDD5 DNAJA3-203ENST00000431375 2294 ntTSL 2 BASIC18.66■□□□□ 0.58
CCDC78A2IDD5 GSTZ1-204ENST00000393734 1424 ntTSL 5 BASIC18.66■□□□□ 0.58
CCDC78A2IDD5 AC112777.1-201ENST00000540175 1423 ntBASIC18.66■□□□□ 0.58
CCDC78A2IDD5 TWIST2-202ENST00000612363 1404 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CCDC78A2IDD5 CLEC10A-201ENST00000254868 1797 ntAPPRIS P3 TSL 1 (best) BASIC18.65■□□□□ 0.58
CCDC78A2IDD5 MCCC1-214ENST00000610757 2410 ntTSL 5 BASIC18.65■□□□□ 0.58
CCDC78A2IDD5 CCDC92-201ENST00000238156 2787 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
CCDC78A2IDD5 ZCWPW1-201ENST00000360951 2110 ntAPPRIS ALT2 TSL 2 BASIC18.65■□□□□ 0.58
CCDC78A2IDD5 AC107464.1-203ENST00000468356 2120 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
CCDC78A2IDD5 EIF4ENIF1-202ENST00000344710 3115 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
CCDC78A2IDD5 EHMT1-203ENST00000460843 5137 ntAPPRIS P2 TSL 5 BASIC18.65■□□□□ 0.58
CCDC78A2IDD5 KCNQ2-213ENST00000626839 9213 ntAPPRIS ALT1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CCDC78A2IDD5 INTS11-249ENST00000618806 1523 ntTSL 2 BASIC18.65■□□□□ 0.58
CCDC78A2IDD5 AL354751.1-201ENST00000412768 1863 ntBASIC18.65■□□□□ 0.58
CCDC78A2IDD5 SF1-203ENST00000377387 2947 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
CCDC78A2IDD5 CKMT1A-202ENST00000413453 1911 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CCDC78A2IDD5 MYLKP1-201ENST00000509077 1580 ntBASIC18.65■□□□□ 0.58
CCDC78A2IDD5 HARBI1-201ENST00000326737 1967 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CCDC78A2IDD5 VCY1B-201ENST00000250823 550 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CCDC78A2IDD5 VCY-201ENST00000250825 550 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CCDC78A2IDD5 OR10H2-201ENST00000305899 1041 ntAPPRIS P1 BASIC18.65■□□□□ 0.58
CCDC78A2IDD5 AIF1L-203ENST00000372298 849 ntTSL 3 BASIC18.65■□□□□ 0.58
CCDC78A2IDD5 CACYBP-202ENST00000405362 1059 ntTSL 5 BASIC18.65■□□□□ 0.58
CCDC78A2IDD5 OOEP-AS1-201ENST00000445350 463 ntTSL 3 BASIC18.65■□□□□ 0.58
CCDC78A2IDD5 AL451069.1-201ENST00000455414 634 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
CCDC78A2IDD5 AC026412.1-201ENST00000507290 1033 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
CCDC78A2IDD5 ANK1-211ENST00000522231 1060 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
CCDC78A2IDD5 ANK1-212ENST00000522543 1160 ntTSL 2 BASIC18.65■□□□□ 0.58
CCDC78A2IDD5 NCAM1-AS1-201ENST00000526229 1081 ntTSL 2 BASIC18.65■□□□□ 0.58
CCDC78A2IDD5 C2orf69P3-201ENST00000565542 1120 ntBASIC18.65■□□□□ 0.58
CCDC78A2IDD5 MIR3180-5-201ENST00000583743 153 ntBASIC18.65■□□□□ 0.58
CCDC78A2IDD5 AL513523.10-201ENST00000623024 1186 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
CCDC78A2IDD5 RPS27A-211ENST00000639844 606 ntTSL 5 BASIC18.65■□□□□ 0.58
CCDC78A2IDD5 LHX8-201ENST00000294638 2373 ntAPPRIS P3 TSL 1 (best) BASIC18.65■□□□□ 0.58
CCDC78A2IDD5 BIRC8-201ENST00000426466 2026 ntAPPRIS P1 BASIC18.65■□□□□ 0.58
CCDC78A2IDD5 CDH22-203ENST00000537909 3902 ntAPPRIS P1 TSL 2 BASIC18.65■□□□□ 0.58
CCDC78A2IDD5 TEX13A-202ENST00000609007 1349 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CCDC78A2IDD5 AC135776.1-201ENST00000319817 2481 ntBASIC18.65■□□□□ 0.58
CCDC78A2IDD5 SREBF2-201ENST00000361204 5240 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CCDC78A2IDD5 ELL2-201ENST00000237853 6046 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CCDC78A2IDD5 SLC39A3-202ENST00000455372 2940 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 20.9 ms